Gene detail

Detail information of Am05G029840.1 Annotation

Gene ID	Annotation
Am05G029840.1	Pentatricopeptide repeat (PPR) superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G029840.1	mRNA	Chr05	152475350	152477470	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM05G029840.1
AGTAAGGTTGGAATGATTTGAGCTACCCAAGCCAGGCCTAGTTGAAGCTCAAGTGCTGAACTGAATAAGAAAACAAACCTAATTAGTGTCTCAATTTAAATCACCTTAAGCTCCCTAGCTTGCTGGAGCTCAATGAGTTCCAATTGAGTCTTTTAGGCTCAATGGTCAATTTCATATTTGTAAATTGGTAAAATGGTTATTACATATATTTAGTTGGAAAAAAATAATTTATCAAACCAATAGTTAATTTGAATGTCAATATATATTCAATTAATTAATATATATTCAATTAAGAGATCATCGACAATAGAAGTGATTCACAAGCTGAAGTTAGGCACATATAATAAGTAAGAAATCACACCCCCCTCTCTCTCTCTCTAAGTGATTCACAAGCTGAAGTTAGGCACATATAATAAGTAAGAAATCACACCTCTCTCTCTCTCTCTCTCATTATAGAAGAAACTTCAAAATTTAATGAACAGTCTGTGGTGCTCAAAAATATTTATTTACATATTATAAATTCATTTTCTTTAACTGTGAATTCTTAGCTGGATAGAATGCCCTTACCAAAATACTTATGGATCATAGTTTTGGCCACGGTGTGTGTGATTGCTGCAACTTAATGCTTTGGGGAGTCTTTTTGGAGTAACCTAATAGGATTCAATGGGACTAGCTGATTTAATTTTATAGCTTGTGTCGGTCCTTTTAAAGGACAACAAAGTTTCGCCGCTTATCAAATACTACTATGGACCTATTTATAAGAAAAAAACACTTTTTAAGTTCATTGAATAACTGTTGTATCTGGTCTATATTGTAGACTAGATACATCAGTTATTCAATGAACCTAAAAAGCGTTTTTTTGCTTATAAATTAGTCCAGAGGGAGTATGACCCTTTCTTCTAGTTGAGTTGAAAGTATAATTTTGTTTGTGAAGAAGCTGGGGGTCGGGGGGAATGTTCATTCGTGAAGTGTGCAAACTCACCTCAGTATAAATGTACAAATTAAAGTAGTATCTTACTGTTTTGACTTTTGACTTCTAAACTTGGATCGCTTCATTATCAAATGCAAGTGATTGCTTTAAGATAAGATCTAGTAAGAAAAGGGCACTATTGTTGGGTAAAGACTAAGGAGTGATGTTCATGGCATTGATTGATTCTGTCCTATTGAATTAAGTTTGTTATTCCTGTTGCAAACAATTAAAATCATCTATAATCAAACTATTGATTACTTGTTCTTTGTAACATTAAATCTGGTTCTTAATCTGGCCATAACCATGATACCCAAGGAACTTCATAATTAGTTTTTCACTTTTTGCTGTTTGCTTTCGTTTCCATTAATGCTCCGGCAAGATGTTGCTCTTTGTATGATCAGATGTGGGACATGTTTGGGTAAACAACTTAATTAAAAGCTTATAGGATAAACACTTTTTATTTTAAGTACTTGTGTATAAGCTATTTCTATAATCAAAGAGAAAATATAGTTAAACTGTTTAGTACCAAAAAATTTGTCCTCACGATTGGCTACTAATATCTCTTCTCTTCTTCAGCTGCAAGTTCCGTATCTGGATTTTTCGCAGCAGCTTGCAGTTTGCCATTTGACTATGTGAAGACACAGATTCAGAAGATGCAACCTGATGCTGAGGGAAAATATCCATACACTGGCTCTCTTGATTGTGCTGCCAAAACCTTGAAAGCAGGAGGACCCTTCAAATTTTACACTGGATTCCCTGTCTATTGTGTTAGGATTGCTCCTCATGTCATGGTACTGTGATTCTTTTTCCTTTCTTGTCCTTTTCTAATTTCGCATTTGATGGTTTTCTCATGTTTATATAAATTACTTATTCCAGATGACATGGATCTTCCTCAACCAGATTCAGAAATTGGAAAAGACTTATGGGTTGTAATTTTCTACTATAGATGGGAATTTTGTGCCTAAGCACAAGCTGAGCATTGAATAATTTGTTGGCTATGTTGTAGCCTTTTTTTTGCAATTGAACACCAATGGAGCCGATCATTTTTTAAGATTTAATTAGTTATGCAACTGAAGTGGGATTTTGACATACATTACATTGTATCGGTAATATATAGAATTGGATGCAGCTGGAGCTAGTAATAGTATAAATTCCATTTTTGAATGGAGAAATTTCTGAGTGCAGACTAGAATAAGTAATCTATCCCAGACAATTTTTCAATGTCAAGTTTTGTAATTTTTCTCTCCATATCTGGACCTATCTCTTGCAGCTGAGAATTCAAATTCGTATTATTTTATAAACTTTTTGTCATAAATAAGTTTTGTTGATGTCCTGCTTTTGTTAATGCGTACAAGAAAAATGTTGGTTATCTGTACGACAAATTATCAATATATGATATGTTGACCAGTCAATAAACTGTTCAAGACAAAAAGTCAATAGATTGTGGAAGTAGCTTCGTGTAGAATTAGTTTATGAGGAAGAGATTACACGATGAGAGAGTGTCGAGCATAAAGAAAGCCTCTAAGCTTGTTCATGAAGTAGCATATAGTAGTAGTAATAGCTTCCAAATTAACAGACGTATAGTGAAAGAGAAATGTAAATGTATGAAAGCTTGTGATTGGTATTAATGGCGTGGCACGCGCAGGGCCGACAATGAATTGTATCAACAAGATGAGCATGAGATCTGACTAGAAAAATAGTTAAGCCAATAAAAAAACTCAACTCAAATTGTGTATTTTTGGTCTGATGGGACCTAACCCCCATAAACAGCATTTCTGCCGCTGTGGCCAAGAATATCATCTAATTACAAAACGATGTGTTATAAAAAAAGTTTGATTTTATCTAGAATATACTCACCTACACTGCTGAATTTTGTTGTTGACTGTGTAAACACCCTGGTCTATATAGTGACCTCGTTTCTTCAACAACTCCACGCCCTTTGGAAAATAGGCGATGCGCCCAGAACTACTGCAACATGCTCCTTGAATCACACTTAGCACCACCTTTCCTACGAACCACCATAGTAGTTG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01535.23	PPR	176	205	1.60E-31
PF13041.9	PPR_2	174	221	5.30E-26

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0004519	endonuclease activity	Molecular Function
GO:0043565	sequence-specific DNA binding	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0003700	DNA-binding transcription factor activity	Molecular Function
GO:0006355	regulation of DNA-templated transcription	Biological Process

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR046960	Pentatricopeptide repeat-containing protein At4g14850-like, plant
IPR002885	Pentatricopeptide repeat

trEMBL

trEMBL term	Description
I1M497	_

SwissProt

SwissProt term	Description
PPR14_ARATH	Pentatricopeptide repeat-containing protein At1g06140, mitochondrial

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G06140	Pentatricopeptide repeat (PPR) superfamily protein
Medicago sativa L.	MsG0780040619.01.T01	_
Oryza sativa L.	LOC_Os01g10800.1	pentatricopeptide, putative, expressed
Cucumis sativus L.	Csa013624	_
Glycyrrhiza uralensis Fisch.	Glyur000154s00013429.1	_
Codonopsis lanceolata	Cl_chr03_05590T	_
Arachis hypogaea L.	AH18G06290.1	Putative pentatricopeptide repeat-containing protein At1g56570 like

Expression pattern