Gene detail

Detail information of Am05G034560.1 Annotation

Gene ID	Annotation
Am05G034560.1	HMG (high mobility group) box protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G034560.1	mRNA	Chr05	164620675	164622697	-

Sequences

CDS:

>Am05G034560.1
ATGGCCGACATAGTTGCTGAAATACCCACAAAGAAATCAAGAGGAAGCCGAAAGGCCCTCAAAGAAAAAACCCCATCAACAAATGAAGCCAACATCTTAGCCAACACACCCATTTCTGAAGTCTCTCAGCCCAAGAAACTCTCAAAGAAACAACAAACACAGCATCAGAATTCTTTTGAGAAAGACTTGCTCGATATGCAAGAAAAACTGCAACAGTTGCGTCTCGAGAAGGAGAAAACTGAAGAACTCTTGAAGGCTAAAGATGAGATCTTGAAGCAGAAAGATGAAGAACTTGAAATTCGTGGCAAGGAACAGGAAAAGCTTCAAATTGAACTCAAGAAATTGCACAAGTTGAAGGAATTCAAACCCACCATGAACTTTTCTATCCTGAAAGACAAGGAAGAAGAAAAGAAGGAGAAGAAGAAAAAGAAGGGGTGCCCTGAGAGAAAAAGGCCTTCTCCACCATACATTTTATGGTGCAAAGACCAATGGAATGAGATCAAGAAAGAGAATCCAGAGGCAGATTTCAAAGACATGTCAACCTTGTTAGGGGCAAAATGGAAGACAGTCACTCCAGAAGAGAAAAAGCCTTATGAGGAGAAATACCAAGTTGAAAAAGAAGCTTATTTGAAGGTAACTGCAAAGGAGAAACGTGAGAGTGAGGCAATGAAGCTCTTGGAAGAAGAGCAGAAGCAAAAGACTGCAATGGAATTGCTTGAACAGTATATCCTGTTCAAACAAGAGACAGAAGAAAAAGATGGTAAGAATAAGAATAAGAAAGACAAAGATCCATTGAAACCAAAACATCCTATGACAGCTTATTTCTTGTTCACTAATGATAGAAGAGCAGCTCTTCTTGCTGATAACAAGAATGTCTTGGAGATTTCTAAGGTCACATCAGAAGAATGGAAAAACATGACAGAAGAAAAAAAGAAGCCTTATGAGGAGATTGCAAAGAAGAACAAGGAGAAATATGCCCAAGAAATGGAGGTGTATAAGCAGAAAAAAGATGAGGAGGCTGCCAATCTCATGAAAGAAGAGGAAGAGAATATGAAACTTCAGAAACAAGAAGCCTTGCAATTGCTCAAGAAAAAGGAAAAAACTGAAAATATAATCAAGAAAACAAAATTGAATGGTAAGAAGAAGAAAGAAAAGAAGGATTGTGATCCAAACAAGCCTAAGAGACCTGCATCATCTTACATTTTATTCAGCAAAGAAGTGAGGAAGAGTTTACAAGAGGAACGTCCAGGGATCAATACCAATTCTCTTAATGCACTTATTTCGTTGAAGTGGAAAGAACTGAGTGAGGAAGAAAGACAGGTTTGGAATGGCAAAGCATCTGAAGCAATGGATGCATACAAGAAGGAATTTGAGGAATACAATAAATCTGTTGCTGCAAGCCTCTTGGAGCAGAAGACTGATGAATGA

Protein:

Promoter(3k):

>AM05G034560.1
ATTATTGACAAAACTCAATTACAGAGATTTCTGGGTTGTCTAAACTATGTCTCAGATTTCTTCCCTCAGCTAAACAATCTCATCAAACCCCTCCATGATCGTCTAAAGAAGGATCCTCCTCCTTGGACTAATATTCATACCAATATTGTCATCCAAATCAAAGCCCAGGTTAAAGAGCTACCCTGCCTCTACCTACCAAACCCAGAAGCCTTTAAAATTGTTGAAACTGATGCATCTGACATTGGTTATGGTGGAATTTTAAAGCAAAAGATTTCTGGAAAAGAACAAGTCATTGCTTTCACCTCTAAACATTGGAATCCTGCCCAGCAGAATTATTCCACAATCAAAAAGGAAGTTTTAGCAATTGTCTTATCTATTTCAAAATTCCAATCCGATTTATTAAATCAAAAATTTCTGGTTCGTGTAGATTGCAAGTCTGCAAAAGATATTCTGCAAAAGGATGTCAAAAACCTTGCATCTAAACAAATTTTTGCCAGATGGCAAGCAATTTTAAGTATATTTGATTTTGATATTGAATATCTTAAAGGTTCCAATAATTCTCTTCCTGATTATCTCACTCGTGAATATTTGCAGGGACAGAATTGATTACCTCAATCTTATCCTTAAGCATGATAATGGTACCATTACTAATGGGAAAAACTGCTTATCTTCCACCCTTGAACATGGTGATTGTAGTGTCTCCATAGACATGAAAAACTGTTCAAAAACCACCCTTGAACATGGTGATTGTAGTGTCTCCTCTGACATGAAAAACTGTTCATTATCTTCTAACAATTTCTTGCAATACTGTTGTTTTCATTGTTGCAGGAATATTCAGAAATTCAATCATTGCAAGTTGTCAAGCAATAGTGGCGCCATCACCCACTATCTTGGTCAAAGATGCCCCATCAGTGGAATCCCTGTCATGATTCCATTTGTCCCCCACTGGCCTTGTCATCATGCATAAAGCTGAAGGCATATCTCAGTGGAATCTTGTTGTGGACCCCTTGTCTCCCACTCAGAATGGTATCCAAGGCTCCACTACCTTCAAACACGTGAGCTGTCCAGAGCAACATTGGATCCTCTACAGTTCAAGTCAACCAAGTGCACAGTGCCGGTTGCGCAAGTGTACAGTTCAAGTCAGTCAAGTGCACAGTACCGGTTAGTAACTAGGTACTATTTGTCTTTCAATCTATATATAGAGGTGCTAGGCTCTTGTTAGAAACACCTCACTTCACCCTCACTTCTGAACTCTCTCTCTCTCTCTAAGTCTAGTGAGAAGGCAGAGCACTTGTGAGTCTTCAATCTTCTTCTTCTTCTTTCTTCTTTCAATCTTCAAACGTGTAACTCATAGATAGTTCTTCAACTATCTCAACCATGGAAGGCTTTGCCTCCTAATCTTCTGTAGTTAAACTTTAATTTCTGTTGTTAGTTGCTAGCCATAGCTACCTACTTCTACTTTCTGCTCTTTTAATTTCTTTTATCTTCTGATTCCGATCCCCTCTTGGTATATATATATATATATATATATATTTATAATACCAACCCATTACATTAATGATTAAACTGCATTTTTATAATACTAAGAACATTTATTTATCCCGTGCCTCTTATGGATTAATATAGTAGTATAAAAAATCTCATTAGAGCAGTTTTATGTGGCAGTTATAAAGTGAACACTGATATTCTAGAATTTTGTTGGGTATGGTATCCAACATTCAATTTAATAAAATCTCATTTTTTATATTTAATTATTTTAAAATAAATTTAATTTTTCTACTAATTTTGCCTAGAGTATCAATATCTAATAAAAAATCAAAGATATCATAGAATTCTCTAGTTATAATTGTTTAAATTTAGTTCTCGAAAATTGTTTATGACATCATAATTTAACATTTTAAAATCATTTTTTATCTCTCAATTTCAACAAAAGTACTAATTATCCCAAGTAGGTAGCTCAGTGGGCGAGCTAAGAGATACCAAATGAGTGCAAGAAGGAGGTCTCGGGTTCAACTCCCAGAAACTAACATTTCCCCACCCCCACTAACATTGCTTATAAAGAAAAAGTACTAATTGGAGTTATAGTGTTAGAGTTTAAATTACAAAAAATAGTCGGACTAAAAAAAATCGTAGATACAATCTACTTCTTATATTTTTTGGTCCTTATGGTTGGGGGTGGGGATATGAAGAAAGAAAATGGAGTGTTGCTATTTCAAACATACACTCTTAGCGTCCACACAACAGTTACTTTTGTTTTTACCGTTAGGCCGTGTTTCCGAAACAGTTTAATATTTTAATAAATGAATTACTTTGAAAAATATTTAATGTTTTATACATTTAAAACTTATATTTAAATGTAGTTTCTATATTTTTAATATAGAATATAAAAAAATTAAAATATGGAAACTACATTTGAATATAAGATTTAAAACATTAAACATTTTTCAAAGTAATTCATTTATTAAAATATTAAGTATTTTAATATAGAATATTAATTTTTTATTTTTAATATAGAGTATAAAATTTTGGTCAAAAAAATAGAATAGAAAATAAAATATATTCAAATAAAATATAAAATAAGTTTCTATATTTTAAATATTTGATTTTTGAAAAAACAATTTGATACTATTATGCATATTATTTAAAAAGATCTTACCAAAAAAAATATTATTTAAAAAGATTGATTAATAATACTTAAATTAGAATCAACATTAGGTAAACAAATAATAAAAAACTATTTATTCTTTTACAATAATTTAAAAATTACCTTTTTAACCCATTTTAATTATTTTTGACAACTATTCAACCCATTTTAGTTGACTCCATTAAAAATTCCTCTAATGGCAATACTGTATTTGCATCTTCCATTTCAGTCTTTTTCAAATTTGAAATATCCGACCGTTGGAACCACACTCCTCCTATAAATAACCTCGCCACCCAATTTTCTTACACACATCAATTTCTGAATTCATTTCTCTGTTTCTCTCTCTATCTCACACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00505.22	HMG_box	150	211	2.70E-44
PF00505.22	HMG_box	267	333	2.70E-44
PF00505.22	HMG_box	393	461	2.70E-44
PF09011.13	HMG_box_2	148	209	1.30E-35
PF09011.13	HMG_box_2	265	332	1.30E-35
PF09011.13	HMG_box_2	390	461	1.30E-35

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0003677	DNA binding	Molecular Function
GO:0000793	condensed chromosome	Cellular Component
GO:0070013	intracellular organelle lumen	Cellular Component

InterPro

InterPro term	Description
IPR036910	High mobility group box domain superfamily
IPR009071	High mobility group box domain
IPR044601	3xHMG-box protein HMGB6/HMGB13

trEMBL

trEMBL term	Description
A0A072U5S8	_

SwissProt

SwissProt term	Description
HMGB6_ARATH	High mobility group B protein 6

KEGG

KO	Description	Enzyme
K09273	upstream-binding transcription factor

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G23800	HMG (high mobility group) box protein
Medicago sativa L.	MsG0480023672.01.T01	_
Oryza sativa L.	LOC_Os02g15810.1	HMG1/2, putative, expressed
Cucumis sativus L.	Csa020341	_
Glycyrrhiza uralensis Fisch.	Glyur000036s00004630.1	_
Codonopsis lanceolata	Cl_chr01_10120T	_
Arachis hypogaea L.	AH13G32570.1	High mobility group B protein 13 like

Expression pattern