Gene detail

Detail information of Am05G037170.1 Annotation

Gene ID	Annotation
Am05G037170.1	Splicing factor, CC1-like

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G037170.1	mRNA	Chr05	171815805	171821829	-

Sequences

CDS:

>Am05G037170.1
ATGGACTTCGACGAGTACGAGTACTTGGAGAAGACGGTGGAGGAGCAGCAGGAAGATAAAGATTCCTCCAAAAAGAAGAAGAGTGACGCCGCCGACAAAACCGAGAGGAGTTACCGTAAGCGCGACGTCGACGACGATCTGGACGGCGAAGATAGGCGGAGCAAGAGGTCTCGTGGCGACGACGAGAATGGTTCCAAAAAGGATCGCGACAGAGATAGAGAAAGAGACAGAGACCGTGACCGAGAACGTGAACGCTCCTCCGGCCGCCACAGGGAGAGGGATAGGGAGAGAGACGGGGAGAGGAGTGTCAGAGACAAAGACAGGGACAAGGATAGAGACAAAGAGAGGGACAGGGACAGAGAGAGGGAGAGGGAGAGGAGAGATAAGGAAAGGGAAAAGGAACGTGAGAGAAGAGAGAGGGAAAAGGAGAAGGAGCGAGAGAAAGAAAAGGATGAGAAAGATAGACCTAGAAGGAGCGTGAGTCGTTCCGAGAGAGACAGAGATAGAGGAGGAGACAGAGAGCGAGATTTTGATATGCGAGATGGAAGGAGATTCAGGGATAAGAAAGAGAATGTGGAACCTGAGGCAGATCCAGAAAGGGATCAGAGAACTGTCTTTGCCTACCAGATGCCTTTAAAAGCAACAGAGAGAGATGTTTACGAGTTCTTCTCCAAAGCTGGCAAGGTGAGAGATGTCCGTCTGATCATGGATAGGAACTCAAGACGATCTAAAGGAGTTGGGTATATTGAATTTTATGATGCGATGTCAGTGCCAATGGCAATTGCTCTCTCTGGCCAACTTCTTCTCGGACAACCTGTAATGGTAAAGCCTTCTGAGGCTGAAAAGAATCTTGTTCAATCTAATGCTTCCAGTGGAGCTGCTGGTGTAACCGGACCATATGGAGCAGTGGACAGAAAATTGTATGTGGGGAATCTTCACTTCAACATGACTGAGAGTCAACTGCGAGAGATTTTTGAGCCATTTGGTCAGATTGAGGTTGTACAACTGCCTCTTGACATGGAGACTGGTCACTGCAAGGGTTTTGGGTTTGTTCAGTTTGCCCATCTTGAACATGCCAAGGCAGCTCAGAGTTTAAATGGAAAATTGGAGATTGCTGGCAGGACTATCAAGGTTTCATCGGTAACAGATCATGTTGGAAGTCAAGATACTAATGCCAAATCTGCAGATTTTGATGATGATGAAGGTGGATTGACTTTAAATGCCCATTCAAGAGCATTGCTCATGCAAAGGTTGGCTGGGGCTGACATTCCCACAAGCATTGGTGTGCCTATTGTGAATGGGTCAGTTCCTGCTCAGCAGCCTTTTAGCTTGCCGATTGGTAATCCAGGTGTTGTGCCTGCACCCGTTCTACCAACACAAGTTATGCCTACCCCAGTAGTAGAGCCTGTAGGAATTCCCAGCGAGTGTTTACTATTGAAGAATATGTTTGATCCAAGCACTGAGACGGAGCCAGATTTTGATTTAGATATTAAAGAGGATGTAGAGGAAGAGTGTTCTAAATATGGCCGGGTCAAGCATATTTATGTTGACAAGTAA

Protein:

Promoter(3k):

>AM05G037170.1
AAAAGCAGACATGGTTTACAATTAAGAACTCAAGAACTAATATGGGTGAGTGTTTTACATAAAGGAAACTTTGTGAAAACCATACTAAGTACTAGACATAGGATAGTATAGTCCATAGGGTGATACTGTGGGTACTTTAAAAGACAATAGTGAACTTATTTAGCTAAGCCTAGACATAGGAAGCTTGTAATGAAACTCTGAAGAAAGTGACTGAAAGACACACAACTAATGCAACAGCATTCAGTGCAACTGCATCATAACTGCATTAAACACTTATAAGTGAATTACTTGGGGAAGACATTCCAACTAGCTTTTCTCTATCGCATTACAACTACTTACACCTTGCTTTATTCTAACTTACTTGTGATACTCACCATCATCAACTATCTTGTTAAATTAGTTATTTTCCTTTAAGTTACCAAGTATTGAATTCTGAAAGAGTTCATCAATCCCTGTGGGTTCGACCTGTTCTAAACACTATATTACTTGTTATGGACTGTGTATACTTGCACATGTTTTCCACACACCAGTCACAAAAAAAATAACTGTCCAAACCGCAATCTAGACTAGTCAATTTCTATCAGTTTTTTGTAATGTGCTACTAATTAAATAAATACAGTTAGTTCCATATTTCTATATAGCGTATAATTTTTTTTCAACATAATATTTATAATTAATTTAGAATTATAAATATTAATTTTCTAAATTAATTAAATTAATTAATATAACTTAATTTAAATTAATATAAAGAAAAAAAAATTAAAAATCACAGTTCAGAAGTCACACGGGGGTGGGGGGGGGGGGACTTCTGAACTGAAAAAGCAATTTTTTTTTTGCAAAATACAGGGTAGAAGTCGTTGGCCCTGGGGGTGACTTCTGGTCTAAACATTGGATGTGTTCTAGTTTGGTAAATAATCTAAAAAGGGTGTTATTTTGGTAAATAATTTTTTTAAGGCTACAGTTGTTTTTTTTGCCGCATATGAGTTGGCAACAACAACCAACCACTGGCAGTCAACGCGGACCACAAGGCGGTGTCCCACTGGTCGGAGCCTTGGGCGGGAAAGTTGGAGTTTTGGCGCCATAACCAGCAGGAGGATGATGACATCATGCTGACATGGAGACTACCCAAAATGTAAACGTAGAGATTTTGCCTATTTTTTATAAAAAGAAGTTTTAGCGAGCTGAGTGCTTACAAAGATGTTTATATATTATACGTCGACGAGGTGCTCATATCGGTAACGGGATTCAAACTCATGTCCTTGTTATCTGACTCTTAACTTTTCTTTTTCTTTTTCTTTTTTATAAAAGGGACCATAAGTTTTCTATTTGATCTATTTATTGTTATTATTATTATTATTATTATTATTTATTTATTTATTTATTGGCTAAAGTACAGTTTTGGTCATTTATCTTTCACTTTTTTTTTGCTTACATCCTTTGTTTTTTAAAATTTCATTTACGTCATTTATCTTTTCAAAATGGTTTAAAATGATCATTATGTTAAGTGACAGTTAAATAGAGTTTGCGTGGAAAGTGATGTGGATAAATTAGCCACGTAAGCAGCTGCCTATTTATTAGGTCATTATATGTTTTTTCATTTCCGTCCTTTATTTTTTTTATTATTCATTTACATCCTTTATCATTTTTAAAATATTCGTTTATGTCCATTATCTTTTCACAGTTAATTAAAATGGTCACTCTAGTAAGTGATTTTTAATTGTGTTTCCCGTTTTTTCGTCTTCGTCCTTTATCTTTTTTTACATTGTTCATTCATGTCCTTTATCTTTTTTAAAATGTCTGTTTACGTCACTTGTCTTTTCACAGTTAATTAAAGGAAATTGGTGCATGGTACGAAACGAAAAGTGAAGAACGACATTGAATACGACAACACCTTTCAGATACCTTTTACCCAGTGAAGTACGCCAAAAATCGAGCTTTCTCATTTTTTAATTATTCAGCGTGTGTGAATTCTTACATTTGGTATTAAATTTTCTCATAACAAATATCATTGGTTGCAGTTAATAGAACAAAAGTGAATTAAAAAAGCTGAGAATTAAAATGGAACAAAAGTGACGAAAGTTGAACTTGAATAATTCTCGGTTTTTAAAATAAAATGATTATTCCGTTAATACGTATTAAAACGAAGAAAAATATTCTATTGCGTTAGTATAGAAATTAAAAAAATGATAATTGAATAATAAATAAAAAAATATGAATTATTCAAGTTTAACTTTCGTCGCTTTTGTTTTATTCTAATTCTCGGTTTTTTTAATTCACTTTTTGTCCTATTAATTAAGAGCAATGATATTTGTTACCTGAAAATTTTATACTAGATGTAATAATTCACACACATGGAACAATTATAAACAAGAAAACTCGGTTTTTGACGTACTTCACTAGGTAAAAGTAACCGAAAGACATTATCGTATTATGGGCTGTCTTCACCTTTCGTTTCGTACACATCCATCAATTAAATTTTCTTTAACTAACTGTGAAAAGATAAATGATGTAAATGACTATTTTTAAAAAAATAAATGACGTAAATGAATATTTTAAAAAAAGATAAAAACAAAAACAAAAAAATAGAAAATATAATTAACAATTACTTACTAGAACCATTTTAATTAACTAATGGCCTAATAACACATTTAGTGACTAGTTTATCCATATCACAGTATATGTAAGTCCTATTTAACTGTCGCTGCCACTTAAGAAAAGACGTAACGCAAATAAAATTTTAAGAGATAAAAGATCTAAAAAAAAAAGATAAAACACAAAAATGTATTTTAGCCTTATTTATTGGAATTGGAATGGGTTGAACAAAAGTATCACTCAAGCTATCTCTCTGAAGTGTGTCGAGGAACCAACCAAAAAACCCCTCTCATTTCCTATCTGTGAAGAGTAAAAAAGAAAAAAACCCAAAACCCTAGAATTTCACATCTCAGCACTGCAGCACTAGAACGCTTCACAACGAGAGGAAGGGAAAATCGGAAGAGAGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00076.25	RRM_1	210	272	1.10E-35
PF00076.25	RRM_1	307	377	1.10E-35
PF15519.9	RBM39linker	398	493	1.10E-21

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0006397	mRNA processing	Biological Process
GO:1990446	U1 snRNP binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0003723	RNA binding	Molecular Function
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR006509	Splicing factor, RBM39-like
IPR029123	Splicing factor RBM39, linker
IPR035979	RNA-binding domain superfamily
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily

trEMBL

trEMBL term	Description
A0A3Q7XUA6	_

SwissProt

SwissProt term	Description
RBM39_MOUSE	RNA-binding protein 39

KEGG

KO	Description	Enzyme
K13091	RNA-binding protein 23/39

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G09880	Splicing factor, CC1-like
Medicago sativa L.	MsG0480023282.01.T01	_
Oryza sativa L.	LOC_Os10g30370.1	RNA recognition motif containing protein, putative, expressed
Cucumis sativus L.	Csa010300	_
Glycyrrhiza uralensis Fisch.	Glyur000048s00002276.1	_
Codonopsis lanceolata	Cl_chr05_22840T	_
Arachis hypogaea L.	AH13G37270.1	RNA-binding protein 39 like

Expression pattern