| Gene ID | Annotation |
|---|---|
| Am05G030940.1 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am05G030940.1 | mRNA | Chr05 | 155127367 | 155130451 | - |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13041.9 | PPR_2 | 155 | 203 | 2.30E-86 |
| PF13041.9 | PPR_2 | 257 | 304 | 2.30E-86 |
| PF13041.9 | PPR_2 | 358 | 402 | 2.30E-86 |
| PF13041.9 | PPR_2 | 456 | 501 | 2.30E-86 |
| PF13041.9 | PPR_2 | 558 | 604 | 2.30E-86 |
| PF01535.23 | PPR | 361 | 391 | 3.10E-73 |
| PF01535.23 | PPR | 560 | 588 | 3.10E-73 |
| PF13812.9 | PPR_3 | 359 | 404 | 5.10E-44 |
| PF13812.9 | PPR_3 | 456 | 501 | 5.10E-44 |
| PF12854.10 | PPR_1 | 557 | 586 | 5.20E-43 |
| PF14432.9 | DYW_deaminase | 773 | 865 | 8.70E-42 |
| PF20431.1 | E_motif | 675 | 737 | 9.30E-20 |
| PF20430.1 | Eplus_motif | 742 | 765 | 2.20E-10 |
| Gene family | Subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH28 |
| GO term | Description | Category |
|---|---|---|
| GO:0009451 | RNA modification | Biological Process |
| GO:0008270 | zinc ion binding | Molecular Function |
| GO:0043231 | intracellular membrane-bounded organelle | Cellular Component |
| GO:0003729 | mRNA binding | Molecular Function |
| GO:0004519 | endonuclease activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR011990 | Tetratricopeptide-like helical domain superfamily |
| IPR046960 | Pentatricopeptide repeat-containing protein At4g14850-like, plant |
| IPR002885 | Pentatricopeptide repeat |
| IPR046849 | E+ motif |
| IPR046848 | E motif |
| IPR032867 | DYW domain |
| trEMBL term | Description |
|---|---|
| A0AAN9KZ41 | _ |
| SwissProt term | Description |
|---|---|
| PP172_ARATH | Pentatricopeptide repeat-containing protein At2g27610 |
| KO | Description | Enzyme |
|---|---|---|
| K23541 | Ca2+/H+ antiporter, TMEM165/GDT1 family |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT2G27610 | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Medicago sativa L. | MsG0180005975.01.T01 | _ |
| Oryza sativa L. | LOC_Os05g38190.2 | pentatricopeptide, putative, expressed |
| Cucumis sativus L. | Csa007053 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000914s00025710.1 | _ |
| Codonopsis lanceolata | Cl_chr06_31470T | _ |
| Arachis hypogaea L. | AH18G05750.1 | Pentatricopeptide repeat-containing protein At2g27610 like |