Gene detail

Detail information of Am05G035570.1 Annotation

Gene ID	Annotation
Am05G035570.1	Transcription initiation factor TFIIE, beta subunit

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G035570.1	mRNA	Chr05	167159803	167164619	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM05G035570.1
TGCGGGTTGAGTGCAAATCACAAACAGAAAAGAGAAAACAAGAGAGAAAGCGAGATTATACCTTTTTTGTGCTTGTAAGGTTGCAATCTTCACAAGAGGTGAAGATCCTTGCAGGTTCAGTGGTGGAGAAGATTATACATCAAACAGCAACACAAACAGTTAGGGTCTGTGTTGAAAAATCAAGGAAGAACTGAAATAAGAAAGAAAAATAGTGAAAGAAGTTTTTCGTTACCTTTGATTCAAATCCTTAAAGTGTTTCATAACCTGCAAAGTACAAACAACGAAGTTAGGGTTTGTGCTAAATCGGTTGAAACAACAAGTAAATCAGAAAGTTCTTAGGCGTATTACCTTCATAAGGAAGTCCGTTTGCAACCCTGAAGCTTCAGAACTTCAAACATCAGGAGCTTGAAGGTCTAGGGTTTCTGAAACAAAAAATCACTACGTAGAAAAAGGGTTTCTGTGTAAGATCAGTGGACGAAGCTTCGTGGTGTTAGATTGAAGCAACACCACGCTTCAATCATCAAGTTTGCTCAAGATTTGAGCAAACCCTAGCAGAATCGTCACTGAAGCAGAAGAGGAGAACAACGAAGGAGAAGAAGAGAAGAGAGAGAATAAAGAAGAGAAAAATGAATTAAAATCCGGATAATCACCTTTTATACTTCCGGATCGGTTTGGATCCGTTTTCAGAAGTGCAACCCGCGTGTTGCTACAGTTGATAACCCACTGGGTTCCGCAGGAACCGTTTTGGTAGCCAAGGCTGGGCTGCTGAGTTTTTGGCCACTGTGGCCTGATTCTAGTGGGTTGGGCAATTGCTAGTTGCACCCCTGCTATTTGATTTTGGCAACCTGAAAGATAAATCAAATTTAAATGGTTAGAAAATTCAATACTGTCAAGTGTGACATGAATGACAGATGCTTTGACTTTATCAATGGGTTCCTCAAGGTTTGAAATGGGAGAATGAGGATTGGCTCCCTGTCTTGCAACAGTGGTATTCCTCATGTCAATTGGTTTTGGTTGTTGTTCTTGCGAATGGAATGAGGAATGGAATAAAGACACTAATGGCCATAACCGAATCCTAACAAACAGTTAACAAACTAACAATAAATCCTAACAAACGATCAACTAACAACTAACAATGAATCCTAACAATCAACTAACAACTAACAAATTGAAGCTAACAATATCCTTCCACTTTTTGGGCCTCGTGATGAGTCACTTGATTCTAGCATCGTAACATTACCCTCCCCATCAAAATCAACATTATCCTCAAGGTTGTAAAAATGTCTGTCTTGAATAAACTTCCCTAGGAACCAATGCTTGAATTGAAATGACCGGAGAACTTTAGACATTTCAAAATGTCCACCAAGATCCCATAGTTGTCCTTTTCCCATTCTCAGTGGTGTAATGTAGTCACGACGTCCAATACTGACAAACTCCCCATATAGCAACATGTAGCAAGAACACCGCCTACCGACTTTCTTGTGCCTAGTTTTCTTCACCATACCACATTCAACACTCTTGATGCAATTTGTTTCCTCATTGTGAAGCATCTTTGCCAACAAACATTGAACCTAAGCAACGTGCATCCTTTTGCGAATCCAACAGTGGAGAGTGTGTCTAAGAGAAAACCACTATGGAACTTTGGATATTTCAAAATGTCCACTGAGATCTCACTGTTGTCCTTTTCCCATTCTCAGAAGTGTAATGTAGCCATAACGTCCAATACTGACAAACTCCCCATCATAAGGATGATACATAGTACCTTCAAAGAAATATTCAGAATATCTAGGGTCAGTTGTCTTGTAATTTGAGTCACTATGAACGACATACACAATATTGGATTCGGCTGCATTGGTGGCGGTGGTGGAATTGTTGTGATGGTGGAGAAATTTGATGCTAATGGGTCTGGGTCGTATGGCTCAATTCTTCATGGTTGTGGTACCTCGAGTTGCAAGGCGAATGATTCGATGGTGTGGAACGTGAAGGGAGCATGACTCGTCAACAAATTGAAGCTAACAAAATTCTTCCACTTTTGGGTTTGGTGATCCGTCGTTTGATTTTAGCATCATAACACAAACACACACTAAATAAGTTTCCTTTCCATTTTAAATAAAGAATTTTCAAAAAATTATCCATTTTTAAATCTTCACTTTTTACAAAACTGGATGCTACATTTTTTATTAATTTAACTAAAAAGGAATAATTTTAGAAATCGTAATTTTATTTACGCAAAGTTAAAAAAATACTTAACTAAAAACTTAAAAATATGTTTAAAACATTCACCAAAAAAATGTTTAAAACAATAACAATTATGATTTTTTTTTTGACAATAACAAATTATGAATTTATTTTTTAGATTTAATTTATATACACAATAGGTGTTTACATGTTTTACACTATCTACCAATTTCCAATTACAAGTTGACACATTATTAAAAGAAATTACTGAATTAGTTAATTGACCCATCTATGAATTATGAGCAGTTGTGGTCGTAAAATCCGTACCCCATAGGGGTATATAACTTAAACTCTTACTATTATTCTCCCTTCGGGCCATAAAATATTGAAAAACCCGGTCTGAGACTCCGAGTCTGCGCGAAGAAGTTGCGGCAAACTCCTTTCTTTATTCACGGTAGCGCTCTCTCTCTGTCTCTCTCTCTCTCTCTCAGTTCGCTACCTACCTGCAATAGTCTATGGCATGTTGCATATCACCGCCACATCTTTTCAATTTTCAATTACGCTTTCTCGTAATTCCGAAACACTTGAAATTAAGGACATTCAAGTTTCACTTATTCTTAAAATCTTAGGGTTCCGACGTCCCTGACCTCAATTCTATTAAGCTCCCGTCGATAGCTTCATCTCTCTTTCCAATTTATTTATCGAGAAACAGAGCGCTGAGTTGCCATGTTTCTCGACGCATAATTAAATTGAAAACATTATTTATCCTGATAAGTTGTTGGTGCAATTTCAAACTTGTATGTGTGTGTGTTTGGATAACAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF18121.4	TFA2_Winged_2	137	194	1.20E-15
PF02186.18	TFIIE_beta	76	136	2.70E-08

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0001097	TFIIH-class transcription factor complex binding	Molecular Function
GO:0006367	transcription initiation at RNA polymerase II promoter	Biological Process
GO:0003677	DNA binding	Molecular Function
GO:0003743	translation initiation factor activity	Molecular Function
GO:0006413	translational initiation	Biological Process

InterPro

InterPro term	Description
IPR016656	Transcription initiation factor TFIIE, beta subunit
IPR003166	Transcription factor TFIIE beta subunit, DNA-binding domain
IPR040501	TFA2, Winged helix domain 2

trEMBL

trEMBL term	Description
A0A2Z6LRQ7	_

SwissProt

SwissProt term	Description
T2EB_DICDI	General transcription factor IIE subunit 2

KEGG

KO	Description	Enzyme
K03137	transcription initiation factor TFIIE subunit beta

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G20330	Transcription initiation factor TFIIE, beta subunit
Medicago sativa L.	MsG0580024407.01.T02	_
Oryza sativa L.	LOC_Os10g25770.2	transcription initiation factor IIE subunit beta, putative, expressed
Cucumis sativus L.	Csa016133	_
Glycyrrhiza uralensis Fisch.	Glyur000436s00018459.1	_
Codonopsis lanceolata	Cl_chr02_50600T	_
Arachis hypogaea L.	AH15G05690.1	Transcription initiation factor IIE subunit beta like

Expression pattern