Gene detail

Detail information of Am05G035070.1 Annotation

Gene ID	Annotation
Am05G035070.1	Ribosomal protein L1p/L10e family

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G035070.1	mRNA	Chr05	165736005	165738388	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM05G035070.1
CATATGTTGATATTTTATCCCAAAATTATATTATTTATATTTTGGGATAATAGAAATCCGTATTAATTAAACCTAGTCTTAAATTGACTCGTAATTTATTGAGAACCTTAAACTATTACATTCTTTCCAAATTAGTCTCGAAACTATTTAAACCGATTAAAAAATCCTAATGTTTTCCTCCGTCCATCAATAAGTTGATCTCTCTATTAATGTGAGTCACATTCAAAAGGGACTAACTTGATTTCTAAATTTTATAGGTTCTTTAATCATTTAAAATAGTTTAGGTACAAAACCGGAGAGTATATGATAGTTAAAGGACTAATTTGAGATTTTATTATTATCAAGTTTGTTCAAATTTGAGGATGAGTTGTGGCCAACAAAATTACTCATCAAAATTTGAATAAACTAGCGCCTTGACCTGAGCACTGCACGGGGTAAAAAATCTAGTTAATAGAGAATAGTTTTTGAGTAAAATTTGTTTCTTAAATTGCAATATGAGAAAATATTGTTTAAACTGAAGGTAAGTATGAATTACAAAAATATGTAATAAAAAAAGGCGATTGCAAACTTAAAAACTAAAATAGAGTGTGTAATATATTTGTCACGAAATTATTATTTTTCCACCAAATCGGTTATTGAGGAAATAACTGAGTATTCGAAGGGTTACAATTTTTTTCGAACACTAAAGTACCCCAAAACATGCGGCTTAGCATCACAACCAAATCGGTTATTGAGACACAAACTTTGCATATTTGAATAGCTGAATTTTTTTACGAACACCAAAGCATAAAAAAACACACTATTTAGCATCGTACTTTACATATTTTGTTTTGAAATTATTTTTTTCACCAAACCGATTGTTGAGGAACAAACTCTGCGTATTCAAATAGCTAAAAAAAATCGATATTGAAATGAACTTTGAGTATTTGAACGGTTAATTTTTTTTCGAACACTAAAGTATCTGAAAACACGCTGCTTAGCATCACACTAGGCGCCAAAATGGAGCTGAGGCTCCCCATGATTTTAGTCTTTAGATTTGAATCATTTTCCATGTATTCTCAAAATTTGTATAAATGAACATCCTTTTCTAATCAAAGAAAAATATAAAAACTAAATTCATTAGGCATAGAAATTACTTTTACGATTTAAATTAAATTTCCTAATCATTCATAACAAGCAACACGCGTACGTCTACATGACATATGTCTAGTTATATAATATAATATAATATAATATAATATATGCATTTACAAAATATTGTTATGGGTCTGTCCACTAAAAATATTACTAAAAGATAACAAAAATAAACTTTATTTCACCTCAACGTGAAATAAAATGTCCAAAAATATATTATAAATTCAAGGATAAAATATATTTGTTGTCGTTTATTTTTTGTTGTATTTTCGTTTCCGTTATTTATCTTTTAAAACGTTGCGTTTACATCATTTATCTATTGACAGTTAATCAAAATGGTCTTTGCTTTTATCAAGTGAATTGTTAATTATGGAATATGTGGATAGTGACATGGATAATTGACCTTGTGGGAATGCCGACTTTGTTACTAGACAATTAAAATTAAAATAGGTATTTTTCTTCACCAAATTTTTCAATATAAAAATTAGGATTTCTAAAGTTCCAGCAGCCCCCATGAATTATTCCTCCCAACGAGGTCTTACTGGTTTTTGATTTTTTTCATACTTGCATTTTTTCGTTTTTTTAAAATTCTATAATGTTCTATTGCACTAACATAGAAATGGCAAGCACAGGAATGGCAGGCCTAATCGAACATGATGTTGTCTTCTACCTTGGTGCAATCTTATTCTCTTATTTTTTTGTCAATGGAACAGGGAAACAAGGTAAAAAGGCCCAACCCAACAACAAACAACATACGAGCCACAAGCCCAAACCCACAATCAAGTGGTCAAACAACCTGGGATACCTAAAAGTACAAATCGCATCGCAACAAAACCAAGATACCCGGAACCCTCACTAAAGTGAAATAGATCGCTGGCTATGTACGGAATCAAGAAGCTCCACGCCCAAGTTCCAGAAGCTTCGACCCAAGAAGCTCCACACACCTTTTCCACGCGATTCAAAGGCGGATCTACATTGTTTCGAGGGGTTCAGTTGACTCCATTGGGAAAAAAATGTTAGTATTAGTGCCTCTATATAAAATTATTTTGAAACTCCTGAAATTTGAAATTTGCACCCAATTTTTAATAAATTTGTTTTATTAATCTCCGTAAGAAACTTTTTATAAAATTTTAGGAAGTAATTTTACCGATATCACATATTTTTACAGATTACTTCTTACTTTCCTATAGTTTGGGATTTAAATAGGCAATGACGGGTAAACTTAAAGATTAATTTGGCGATTACTCTTAAATAAATTTTGAGTTAAATAACTTGATTCCTTAATTTTAGTAAATTAAGTGAGGATATTTGAATAAAAATTAAACAATCTGATAAACTAACATTTTTTATAATGAATTTTTTTTGCACCCCTGGTCTAGGGTCGTGAGCTGCTGGGCCCACCACTGATGCGATTAGCACATAATCGTTGGAACCGGGACACACCATTTCTATTTTTTACCATCCATACTTACGGAAGTTAACTTCTAGCTTCGAAGTTTTTTTAAATTTTAAATAAATACGATTTAACACGTGGGGGTGCAAAGTATAACCCGGGTGTAAAATAGTAACAACAAGATAGAATGAAATGTAAACCAAGCATTATCGAGCCCATCCAGTTCAGCCTGAGGCCCATCATTTATTTACATCTTATAGACTGATTCCTCCATCTTCCTGCCGCGAGAAAACCCTAGCCAGACTCCGGCAGCGGTACTTTCTCTTATCAGATGATTGCGATCTCCGATTTTCTTTCCTTATCTTCTCTCACTCTGATTCTAATTTTGTTTCTTGTTGCATTGAATTTCATTGGAAGGTTGGAGATCACTTTCGGGTTTACTGTTGTTGATTCCGAGAAACCAAATATCGAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00687.24	Ribosomal_L1	22	210	1.90E-43

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0015934	large ribosomal subunit	Cellular Component
GO:0003735	structural constituent of ribosome	Molecular Function
GO:0003723	RNA binding	Molecular Function
GO:0022626	cytosolic ribosome	Cellular Component
GO:0006412	translation	Biological Process

InterPro

InterPro term	Description
IPR023674	Ribosomal protein L1-like
IPR028364	Ribosomal protein L1/ribosomal biogenesis protein
IPR023673	Ribosomal protein L1, conserved site
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich
IPR002143	Ribosomal protein L1

trEMBL

trEMBL term	Description
A0AAN9SPQ5	_

SwissProt

SwissProt term	Description
R10A_ORYSJ	Large ribosomal subunit protein uL1

KEGG

KO	Description	Enzyme
K02865	large subunit ribosomal protein L10Ae

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G08360	Ribosomal protein L1p/L10e family
Medicago sativa L.	MsG0280010519.01.T01	_
Oryza sativa L.	LOC_Os02g21660.1	L1P family of ribosomal proteins domain containing protein, expressed
Cucumis sativus L.	Csa007072	_
Glycyrrhiza uralensis Fisch.	Glyur000139s00009274.2	_
Codonopsis lanceolata	Cl_chr06_17560T	_
Arachis hypogaea L.	AH16G43060.1	60S ribosomal protein L10a like

Expression pattern