Gene detail

Detail information of Am05G032940.1 Annotation

Gene ID	Annotation
Am05G032940.1	damaged DNA binding protein 1A

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G032940.1	mRNA	Chr05	160885476	160904628	-

Sequences

CDS:

>Am05G032940.1
ATGAGCATCTGGAACTACGTGGTTACTGCTCACAAACCCACCAACGCCACCCACTCCTGCGTCGGCAATTTCACCAGCCCTCACGACCTCAATCTCATTATCGCGAAATGTACTCGCATCGAGATTCATTTGCTAACTCCTCAGGGTTTGCAGCCTTTGTTGGACGTGCCAATATATGGAAGAATTGCCACACTGGAACTCTTTCGCCCCCATGGTGAAGCACAGGATTACCTTTTTATTGCGACTGAGAGATATAAATTCTGCGTTCTTCAATGGGATACTGAGACTTCTGAGCTTATTACACGGGCAATGGGGGATGTTTCTGATCGTATAGGACGACCGACAGATAACGGTCAGATTGGCATTATAGATCCTGATTGTAGGTTGATTGGACTCCATTTGTATGATGGCTTGTTCAAAGTTATTCCCTTTGACAATAAAGGACAGCTCAAGGAAGCATTTAATATTAGGCTCGAGGAACTCCAAGTTTTGGATATCGAATTTCTTTATGGTTGTTCAAAGCCAACCATTGTGGTTCTTTACCAGGATAACAAAGATGCTCGTCATGTTAAAACGTACGAGGTTGCTCTAAAGGATAAAGATTTTGTTGAGGGTCCATGGTCCCAGAACAATCTTGATAATGGGGCTGATTTATTGATACCAGTGCCCCCACCTCTGTGTGGCGTGCTTATTATTGGAGAAGAAACCATAGTATACTGCAGTGCTAATGCTTTTAAAGCTATCCCAATCAAAGCTTCAATTACAAAAGCCTATGGAAGAATTGATCCCGATGGATCTAGATATTTACTTGGTGACCATACGGGGTTGCTTAGTCTACTTGTAATAACCCATGAGAAAGAAAAGGTTACTGGACTCAAAATTGAGCCTCTTGGGGAGACTTCCATTGCATCTACAATATCATACCTTGATAATGCAGTCGTCTTCATTGGTTCAAGTTATGGAGATTCACAGCTTATAAAATTAAATCCACAGCCTGATGCAAAAGGATCTTATGTGGATGTTTTGGAAAGGTATGTCAATTTGGGGCCAATTGTTGACTTCTGTGTGGTAGACCTTGAAAGGCAAGGCCAAGGTCAGGTTGTAACTTGCTCTGGTGCTTACAAGGACGGTTCTCTACGTGTTGTTCGTAACGGAATAGGCATCAATGAACAGGCATCGGTAGAACTTCAAGGTATCAAAGGAATGTGGTCACTAAGATCCTCGACAGACGATCCTTTTGACACTTTCCTTGTTGTAAGTTTTATAAGCGAAACAAGAATATTAGCGATGAACCTTGAGGATGAGCTGGAAGAAACTGAGATTGAGGGATTCTGTTCTCAAGTACAGACATTATTTTGCCATGATGCAGTTCACAATCAACTTGTACAAGTCACTTCGAGCTCTGTAAGACTGGTCAGTTCGACAACTAGAGAGCTCCGGAACGAGTGGAATGCACCGTCAGGATATTCAGTAAACATAGCTACTGCCAATGCTACCCAGGTTTTGTTGGCTACAGGAGGTGGGCATTTAGTGTACCTCGAAATTGGAGATGGCATACTTCAGGAAGTAAAGCATGCCCAACTGGAGTATGAGATCTCATGCCTAGACATAAATCCTATTGGCGAAAACTCCAATCAGAGTCATCTAGCAGCAGTTGGAATGTGGACTGACATCAGTGTTAGAATTTTTTCTCTTCCTGACCTTAGTCTCATCACAAAGGAGCATTTAGGAGGAGAGATAATACCTAGATCTGTTCTTCTCTGTGCGTTTGAAGGGATATCTTACTTGCTATGTGCCCTTGGTGATGGCCATCTCTTAAACTTTATGTTGAACACAAGTACTGGTGAGTTAACGGATAGGAAAAAGGTCTCTCTTGGGACACAACCTATTACGCTGAGGACTTTCTCATCCAAGAATACTACCCATGTATTTGCTGCATCTGATCGGCCAACCGTGATATATAGTAGTAACAAAAAGTTACTTTATAGTAATGTAAATCTGAAGGAAGTGAGCCACATGTGCCCTTTCAACTCTGCTGCTTTTCCAGACAGTCTGGCAATTGCAAAAGAAGGCGAGCTTACAATTGGCACCATTGATGACATACAAAAACTTCATATTCGTTCTATTCCTCTGGGGGAGCATGCACGGCGCATCTGTCATCAGGAGCAGTCCAGGACTTTTGCTATCTGTAGTTTGAAATACAATCCAAGTGCTGAAGAATCTGAAATGCATTTTGTCCGTTTGCTGGATGACCAGACTTTCGAGTTCATATCAACTTATCCACTTGATACTTATGAGTATGGTTGCTTTATAATTAGCTGCTCGTTCTCAGATGATAATAACGTGTATTACTGTGTTGGAACTGCTTATGTATTACCCGAGGAAAATGAACCAACCAAGGGAAGAATTCTCGTTTTTACTGTTGAAGACGGAAAGCTACAGCTAATTGCTGAGAAAGAGACAAAAGGAGCAGTTTACTGCTTGAATGCGTTTAATGGTAAATTGCTTGCTGCTATTAATCAAAAAATTCAGCTGTACAAATGGGTGCTCCGGGAAGATGGCACTCATGAATTACAGTCTGAATGTGGACACCATGGACACATCCTGGCTTTATATGTGCAAACGAGAGGAGATTTTATCGTAGTCGGTGATCTGATGAAGTCAATTTCCCTGTTAATCTATAAGCATGAAGAAGGTGCTATTGAGGAAAGAGCTCGTGACTACAATGCAAATTGGATGTCAGCTGTTGAAATCCTTGACGATGATGTATACCTTGGTTCAGAAAATAGTTTCAATCTCTTTACTGTTCGGAAGAATAGTGAAGGCGCCACTGATGAAGAACGGGGTCGTCTTGAAGTGGTTGGTGAGTATCACCTTGGGGAATTTGTCAATAGGTTCCGGCATGGCTCCCTTGTTATGCGGATGCCAGATTCCGACGTGGGCCAGATTCCAACCGTTATTTTTGGCACCATTAATGGCGTTATTGGGGTAATTGCCTCTCTTCCTCATGAGCAGTATGTTTTCTTAGAGAAGCTTCAGTCAAACTTGAGGAAGGTGATTAAGGGCGTTGGAGGACTCAATCATGAGCAGTGGAGGTCATTTAACAATGAGAAGAAAACTGTTGAAGCTAGAAACTTTTTGGATGGGGATTTAATTGAATCATTTCTTGATCTCAACCGTAGTAAGATGGATGAGATATCTAAGTCGATGGATGTTACAGTAGAGGAGTTATGCAAGAGAATAGAAGAGTTGACTAGGTTGCACTGA

Protein:

>Am05G032940.1
MSIWNYVVTAHKPTNATHSCVGNFTSPHDLNLIIAKCTRIEIHLLTPQGLQPLLDVPIYGRIATLELFRPHGEAQDYLFIATERYKFCVLQWDTETSELITRAMGDVSDRIGRPTDNGQIGIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIEFLYGCSKPTIVVLYQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGADLLIPVPPPLCGVLIIGEETIVYCSANAFKAIPIKASITKAYGRIDPDGSRYLLGDHTGLLSLLVITHEKEKVTGLKIEPLGETSIASTISYLDNAVVFIGSSYGDSQLIKLNPQPDAKGSYVDVLERYVNLGPIVDFCVVDLERQGQGQVVTCSGAYKDGSLRVVRNGIGINEQASVELQGIKGMWSLRSSTDDPFDTFLVVSFISETRILAMNLEDELEETEIEGFCSQVQTLFCHDAVHNQLVQVTSSSVRLVSSTTRELRNEWNAPSGYSVNIATANATQVLLATGGGHLVYLEIGDGILQEVKHAQLEYEISCLDINPIGENSNQSHLAAVGMWTDISVRIFSLPDLSLITKEHLGGEIIPRSVLLCAFEGISYLLCALGDGHLLNFMLNTSTGELTDRKKVSLGTQPITLRTFSSKNTTHVFAASDRPTVIYSSNKKLLYSNVNLKEVSHMCPFNSAAFPDSLAIAKEGELTIGTIDDIQKLHIRSIPLGEHARRICHQEQSRTFAICSLKYNPSAEESEMHFVRLLDDQTFEFISTYPLDTYEYGCFIISCSFSDDNNVYYCVGTAYVLPEENEPTKGRILVFTVEDGKLQLIAEKETKGAVYCLNAFNGKLLAAINQKIQLYKWVLREDGTHELQSECGHHGHILALYVQTRGDFIVVGDLMKSISLLIYKHEEGAIEERARDYNANWMSAVEILDDDVYLGSENSFNLFTVRKNSEGATDEERGRLEVVGEYHLGEFVNRFRHGSLVMRMPDSDVGQIPTVIFGTINGVIGVIASLPHEQYVFLEKLQSNLRKVIKGVGGLNHEQWRSFNNEKKTVEARNFLDGDLIESFLDLNRSKMDEISKSMDVTVEELCKRIEELTRLH*

Promoter(3k):

>AM05G032940.1
AGAATTCGCTCCAACGGTTTCCACAAGAGGTTTCAAATTAGTTTGATGAGATAAGCTCAACAATGAAAGAGCACCACGACCCACTAGAGAATCACGACCCAACCCATTAACATCCAGCAAAGAATTATTTTGATGAGATAGGCCCAACAACGAATCAGGAACCAGACCATCATTAGAAGAGGAGTTAATGACTGGGCCCACATTTGATGAATATCCAGCCTGACAAGGAATCATCTCCAGCCTGAGAATTCTTGAGGTTGTTAAACTCAACAATCTCCGTGGGAACAAGTAACAAATACAAGTTGTTAACAAGTAACAAGTAACAAATACAAGTTGTCAACAAGTATTGTCATTGTGATTAACATAAATATAAATAAACAAGTAAAGATGTGAAAACAGTAATGAATTGGAAGTATTTAAGAGTGAGTTGGATAGCTCAGTAGTTATGTAAATTCCCAAGAGTAGTGTTCTATAATATTAAACGCTGTAGCGTTAAGCGCTGTAGCGCTTCAGAATCCCTAGACGCTGTAGCGCCTTGGTGGCGTGCCTTTTAGTCACTATCGTCAGGGTTATGTTACAAGACTCCTATGTCTAGGCTCTAAATAAGTTTTACCCCTGTATATTAAGCTCTTACAACATTTGCCTTATGAACTATTACTCCCCTATGTCCAGAGTTAAGTAGTACTTCCTTTAAATGTCTTTAAAGGGTTTTCATTCATATCATTCCTTGAGTTCTCTTTGTGAACCATGTCTGTACCCACAAAGTTACCTTATTTTAGTTGGCCATTCCCAAAACAAAGTTGAAAGCATTATGACACAAGAAATAAAACGCAAACATCATAATATTACATAAAAGCTACTCAAAGTTCATTACACACTAAGAACAATCCAACTACAACATGATTAGCTCATAACAAGTTTCATCAAAATAATACAAACTAAAAAGCTCATATTACCGTAGGAAGACAAGAGGAGAATGGTTGCAAAAGATACACTCCAATGATCCCAAATCACATACGAAGGATGAAGCTATGGCGTGAGCAAATCTTGAATGAAATCTAGAAACTATACTAAAAATAAAAGCTTAAGAGTGGAATAACAATGGAGGAAAGCTACAATGTCAAGCTAATTTCCTCCATGTTACTCCCTAAAAAAGCATTCTATTCTAATTTAATCTAACCAAGTCTTAATAAAAATAATAATAATAATTTATGATCATAAAACTTAGATATTATTCATAAAGCTACTTTACAAAAAGGTGTGATGATTAAAATCACCAACTATCACATGGGACACATGTAGGAGGCGCCAAGTGTCTTTGAAGCATCCACTTGGGTGCTGAAATGTCATGCTAAGGATAAGAGATAAGGGTGATGACTCATCATTTCAGCAAGTGGCTTTATAAATATCCAAATGTCCCACCGTCATATAGGCGCTGTAGCGTCTACCGCTGGCTTACCGCTGCAGCACTCAAGCAAAACATCAATATATTCACAAAGGCACCAAATGTGCCAAATGATAACAAACAAACTCCTAACCCTTCTTTCCTCTAAATAACTAATATTTACCTAATAAAGCACGAATATTACTTGAGAACTTATGTTGATTTAAGTATTAAGAGCACAAATAACCTATATAAAATAGAGTTATCACCTCCTCATCCTTGCTACCTTCAAGGAGCACCAAATTAGCCCCCATTGGTGTTGCATTGATCGAGAACACCCATTGTCTTACAAATTCGCCGTGGATGAAATATGATTTACCCGGATGAATCACTTCACCCGCCATGGCTTTGGAAAGAACAAGACTGTGCTCTGACGTCATCTCAACCGAACGATCACAACTAACCTCCACATTATCGTTCCCCACCTTATGAACCCTGCCTTGAATGTGACTAGTTAAACTCTTTGGTACCCACACTTTTTTTGATGGCTCACCCTGAACATGATTCAATACCGGTTTCGGAGGGACTTTCGAAAGTTTTGCACCTTTGCGATCATCACGTTCAAATGTAGGCATATTCACGAAAAGCTTCACATCATCAATGAATATGTTGTCAAGATAAGTGGCCAATCTCTCCGGTTCCTTCACGCCTAGAAATCGCACAAAGTCAAAACGATTCCCACTGTCATTCCTTCTCGCCGGAATCACCACCTCCAACACCCTCCCATGATTCGAGAATACATCAAATAGGTCTTGTGCCCTAAACCTAACAGGGAAGTTAGTGAAGTAGAAAGATGAAACGTTATCATAAATCATCTCCTCCCTATTAGGTCTAGAAGCAATGTCAGTCTTCAAGAATCCAACCCTCTTCCTTCTTCTAAGAACAATGATGTGACTAGAAAATACTTAGTAACTATAAAACTGCACATAAGTTGTCTTCTTATTTTTATTTTTATTTTAGGCAAAAGTGCTCTCGGGGTCCCTTATCTTTATTTAAAGTAACGAATTAGTCCTTTGTGTTTTTTTTGTCCCAAATAAGTCCTTTATCTTTCAAATTTTTGACACATAAATCCTTTTCCGTTAACAGTGCTGATTTATGTGTCAAAAAAATGATTTATGTGTTAAAAATTTGAAAGATAAAGGACTGATTTGGGACAAAAGGATTTATGTGTCAAAAATTTAAAACATAAAGGACTGATTTGGGACAAAAAAAAGATACAGGACCAAATCGTTACTTTAAATAAAGATAAGGGACCCCGGGAGCACTTTAGCCTTTATTTTATAATGGCACTTTGCAAATTTGCGGGGCAGGGGATTTACAATTACAAAGTTTATCTTCCATAAATGAAAATGCAAAAGTTACCACCATAGTTTCCCCGGGGCAAAAACCGAAAGCAAAGAAACTACTACGAGAGGGCTTGGGGTCAGAGAGGGGTTTTATAGTTTTAGCCCAAACAAAACAAGCGAGAGCGGTTAACAAGTGCTCTCTAGAAGAGACTCTGAGACCCTTTTGCAGTGAGAGTGCGTACTGAGAAGAGAAGAGAAGAGAAGAGAACG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF10433.12	MMS1_N	76	537	3.40E-113
PF03178.18	CPSF_A	745	1057	9.90E-81

Gene family

Gene family	Subfamily
Ubiquitin Family	DDB1
Ubiquitin Family	DDB1

Gene Ontology

GO term	Description	Category
GO:0005634	nucleus	Cellular Component
GO:0003676	nucleic acid binding	Molecular Function
GO:0016746	acyltransferase activity	Molecular Function

InterPro

InterPro term	Description
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR011047	Quinoprotein alcohol dehydrogenase-like superfamily
IPR018846	Cleavage/polyadenylation specificity factor, A subunit, N-terminal
IPR004871	Cleavage/polyadenylation specificity factor, A subunit, C-terminal

trEMBL

trEMBL term	Description
A0AAN9SLA2	_

SwissProt

SwissProt term	Description
DDB1A_ARATH	DNA damage-binding protein 1a

KEGG

KO	Description	Enzyme
K10610	DNA damage-binding protein 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G05420	damaged DNA binding protein 1A
Medicago sativa L.	MsG0480023202.01.T03	_
Oryza sativa L.	LOC_Os05g51480.1	cleavage and polyadenylation specificity factor, putative, expressed
Cucumis sativus L.	Csa001615	_
Glycyrrhiza uralensis Fisch.	Glyur000070s00008075.2	_
Codonopsis lanceolata	Cl_chr07_22740T	_
Arachis hypogaea L.	AH13G28780.1	DNA damage-binding protein 1 like

Expression pattern