Gene detail

Detail information of Am05G030390.1 Annotation

Gene ID	Annotation
Am05G030390.1	RNA recognition motif (RRM)-containing protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G030390.1	mRNA	Chr05	153746037	153753387	+

Sequences

CDS:

>Am05G030390.1
ATGGCTGATCGGAGTTTGGCCGTTGTGAAACCGGTTTGGATGAAGCAAGCCGAGGAGGCGAAACTGAAGAGCGAGGCCGAGAAAGCTGCAGCAGCCAAAGCCGCTTTTGAAGCGACTTTTAGAGATTTAGAGAAAAGCCACGAGAAGAGGACTGTTAATTCGGACAGTGAATCTGACGAATATGAGGACTTGGCTCATAAGCCCATTGGGCCTGTGGATCCTTCAAAGTGTACTGCTGCAGGCACTGGGGTCGCTGGAGGAACCGCTTGTGCTCCGTCTTCCTTTGCGGTCGTCACTAAGGATGCTGATGAGAGAAAGGTTTCAACTGGGGGTGCAGATATCAAGGTGAAGGTCACTCCAGGTTTGGGTGTTGGTGGGTCTGATCAAGAAGGTATTGTCAAGGATATGGGTGATGGAACGTATACTGTTACCTATGTGGTGCCCAAGAGAGGGAATTATATGGTTAATGTTGAATGTAATGGCAAGCCAATCATGGGTAGTCCTTTCCCTGTGTTCTTCAGTGCAGGTAACAGTAATGGAGGGCTGATGGGTGTAGCTCCCACATCATCATTTCCAAACCTAGTTAATCAAACTATGCCCAACATGCCAAATTACTCTGGGTCTTGTTCAGGGGCATTCCCAGGACTGTTGGGAATGATTCCAGGGGTTATTGCTGGAGCATCTGGGGGTGCTATTTTACCAGGAATTGGAGCCTCACTGGGGGAGGTTTGTCGTGACTACCTTAGCGGGCGCTGTGCAAAAGTTGATTGTAAGTTGAATCATCCACCTCATAATTTGCTAATGACTGCCTTAGCTGCAACAACTTCAATGGGAACACTTAGCCAAGCTCCTATGGCACCTTCTGCTGCTGCAATGGCCGCTGCTCAGGCAATAGTTGCTGCCCAAGCTCTTCAAGCTCATGCAGCTCAGGTGCAAGCTCAGTCAGCAAAAGATTCCACTGGTTCACCTGACAAAGCTAATAAGGAGGATGCGTTGAAGAAAACTCTTCAAGTTAGCAATCTTAGCCCACTTCTCACTGTGGAACAGCTAAAACAACTCTTTGGTTTCTGTGGGACTGTTGTTGAATGTACAATCACTGATTCAAAGCATTTTGCTTATATAGAATACTCAAAACCCGAAGAAGCAACTGCTGCTCTGGCATTAAACAACATTGATGTTGGGGGGCGCCCTTTGAATGTTGAAATGGCAAAATCACTTCCGCAGAAACCACCTGTGAATTCTTCACAAGCTTCATCCTCCCTTCCTTTAATGATGCAGCAAGCTGTTGCCATGCAACAGATGCAGTTCCAGCAAGCGTTGCTTATGCAACAAACTATGACTGCACAACAGGCTGCTAACCGAGCTGCAACGATGAAATCTGCCACAGATTTAGCAGCAGCTCGAGCTGCAGAGATAAGTAAGAAATTAAATCCGGATGGACTTGTAATTGAAGAAAAAGAGACAGAGCAAGAGACAAAAAAGAAATCGAGATCACCTTCTCCCCCTCGTGCAAGATCACGTTCAAAGTCAAGATCTCCTATCAATTACCGCAGGAGGAGGAGGTCTCGTTCCTACTCACCTGCTCCCCACTCTAAGAATCACCGGTCCAGGTCACCGTGGAGGCCCCATCATTTGAGATTTGAAAGGGAACGGAGGTCCTACAGAGACAGTTGGGAACATAGTGATCGGTATAGAAGACGAGATTCAGATAGGTTGCTTGATCATCATTCATCAGGTTCAAGAAGAAACAGAAGTAAGAGTACGAGTCCTCATGCAAGGAGATTATCCGTTTCTCCAAAACGTCATCGAGATAGTTCATCTCATAGAGGAAGGAAGCTGTCTCGTGCTGATTCTGGCTCTCCAGGTCATTGCAGAGAAAGTAGGTCTTCTCCAAAGATTGATGAAAAGAATCTAAGAAACAGAAGGCGCTCGAGGTCAAGATCTTCAGATGATAAACGTAACTCCTTTGACAAAAGCGAAGAGGTCTTGCATGAAAAATCTAAACATAGAGAGCGAAGGCGGTCCAGGTCGGTATCTGTGGACGAGAAGCCTCATAGAAGGAACCGGACACCCCCAAGAAAAGTGGATGAAAGCAGATCTAGGCACAGGAAGCGGTCTAGGTCAAAATCTGCAGATGTTAAGCATCATGTGCCTGAGAAATTGGATGAAAACAGAAATAGAAGGTCAAGGCATAGTGATAAAAGGCGCTCCAGATCAAGATCTTTGGAAAATAGGGATCCTGATGTCAGAGATGACAAAAGCAAATATGAAAAGTCCAAACATTATGATATAAAAAGGAACAGGTCAGAATCTGATGAAAGGAAGCATCGATCTAAAGATAAATCTGGTGAAAATAATGATAAGAAGTCAAAGCATCACGATAGGAGGCGTTCAAGATCAATATCACCGGAAGGTAAGAATGGAAAAGGAGGCACTTCATCCCATAGAGATGAGAGCGATTTAAAACACAGACAATTCAGGTCAAAGTCCCCTAAGGGCAAGCATCGTTCCGGTGACAAATATGGAAATAGAGATGAAATATCAGAGCATCAACAGAAAACACTTTCTAAATCAAAATCAGAAAATCATAAATCTGATGGGAATGGGCCCGCTCCAAGAAATCTTAAAGAGGACAATTCAGAACGAATAACAAAATCTGATTCTGGATCTGCAGAAGTTAAGCATGATTTGAGTGATGGAGAAAATGCTACTAGTGAGGCAAACTCCAAACTTCTTGAAGATGCCATGCAGGAACCAATTTTAAATGTGAAGGATTCAACAAACATAAATGATAATGGGATTTTGATTTCAGTGAACGAGAACTACAAGTTAGACAGGTCTACTGACAATGTAGCTGCTGATGAAAACCCAGGGTGGAGATGTCTGGAAGAACTGGGAACTGGGAAATGTTAA

Protein:

Promoter(3k):

>AM05G030390.1
TGCCCAAGCAGCATCCTCCCATCTCTCCTCCTCTATAGCCCTACGGTACACCGTCGGCCTCAGCCACTTGAGGGACACAGATAACCCTGGGGCGTGAGCCTGCTCATGTGCCTCATGAGGGCCTGCACCCAACAAGTGAACCAACAAAGTCTCATCCTGATCTTTGGTGTAGTCTGGAAAATCATAAAAATTCCCCATAACGGGGAGGTGGAGCAATGCAGAAACATCATCAAGAGTGATGTTCGTCTCACCTATAGGGAGGTGAAATGATGATGTGTCCGAATGCCACCGCTCTATGAATGCATTGAGGAGCCCACCAATAATAGTTGGGAATCCAATGTCCCTCAGCGGTAGCAGTTTAGAACGCTCCAGAAAATCAATAATGTCCCCATGAGGGGCCTCTATCTGTGGAACTTCGTGTGAAACAAGCTTCAATGGGCCACGATCCTACATTATGGAATGCAAAAGTCAACCAAAGTATTCAAACAAACTAATGATTAAATTAATTAGAGAAAAAAGTAAGTTACTTACATTGCCCTCCCATATGGATCTAGCAATGTGAGACCCGTAACTGGGCAACACTGATCCATCCTCCGGGCCACCAGGAAAAGGAAATGTGGTAGGGGGAGCAGCAGCAGCATCAGCAGAAGGAGCAGCATCAGCATCAGGAGGACCAACCAGGTCAGCATCAGCAGGACCAGCCAAGTCAGCCGCCGGATAGTATGCATCTCTCTCAATGTCATCACCTATGTCCGCCTTCTGCAAAACTGGGGGCACAACTGGGGGTCTGTTTACGGTTTGAAACCGTCATAGGTGGTCTGTTTGCCCGACCCTCGGGCTGTGATTGAGAATAAGCACCCCGAGTCCTCGCCATAATTGAAAAACACAAAGTTACACGTTATAAACAATTTTAAATTTAAAATACAGACTTATAAAAAAATAACAGCTACATTCGGTTGGGGGTACCCGAATACACATTCGGTTGACCCCAACCGAATGCCTAAAATTCATTTCACATTTTAAACCGTTCGGTTGACCTCAACCGAATGGATTCGGGAGGGCTCAACCGAATGGCTTCGTGTTGCCTTTGTCCCCAGGAGCCATTCGGATGACCCCAACCGAATGCTTCGCGATTTATAGATATGGAAAAACGCGTAAAAACAGCAAAAAACTCAAAATGCAAGTAGAAGAGTGTTAGGAATCGTGTACCTTATGTATGGAATACGAGATTTGAGGTTGAAATCGAAGATTGAGTGAGTTTGGGAGAGGGAGATTCGATGAGGGTGAGTAGAGAGGGTTAGGGTTTGGTTGTGGGTGTTTGTGTGAGTGTGAGAGGGGGGGGGGGGTGTGAGGGTTTAGGGAGGGAGAAAGTGTGTTTTGATTTAAGGGTATTTTGGGGATTTAGGGGGTTTGGGGGTGTGGGTTGAGTAGGGAGGGGGTGTGGGAAAAGTGTTAGCCTTAAGTCTTCCAATTATTATGTATGGCCTTTCTCTAGCAAGCCAAATGATATTACGAAATTTGGTGCTATGGTTCAACATTGTGAAACTTTACTTTTGACATTTTACCAAAATTTTAACGTGGAGTTCACTAAAAAGAATGCTAATATAGCGGCTTCTTTGTTAGCAAAGGTGGTGGTTGTATGGATGACAAGTCCTTACTTTTATTACGATATATACTTACATGTATATTGAAATGAAAATGAGTTGATATTTTGCAGTGAAATAAAGGACTACAAAAGTAAATTAATACTATTGCAATTGCTTCTCAAGTAAAAGATATTTCATGAAAGCTATTATTGAATATGTTATAATGGTAAATTAAACAGAATGTTTGCACATTGTCGCCAAGATTGCATATTAAAGACTCTCAATCTCTTGTCTTTGTTCAACAAGGAGTACTGCATATCAAATGCTGAATGGTAATTTTCATTAGTTTCAACAAACTAGAAACTAGGCTTGAATATAGAAGCTAAGTGTCCCAAGAATTACGCAATGTTTTGGGTGGGTTGCTCTAAATATGGACACGAGTGGAAATGTGGAACTACACATCCAAGAATGACAGGATTTGGAGGATTAACTAGAGATCTCTTTAATATTTTGCACACATAAATGATGATTATATTCCACTATTTGTGTTGGGAATTAAGATATAGGAGAGATATTTGCTGCACCGACTCTTTGAGTACATTAATATCACTTTTAGATTCAACTAAATCTTATCATAGACATGACAATAAGATTGCCTTATTGAGACAGACGTTACATAAAAAAAACCGAGAGGTAGAAGAAGGTTCTGAGTTCAATTCTCGAAAACTAACATTTTCCCACCCCATTAAAATTGCTTATAAAAAAAAAGCAAATTTATTCACAGATTTTTCTTCCTGAGATTGTGGATTCAACACTTTCCCATAAACACCCTTGGCCTCACCCTAAAATTTTCGATTAAAAAAAAAAGAATATTTTATTCTCTAGCCCTTGAATTATTATTTGTTGTCCGATAACATGTCCCTTTATATTATTATACTATCCCGTCCCGACCCCTTCGCCTATCAAGATTGAGAAAGAAAGCCTAAAGAGAGCACCACCACCCCCAATCTTGGTCGTCGGCGAATAGGTAAGCTCTTTTCCCTTTTCACCTTGTTTGGTTACACAGAAATTCTACCGGAGATTTCCCCTTTATCTTCGCTGAACCCTCAATAAATCATCTCCATTTCTTCTTCCATAAAATCAAGATTCCCCAATAAACGACTTCATTTATTCTCCGCCCCTTTTCACTGTTTAATCTTCCAAATCCGCGAAAATATCTCTGGATTCCTTAACACACTAGCATTTAACACCAGATTCAATCCATTTTCACTTTTTATTTTTTATTTTCTTTGTTTCGTAGGGCTTTCCCCCCCTAATTCTAGGGTTTATATGTTTGATATGCTTTTCAAGATTTTTATAATCAATTAGGCATTCATCGTAGTCAATTTTGTTGTTGTTGTTGAAGTTAGGGTTA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00630.22	Filamin	71	169	7.60E-21
PF00076.25	RRM_1	338	398	1.20E-12

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003723	RNA binding	Molecular Function
GO:1901652	response to peptide	Biological Process
GO:0016020	membrane	Cellular Component
GO:0046872	metal ion binding	Molecular Function
GO:0016301	kinase activity	Molecular Function

InterPro

InterPro term	Description
IPR000571	Zinc finger, CCCH-type
IPR035979	RNA-binding domain superfamily
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
IPR013783	Immunoglobulin-like fold
IPR014756	Immunoglobulin E-set
IPR017868	Filamin/ABP280 repeat-like
IPR001298	Filamin/ABP280 repeat

trEMBL

trEMBL term	Description
A0A8B8KXX8	_

SwissProt

SwissProt term	Description
CID9_ARATH	Polyadenylate-binding protein-interacting protein 9

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G23900	RNA recognition motif (RRM)-containing protein
Medicago sativa L.	MsG0480023024.01.T01	_
Oryza sativa L.	LOC_Os01g01150.3	RNA recognition motif, putative, expressed
Cucumis sativus L.	Csa004157	_
Glycyrrhiza uralensis Fisch.	Glyur000223s00013791.2	_
Codonopsis lanceolata	Cl_chr08_35500T	_
Arachis hypogaea L.	AH13G00770.3	Uncharacterized protein like

Expression pattern