| Gene ID | Annotation |
|---|---|
| Am05G032410.1 | Pectin lyase-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am05G032410.1 | mRNA | Chr05 | 159664553 | 159667610 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF00295.20 | Glyco_hydro_28 | 112 | 423 | 1.20E-85 |
| PF13229.9 | Beta_helix | 213 | 365 | 3.00E-07 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| GO term | Description | Category |
|---|---|---|
| GO:0005975 | carbohydrate metabolic process | Biological Process |
| GO:0016020 | membrane | Cellular Component |
| GO:0009831 | plant-type cell wall modification involved in multidimensional cell growth | Biological Process |
| GO:0047911 | galacturan 1,4-alpha-galacturonidase activity | Molecular Function |
| GO:0016829 | lyase activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011050 | Pectin lyase fold/virulence factor |
| IPR012334 | Pectin lyase fold |
| IPR006626 | Parallel beta-helix repeat |
| IPR000743 | Glycoside hydrolase, family 28 |
| trEMBL term | Description |
|---|---|
| A0A1S2YGY1 | _ |
| SwissProt term | Description |
|---|---|
| PGLR4_ARATH | Polygalacturonase At1g48100 |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT1G48100 | Pectin lyase-like superfamily protein |
| Medicago sativa L. | MsG0280007806.01.T01 | _ |
| Oryza sativa L. | LOC_Os05g20020.1 | polygalacturonase, putative, expressed |
| Cucumis sativus L. | Csa005474 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000373s00018539.1 | _ |
| Codonopsis lanceolata | Cl_C02007_unscaffolded_00010T | _ |
| Arachis hypogaea L. | AH13G49970.1 | Polygalacturonase At1g48100 like |