Gene detail

Detail information of Am05G031170.1 Annotation

Gene ID	Annotation
Am05G031170.1	SRP72 RNA-binding domain

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G031170.1	mRNA	Chr05	155776940	155789960	-

Sequences

CDS:

>Am05G031170.1
ATGGCTCCGAAGCCCAAAACGACGTCGTCTCAACCTCCCCCACCACCTCCACTCGAAGATCTCTTCACCACACTCAACAGACACATTCAAGCTTCTTCATACGACAATGCCGTCAAGCTCACAGATCAGATTCTCTCAATTGCACCCGGCGACGAAGACGCCCTCCGATGCAAGATCGTCGCGCTGATTAAAAATGATCGATTTGATGAAGCTATCTCCGCCATTCAATCTTCTCGGACCCCGTCCGATGATTTTCATTTCTTTAAGGCATACTGCTTATACAGAGAAAACAAGTTGGATGAAGCTTTGGAGTCTTTGAAAAGACAAGAGAGAGATGATGAAACAATGCTTTTGGAATCTCAAATTTTGTATCGTCTTGGGAAAATGGATGCTTGCGTAGATATCTACCAGAAGCTCCAAAAGTCCAAGATTGATAGTTTGGAAATAAATTCTGTTGCTGCCTTAGTTATGGCAGGGAGGTCATCTGAAGTTCAAGGATTGCTGGATTCACTTCGGGTAAAAGCAAAAGACAGCTTTGAATTGGCATACAATACTGCCTGTTCTTTGATTGGAAGGGAGAAATACACAGATGCTGAGCAGCTCTTGCTGTTGGGCCGAAGAATTGGTCACGAGACCCTGGCGGATGAGAACTACGCTGATGACGAGATAGAAATTGAACTGGCTCCTATTGCTGTGCAGTTGGCCTATGTCCAACAGCTTCTTGGGCGTAAGCAAGATGCTATTGAAGCTTACACAAACATAATAAAACGAGATATGGCCGATGAATCATCTATTGCAGTGGCAGTCAACAATCTTATTTCATTGAGAGGTCCAAAAGATGTTTCTGATAGCATAAGGAAACTTGAACGGCTGAAAGAGAAAGAAACACAAAGCTTTCGCCTAGCCAATGGACTGAACTTTAAGCTTTCAGCAAAAGAAAGGGAAGCAATATATGCAAATAGGGTTCTTTTGCTTCTTCATGCCAATAAGCTTGACCAGGCTCGAGAGCTTGTTTCTGCATTGCCAGACATGTTTCCAGAAAGTGTGATACCGGTATTGCTGCAAGCTGCTCTCTTGGTTAGAGAGAACAAAGCTGGAAAGGCTGAGGAAATACTGGCACAGTTTGCTGGTAAGTTTCCGGAGAAGTCCCGGATTCTTTACTTAGCCAGGGCTCAGGTGGCGGCTGCAGCTGGCCACCCACATATTGCAGCTGATTCTCTAGCTAAGATACCGGATATCCAACACATGCCTGCCACTGTCGCCACCCTTGTGTCTTTAAAAGAGCGAGCTGGTGACATTGAGGGGGCAGCTGCTGTGCTCGACGCTGCAACCAAATGGTGGTCTAATGCTATGACTGAGGACAACAAGCTTAATGTTATAATGCAAGAGGCTGCTTCATTTAAGCTCAGGCATGGCAGGGAAGAGGATGCTGCTAAACTCTTTGAAGAGCTCATTAAAAGTCAGGAAAATTTGGAAGCACTAGTTGGGCTGATAACCACAGTTGCCCGTGTGGATGTTGTTAAGGCCGAACAGTACGAAAAGAAACTGAAGACCTTACCTGGTTTAAAGGGAATTGATGTGGACAGCTTGGAGCGTACTTCTGGAGTGAAGAAAGTGGAAGGTTCTGCTAACATTGGCATCACCGATACAAACGAGGAAGGAAAGAACAAGTCAAAAACAAAGAAAAAGAGAAAGAGAAAGCCAAGGTATCCTAAAGGGTATGACCCTGCTAACCCAGGTCCTCCACCAGATCCAGAAAGGTGGCTTCCTAAGCGTGAAAGATCAAGTTTCAGACCCAAGAGGAAGGACAAAAGAGCTGCTCAAGTTAGAGGCTCACAGGGTGCTGTAGTTAGAGAAAAGAATGATGCTGGTGCCTCATCCAATAATTCAAATCCAAAATCAAACCAGGCAACCACCTCCAAAGGAGCTACACAGAATGCAGTTTCTGAGCAAACCAAGCCTTCATCTAAGTCGAGAAAGAAGTCTAGGAATTAA

Protein:

Promoter(3k):

>AM05G031170.1
TATTTTTTATAAGGCTGAACCTGGAAACAAAATTCTTTTTGTTTCTAACCCAGTTCTCCCTTTAGGATAAATTTTATCTAGATGACAATATATAATATGTGACAAAGTTGAATTATCTTGTCATATTGACTCAACATTTGATTAAAACAATATATGATAGTTTATTATTTCATATTGCATTAATTTTCAAATATATGTTAGGCCTGCCCTTAAGAGATGTATGCTCGAAATAATGTTCAAAAGATATGCAAGCCTTAGGAATAACTTTAATAATTACGAGTTTAAATATAGACTTTCAATTTTATTCCAAGAAACTAACAATCGAAAATTTAGTCATCAAATCTAAATTATAATTTAGGGTATAAAATCGAAAATATTTTATTGAAAATGTTTAACTCGATAGTAAGAACATTTTATGGAACCCAGAGCGTGAGGTTCAGCGGTCGAGGCTGATCTTCCCTTAACTAAGGGTCGGGGGTTCGATCCCCACCTTGGGTATGGAGCAACGTTAAAACTCTGGGCCAACTGTCCTGCCCCTCGAGGCACCTGCAATTCAACGAGGGGATTAGTCATTGCGGTCGGCGGTGGATACCCTGGGTAAAACAAAAATAGAACATTTTATGGTTTTGTTCCATGTTTATAGTTTGTTGTGTCTCTTATTTGTTTACTTGGGTAGGGTTCTATTGCTAAGTTTTAAGTTAGTTAGCTAGTTTGTTAAATATGTATGTGAAAAAGAAAACACAATTCAAGGAAGGAGTTTTTCAATAAATTGGATTCTATTCTTTTTGGACTATCACCTAGTCTCAGAGCTTCGCAAGGGCCTAATACATAAACCACGGGTCTCAATGAAGACACAGCGAATGATATATGGGACTCCATGAGGCAGAAGTACGAAGGCTCTAAGCGAGCTCATCTTTATACACTTTCACAAGAAAAATTGAGATTCTTGGCAAGGAGGAGAAGGGAACGATTGATGAATACTTAGCAAAGATCTTTCCCATTGTCAACAAAATGAAGCATACGGTGAAAAAGTATTACATCTAACGATTGTGGAAAATATTCCCAAATCAATCACATCAAAATTTTATTATGTCGTGTGTTACACAGAAGAATCAGACAATGTGATTACTTTGTCTATTTGTGAACCCATTGTTTGTTTATTAATGCATGAATAGAGCACGAAGGGAGGAGAAAAGCCCCAAAATTCACGAATGCAAAGAAGATAGTAGGCAGAGGAACATGGTCGACCCGAGCATAAAACAGATCAAGTTGTTGCTTTGGGCCTTCAAGATTTGATCCAATAAACATTACTAATGCAAGAATAGAGAGCGAAGGGAGGAGAAAAGCCCAAAAATTCATGAATGCAAGGAAGATGGTAGGCAGAGCAACATGGTCGACCCGAGCATGAAAAGGGTAAAGCCCTTGCTTTAGGCTTTCAAGTTTTGATCTAATAAGAAGCTTCCTTTAAGCAAAATAAACTCAAGTAATTATAAAATGAGTTAGATTTTAACTAATTCTTTCTCATTGTCGCAATTGGTAAAATATTGACTTCTAACTTGCAAATCTCGGTTCAAAGCCAAGCAACACCAACAATACTTACTTTTTTCCTCAATTTCAAGAATATACTTCAAAAGTCTATAGATGGATACAAATTATGCTGATTTTGATGAAGATGAATAAATGTTGTTAATGGTTCATGCAAAAATGAATATTCATTGGAGAAAAATGTGTGGTTTCTTGATTTGGGGTGTAGTAATCACACATAGCAATGCAAATTGGTTTTTTTTATCTAAATTAAAAAATTAGGGCGTTTGTAAAACTTCGAGATATTTCTAAGATGATGGTTATGGGAAGAGGGTGCCACATTGCATATTGGTGGTATAATTCAAGTGATAACAGATGTATAGACATTACATACCCTAATTAAAGAGTAATCTACTAAGCATTGGCTAATTGCAAGAACTTGACTATCGTGTTTCAGTAAAACATGTGCAGGGCATGTCGTCGAGAAAATGGTGTAACCATATAAACTTAGATGTACTTAAGAAAATGTTATGGCCATTATTGTTTCTCGAGCATACTTCAAGGCAACTCATATATGACATTGCGTGTATGGACATCTCTTCCACAAATGTTTGAGATCTTCAACTTACAAGGGTATGGTGAAGGGTTTGTTAAAACTTGTTGACTCATCTAAGGTATCTAGCTATTGCATGATTGAAAAACAACTTACAATCTTTTGAAAAAAAGCATTAATAGAGAGACACTTAAAGGCTAAAATTGATTCATGAACTAATCAAACCTATCCAATATCAATGGAGTGTTTGGTTTGGTTTCTAAACACGAAATCAAAATCTAATCCAATCTTATAAATGTTTCATAAAAAACATCCAAAAACATCGAATAAAAATCAATTTTGTGCACTTTTAAGTTACTTTAGATTGATTTACCATTTTTATTTCCAATGAGATTGATTTACCCTTTTATTCTGATTAGTTTGGATGACGTTATTTTCCAACGAGTTAAGAAAAGTTAATAATTAGAGTTAAGTTAGGCCTTTTGTTAAAATCGAGAGAGTCAAGACTTAAAATCTTCTCCATATCTTATCATCTCTTATTTTCCATCACTATAATTTGGAGAAAATAAATATGATACTATTATATAAAGTTCGGTCCAAATACTTCTTATACACTCAAAATATCCTAAAAGTTTGTTAATAAAGAGACCAAATGAAGAAGATTTCACCAGAATTATGTACCCAAAAAAAAAGTTCACCGGAATTATAAAAAAAAAACGTTAAGTGAGAAAAAGAATATAAAAAAGAAAAAGTTAAAATCTCGTGTTAAAAAGAAAGGGAAAGAAAACACGAAAGACTCTCGAAGCCAACCCGAGTACCCGACCCATGTTCGTTGGTGTCGTCCCCGACTGAAAAAACAAGTCAATAGCAGTAGCAACTGCCGTTGGTTTCTTTCATTCATCGTTCCGTTTGCCTGAAACCTA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF08492.15	SRP72	550	599	6.90E-17
PF17004.8	SRP_TPR_like	55	153	1.10E-14
PF12895.10	ANAPC3	32	107	3.60E-10

Gene family

Gene family	Subfamily
Transporter family	IISP

Gene Ontology

GO term	Description	Category
GO:0008312	7S RNA binding	Molecular Function
GO:0005786	signal recognition particle, endoplasmic reticulum targeting	Cellular Component
GO:0006614	SRP-dependent cotranslational protein targeting to membrane	Biological Process
GO:0043022	ribosome binding	Molecular Function
GO:0005783	endoplasmic reticulum	Cellular Component

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR013699	Signal recognition particle, SRP72 subunit, RNA-binding
IPR026270	Signal recognition particle, SRP72 subunit
IPR031545	Putative TPR-like repeat

trEMBL

trEMBL term	Description
A0A1S2YGI4	_

SwissProt

SwissProt term	Description
SRP72_HUMAN	Signal recognition particle subunit SRP72

KEGG

KO	Description	Enzyme
K03108	signal recognition particle subunit SRP72

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G67680	SRP72 RNA-binding domain
Medicago sativa L.	MsG0480022923.01.T02	_
Oryza sativa L.	LOC_Os01g66560.1	signal recognition particle 72 kDa protein, putative, expressed
Cucumis sativus L.	_	_
Glycyrrhiza uralensis Fisch.	Glyur000355s00013953.1	_
Codonopsis lanceolata	Cl_chr01_30810T	_
Arachis hypogaea L.	AH13G51520.1	Signal recognition particle subunit SRP72 like

Expression pattern