Gene detail

Detail information of Am05G035540.1 Annotation

Gene ID	Annotation
Am05G035540.1	DEA(D/H)-box RNA helicase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G035540.1	mRNA	Chr05	167138661	167143189	+

Sequences

CDS:

>Am05G035540.1
ATGTGGCGTTGGATGATTAGGGAAGGGCAGAAGCCATCATCTTCATGGGCGGCGGCGGCGGCGTGGAACTTGACAGTTATTCGCAACATGGGAGGCGGTCCACGGACGTTTCCAGGCGGAGTAAGCAAATGGAAATGGAAACGCATGCACGAGAAGCGTGCCAGTGACAAACAGAAAAGACTCCTCGAACAAGAGAAGCAACTCTACCAAGCACGCATTCGCTCTCACATTCGCTCAACCCTCTCCCCTTCTACCAATTCTTCTTCTTCCGCCACTCACCAACCCATCTCCCCTCACCTTCACATCAAATCCCTCGCCGATCGCTTCATGAAAGCTGGCGCCCAAGATCTCTGGAATCACCTCGACGGTCCCCTTACCCCAACCCAAGACCAGGCCCAAGCTCAACACCTAGCCCAATCCCAGGCCCAACCCCGTATCTCACCGTCAGTGGATTCACGCAAGCTTATATCCCAACCTTCGAATCGGAATTTGACAAATTACTCACAGACTAGGGATTACAGTTCTGTTCCGGAGGTTAGGAATGTGGCTGATAGGCAGCGTGTCAGCACTGAAAAGCGAAGAGTTTGGAGAAAAAGTGGTTCTTCAACTGAGAGTGAGAGTGAGAATGAAGTGGAATCTCATTCTAAGATTGGTAGCATTGCTTCTTTGGGGAAATATGATGTCAAGAGGGAGAGGAGGGTGATGCCTAAATCATACAACGAGGATACTGATTTTAAAGAGCAAGTTGAGTTGATCAAGTATCAGATTAATAAGAGGAAATTGAGCAACAATGAGGATCATGATGGTGAGGAACAACAGAACATTATGACTCAAACAAGATTTGAGGATTGTGCTATATCACCATTGACAATCAAGGCACTTTCTTCAGCTGGTTATATTCATATGACCCGCATTCAAGAGACTAGTCTCCCTATTTGCCTTGAGGGTTTTGATGCTATGGTCAAAGCTAAGACTGGCACTGGAAAAAGTGCAGCTTTTTTGCTTCCTGCTATTGAAACAGTTTTGAAAGCTATGAGTAGCAATACCACTCATCGCGTGCCTCCAATACTCGTTCTTATTCTCTGCCCTACCAGAGAACTTGCTAGTCAAATTGCTGCTGAAGCAAAGGTTTTGCTGAAATACCACGATGGCATTGGGGTGCAGACTCTGGTTGGAGGTGTACGATTTAAAGTTGATCAAAAACGTCTAGAATCAGACCCGTGTCAGATACTTGTTGCTACACCTGGTAGGTTGCTTGATCATGTTGAGAATAAGTCTGGAATCTCTGTACGGTTAATGGGCTTGCAGATGCTAGTACTTGATGAAGCTGATCATTTGCTGGACCTGGGGTTTAGAAAGGATATAGAAAAAATCGTTGATTGTTTGCCTCGTCAAAAGCAATCCTTGTTGTTTTCTGCAACCCTCCCAAAGGAGGTCCGTCGAGTTTCTCAGCTTGTTTTGAAAAGGGAACACAAATTTGTTGATACAGTTGGAATAGGTTGTGTGGAAACTCCTATTCAGGTAAAGCAATCATATCTTATTGCCCCACATGAATCACACTTTGAAATGGTACATCATATTTTGAAGGAGCATATCTTGCAAACACCTGATTATAAGATTATAGTTTTCTGTATAACGGGGATGGTGACATCACTCATGTATCACCTTCTTCGAGAAATGAAATTGAATGTTAAGGAGATACATTCTCGAAAACCTCAGCTGTATCGAACTCGTATATCAGATGAGTTCAAGGAATCCAAACAAACAATTCTTGTCTCGTCTGATGTTTCATCACGTGGAATGAATTATCCTGATGTAACTTTAGTCATACAGGTGGGAATTCCTTCAGACCGTGAACAATATATACATCGCCTTGGAAGAACGGGACGCGAAGGCAAAGAAGGAGAAAGCATATTGTTGATTGCTCCGTGGGAAGAGTATTTTTTAAACGAGATCAAGGATCTTCCTCTAAGTAAATTCCCCTTACCAGATATAAATCCACAGACAAAGCTTAAGATTGAGCATTCAATGGCAAAGATCGATAACGACGTCAAAGACGCAGCTTATCATGCTTGGCTTGGTTATTATAACTCTATTAGGGAAATTGGGAGAGAAAAGACCACTGTAGCTGAGCTGGCAACCCGATTTTCTGAATCAATTGGTTTACAGAGGCCGCCTGCTCTCTACCGAAAAACTGCACTAAAAATGGGTTTGAAAGACATTCCTGGCATTAGAATTCGTAGGTACTCAATATTGAACCCAGATAGTTTAAGGTAA

Protein:

Promoter(3k):

>AM05G035540.1
TTAATATCTTCAATGTTATGATTGATTTTTTAGACCAAAAAATTATTATTATGAATTTGTGTGCACAGAGAATTCAAGTTTTGATCACTTGTAAATGTTTTACGATCTGTACAAACCAGAGAATAACGCCTGTTTGTTCACTAACATGATTTTTATGGTCTGTTATATTGGATACATAGTTTTTTTTTTTAGAATTATGGGATTCATAGAGTTAAAAGTATTATATATAGGATTTAGGGCTCGTTTGTTGCTGATTAAAAAATAAGTGATTTTGTTGCTAAATAATTTAGAGATTACTTTTTAGAGATTTTTAAGAAAATTAGAATTTGTTTTGTGTTTTTGTAACATACTGAAAATTACTTATTTTAAAAAAAAAAACATTCTTAAAAAAATGATTTTTACGAAAAGGTACTCACAATTTGTTCATAAAATTGGCATAATTGGATATCACAATTCCAATTACTCTTCTAGATCAAGATTCCTGACATAGGAAGATTAATGGATATGGATTCTCGATTTAGAAACAATAACAATAACCATAAGTTTGACTTGAGCCATTGAAATTGTAGAGACCAAAATCACCTCTATGCATGTCTTTTTTTGTCTATAGATCTAATTTATGTTTTGTATTTTTTTCTTTATTTTTCCCTGTGAGTGCAGCGTTAATATTGTTCATCGTCTCAGTGCGGTCTTTTTGATTTCCCGTCTCGTTGCAGTGTTTGATTTGTTCAGATCGACGGATCAATTTCGACCCATTGCAGATTCAACTAATGACTTTTTTGCCGCATTTATAGGTATTTTGTCGTTTTATGCTGTTAACTTGGATGATGTGAGTTTGTTAGCCTATTTATCCTTTGTGTTTTTAGCAATACTGAAATTGTATTATCATTGTTGTAATCTATCAATTTGAATGAATGAATATCTTTTTTAGTAAAAAAAGGATTATAGAGACCAAAATTTGATATTGTAGAAACTAGGCTTAAAGGTACATTTGGTCCCTGCAAATATACAAAAAATCCTGTTTCGTCCCTGCAATTTCAAAAAATTTCAAAAAACCCTAGCAAGTACCAAACGCTTCTAGTTTGGTCTCTGCTGTTAGTTGTTGGTGATGTGGCTGCCAACGTGGACGCCACCTCCCCACTTTGACTTTTCTCCTCTCACAAGTTCTCTCTTCCCTTTCACTTCTTTCCTTTTTCCTCACCATAATTTCCTCTCTCTTTCCCTCTTTATCTTCCAACAACACACATCTCTCAGAAACACACATATCAACACCAACAACACACATATCTTATCATCTTTATCTAGAAACACATCAAAACACAATCTGGATATATGCAAGAGTGTTGTGTTTGCGTTGAAGAAGAAGCAATCAGATAGACACTCCCTATTGTGCTGAAGAAGAAGAAGCAACACACATATGGTGGTTCACGGTGGAAACAGTGATTTGAGAGAGAGAGGACTTGTGGGCTGAGAGGGAGAAAACGTGGTGATGTGGGCGGTGGCGCGACGTAGATGATGGCGGTGAGAGGATGGTTCACGGTGGAAGTGGTGGTGTTGTAGATGGTTCACGGTGGAAACGGTGATCTGGGGTTTTTGATGGATGGAATGAAGAAAGGGGATTTGGCGTGAAACACACATATCAACACAGATCGTTCTTGCATTTTCTAGAAATTGAATCTGAACGAAATTGAATGTCAACGAAATCGATTTGTCTGCAAATTCCTTATGAAGATGATGAATTGTGGCTTGAATTTTATTTGTTTTAGTTTTAGAAAACGAAACCTGTAACAATTTTCGATTTCGATTTTCCTTCGTCGGCAATTTTGATTTTCCTTCACCTTTTCTGTAGCAATTATGTCGTAAGTTTCAGTAATTAGTAATGGGAAGGAAGGGGAATTTGGGTTTGCTGTAAAAGGAATCTGGGTTTGATGATTTTAGATTCATGTTTTGGTGTTGCAGTGAAAGGGAAGAGAGAAAATGCAGGGAAAGAAGAACGAAGGAAAGAGAAAATGAAAAGGAAAGGAAAAATGAACGAAGGAAGAGGAAAGTGAGGAGGTGGCGTCCACGCTGGCAGCCACGTCACCAATCACTAACGGTGTTAGCCAAAAATTAACGACAGGGACCAAATTAGAAGCGTTTGGTATTTGCAAAGGCTTTTTTAAAAATTTTGAAATTGCAGGGACGAAATAGGATTTTTTGTATATTTGCAGGACCAAATGTACCTTTAAGCCTAGAAACTACAAGAACCAAATCACTTTTATTTTGCGGTAAAAAAATCACTTTTGTTTTGCGTTTAGTATCAATATTTTTTAACGCATATTTATTTTTTTGATTTAAATTAAAATCAATTTATTTTGTGGTTCTATTTAGATAAATAACTTAATTAAGCACTTATATCATAAGTGTTTAACATATGTCCCTCACTGTTGGTTGCCTAGGCAATTTCAACGACATTGGAATGTCGGTTCTTGGGTTTGAACCCAAGTGTGAGCAGTGGTAGTGTGTGTGGTATTTATTTGTCATTTTATCTAAGTAGACAAAAAAAATAAGTGTTTAAGATTTAAGAGCTTATTATGAATAAGTTATTTATATAATAAAAGATAAATAAATATTAATTTTTTTTATTTTTCTATAAATTGTTTATATAAACTCTCTTTAAAGAACTTATGAAAATTAGGCGATAATAGTTTATAAATATGTCATAAATTTGTCTCCACAAACCCTTCCTAACAATTTCTTAAGTAGATATATAAATGAGGCTGAATCAAAATTGAAGGGTATTATGGAATTCTCAAAAACTATTAAATTAGATACAAAAAATTATAACCTTTGATATTTTTTCAAATTTTTTATTTAGATTCTTTTTTTTTCTTCTGAAGACGTTGTTGTGTTGCGTAAGTGAGAGCTGAGTCTTAAACCCTGAAGTTGTTAGGTTAAACCCCAAACCCCTTTCTTGGTTGGCTGATTCGTTCCCGTTGGTTGACTTGAGCATAAGCAGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00270.32	DEAD	303	481	1.30E-42
PF00271.34	Helicase_C	526	631	2.70E-21

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0009536	plastid	Cellular Component
GO:0016020	membrane	Cellular Component
GO:0003723	RNA binding	Molecular Function
GO:0005524	ATP binding	Molecular Function
GO:0016787	hydrolase activity	Molecular Function

InterPro

InterPro term	Description
IPR014014	RNA helicase, DEAD-box type, Q motif
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain
IPR011545	DEAD/DEAH box helicase domain

trEMBL

trEMBL term	Description
A0A1S2YFL4	_

SwissProt

SwissProt term	Description
RH48_ARATH	Probable DEAD-box ATP-dependent RNA helicase 48

KEGG

KO	Description	Enzyme
K17679	ATP-dependent RNA helicase MSS116, mitochondrial	[EC: 5.6.2.7]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G63250	DEA(D/H)-box RNA helicase family protein
Medicago sativa L.	MsG0480023612.01.T01	_
Oryza sativa L.	LOC_Os02g35620.1	expressed protein
Cucumis sativus L.	Csa012859	_
Glycyrrhiza uralensis Fisch.	Glyur000436s00018463.1	_
Codonopsis lanceolata	Cl_chr02_50430T	_
Arachis hypogaea L.	AH13G34410.1	Probable DEAD-box ATP-dependent RNA helicase 48 like

Expression pattern