Gene detail

Detail information of Am05G028990.1 Annotation

Gene ID	Annotation
Am05G028990.1	regulatory particle triple-A ATPase 6A

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G028990.1	mRNA	Chr05	150624937	150630213	+

Sequences

CDS:

>Am05G028990.1
ATGGCTACAGTTGGAATTGAAGTGAAGCGCGCAGATGGCGTACCAGAGGAGAATTGCTCCGCCAAACCCACCAAACAGGGCGAGGGTCTCCGGCAGTACTACGCTCAGAACATCCATGAGCTACAGCTCCTTCTCCGACAAAAGACCCATAACCTCAATCGTCTTGAGGCTCAACGTAACGAGCTCAATTCTAGGGTGAGGATGCTCCGTGAAGAACTGCAGCTTCTTCAGGAGCCTGGTTCTTATGTTGGTGAAGTTGTCAAAGTTATGGGCAAGAATAAAGTGTTGGTCAAGGTCCATCCGGAAGGGAAATATGTTGTTGATATTGATAAAAGTATTGACATTACAAAGATTACTCCATCAACCAGAGTTGCTCTCCGCAATGACAGTTATGTGCTTCATTTAGTTCTGCCAAGCAAAGTTGATCCGTTGGTCAATCTGATGAAAGTTGAGAAAGTTCCTGATTCTACATACGACATGATTGGTGGTTTAGACCAGCAAATCAAAGAAATTAAAGAGGTCATTGAGCTACCAATCAAACATCCTGAGCTATTTGAAAGTCTTGGGATAGCTCAACCAAAGGGTGTCTTGCTCTATGGGCCACCTGGTACAGGAAAAACATTGTTGGCTAGGGCAGTGGCACATCATACTGACTGTACGTTCATCAGGGTGTCTGGTTCTGAACTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTCGTTATGGCCAGGGAACATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGTATGGAATCTGGAAGTGGCAATGGTGACAGTGAGGTGCAACGGACTATGCTGGAACTTCTCAACCAGTTGGATGGATTTGAAGCTTCAAATAAGATCAAGGTTTTGATGGCTACAAACCGAATTGACATCTTGGATCAAGCACTCCTGAGACCCGGTCGGATTGACCGGAAGATTGAATTTCCAAATCCTAATGAAGAGTCTCGCCTAGATATCTTGAAAATCCATTCAAGAAGAATGAACTTAATGCGTGGGATTGATTTGAAGAAGATTGCCGAAAAAATGAATGGAGCATCTGGTGCCGAGCTTAAGGCCGTGTGCACAGAAGCTGGAATGTTTGCTTTGAGGGAGAGGAGGGTTCATGTGGCACATGAGGATTTTGAGATGGCTGTGGCTAAGGTTATGAAAAAGGAGACCGAGAAAAACATGTCACTGAGGAAGTTATGGAAATGA

Protein:

Promoter(3k):

>AM05G028990.1
CCCAGCAGCCAACAAGCAAGGCGCTATCAACCTGCACGCACAACAGCAAGAAACAGTAGCAAACAACAACAACGATAAACAGGCAACAGGCAGTCAGACATGGCGCCCAGCAACATCAGCAACACAAGCAACGGGCAGCCAGACATGGCGCCCAGTGCACCAGCAACAACAACAGGGCAGCCACACTTGGCGCCCAGCAACAACAGCAACGGCGCCCATGGCGCCCAGCAACATCAGGGGCAGCCACACTTGGCGCCCAGCAACAACAACAACGGTGCCCATGGCGCCCAGCAACATCAGGGCAGCCACACTTGGCGCCCAGCACACAACAACAACGGCGCCCATGGCGCCCAGCAACATCAGGGGCAGCCAGACATGGCGCCCAGCAACAATAGAAACGGCGCCCATGGCGCCCAGCAACATCAGGGGCAGCCACACATGGCGCCCAGCAACAACAGAAACGGCGCCCATGGCGCCCAGCAACATCAGGGGCAGTCACACATGGCGCCCAACAACAACAGAAACGGCGCCCATGGCGCCCAGCAACATCAGGGGCAGCCAGACATGGCGCCCATCAACAACAGAAACGGCGCCCATGGCGCCCAGCAACATCAGGGGCAGGGCGCCTAGGGCTCCATCAATCATACCAAATCGTTTTCCTTATGAACATGGCAAAGAACAAATATAATTCTAGGGCTAATAACATAGAACACCAATCACACAACAATTGTTCAACAAGGCAACATAAATATAGGATCATACATGGTGACAACTTATCAAACCCTAACCCCTACATAAAACCATTCATAGGACCCATTATAGAGCTAGAACCCTACCCTTACCTTAGCCTTGAAAGATTCGAAGTTCCTTGCCCTATTCCTCTCCTCTTGCGCCGTTCCTCTCTCTCTTTCCCTCTTGGCCGTCGCGCCCTTCTCTAGTGCTCTCTCTCAAACCTTTTTGTTTTTCTTCTAAGTGAGCAAACCCTAACCTAATTTCCCCTCTCATAATCTCACTTAGTCTTATGGGCTTTTCTTAGCTTAATTCGACTTAACATCATGGGCTTTCCTTAACACCTCTCATTTTACTACTCCTAACCCTAGCAATAGGCCCACATGTACTAGCATATTATTATTCTATTATTTTTGTACCACTTAATTAACCTATTAATTAAATAAAAGTCAACGTAGCAACTATACTAATAATTCCCAACTTCAACAATTCTCACACTTAATTATTGAATAAATTAATTAAATAATTAATTAAATATTTGGGGCGTTACATGGCTGATTTTAATTTATTCCACATCATTAAGGTAAAATACACACAATTAATCAATGGGCAACCTAGGCCTCACGCTGATTCAAAAATTAACTCGTTTTTTTATAAGCTCAAAAATTAACTCGTTGTCTTTAGTTCGCGAACTCGAGTTTATACTTTATAAGCAAGGATAATGTACAAATATATTTTATGTTTAATTCTTTTAACAAAAGATAATGTACAAAATTCCCTCTACTCTACAAAAAGAAGGATAATGTACAAATTCTTTATTTATTTTTGTGAGAACAATTTGTTGGTGGGAATAATGCTGCAACTAAGAAGTACAATAAAACATAGAAGATCATTAGTAACAATAATTGTGAATGACATGTAAGATAAATAACAAGGAGAAGGTGATTAAATTCATCATTGCACTAGACTCCAAGGCGTGTATGACACTAAGCTTTAGGTTCGATTCGCCCCCACCAATCACTCTAGATTGGATGCAATATGATAATCAGCGAATCCCCTTCGGGATACAATGGAGTTCCTTGATATGGTCTGCATACCCACACCAAGCATATCGATCAATGGTAGTTTACGGAACAAAGTTTCCTCAATTACTCTCGTGCACTAGAGAAAAAGAAGAAATGACTTAGATATAATTTTGGGAAAATTTTGGCATAAAATATATGAATTTCGTGTATTGTGTTTATCTGCCTAAAAGTGTCTCTATTTATAGAGAAACTCATGCCACTTGGTGAAGGGAAACAACTCATAAAAGAGTCTTTACAATTCTGAAACAAAACCATTAAATATGATTCTCGTTCAGTAAATGACACAATATAACAGTTGTCTCAACAGTTAAAGGATGTGTCAATTCACTGATGTGTTGTGAGTTCGATTCGAATCCCAGCCAACACCTTTGTTGGTTTTTAATTTTCATGCATGTAAAACAAATAAAATGATTTTCCAAAATTATGTTAACTATGAAATTCGAACCGATGCCATTATAGCCGAAGAAACACACCTAAACCACTGAGCCAAACGAAATAACATGCCTTTTAATAGCATTAATCGTATTTAACCAATTGTATCTTTCCAAATATATATTTTGGAAATTTCTCCAACAATTTTTTGGTAGATAAAGGTTTAGATTAGGGTAAGGACCGACCCCATGCAATGCCTAGCCAACCAGCAACCTCATTGATGGTTTCCACTGGTAATTACAGCGTCGCCTACCCCGGCCCACAGCGCAAGTCCGCTTTGGATAGGCCACAATACGAGGGGAAGCTGAGAATCGAACCCGCCCTTGCAATATCACCGGGCCGAACCAGCTAATCCACCCCGATGGGGCATGTACAAATTCTTTATAAACTAAATTGATATTTTAATTATGAAATGTATATATTCAAAGTTTTACACGGAAAATAATAAATAATAGAAAGGTAAAAATAATAATTTTTCTTTTTTTTGAAAATGTAAAAATAATAGTTTCGCACTCATCAAGTCGATGGAATTATAAAACATGATAAGCGGTGCAGCAAATGACAGAAGGTACCCAAAGAAAAAACCTCGGTGTCACCTTCCTTTCCAATTAGGGTTTCGATTGACTCTTTAACCCAAAGAAAAGAAAAAGTCGCATCTTGAAGATTGAAAACAGTGCAATCTCAACTCATAAAACCACCTTACCTCCGAGAAAATCGGTTGCTCTAGAACAGTTGATCTGATCTGATCTGATCT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00004.32	AAA	196	329	2.30E-43
PF17862.4	AAA_lid_3	353	395	3.90E-13
PF16450.8	Prot_ATP_ID_OB	83	138	8.20E-10
PF07724.17	AAA_2	196	289	1.30E-07

Gene family

Gene family	Subfamily
Epigenetic Regulators	PATPB1

Gene Ontology

GO term	Description	Category
GO:0005524	ATP binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	Biological Process
GO:0005737	cytoplasm	Cellular Component
GO:0008233	peptidase activity	Molecular Function

InterPro

InterPro term	Description
IPR032501	Proteasomal ATPase OB C-terminal domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR012340	Nucleic acid-binding, OB-fold
IPR003959	ATPase, AAA-type, core
IPR003960	ATPase, AAA-type, conserved site
IPR003593	AAA+ ATPase domain
IPR041569	AAA ATPase, AAA+ lid domain
IPR005937	26S proteasome regulatory subunit P45-like

trEMBL

trEMBL term	Description
A0A1S2YH83	_

SwissProt

SwissProt term	Description
PRS8A_ARATH	26S proteasome regulatory subunit 8 homolog A

KEGG

KO	Description	Enzyme
K03066	26S proteasome regulatory subunit T6

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G19990	regulatory particle triple-A ATPase 6A
Medicago sativa L.	MsG0480022678.01.T01	_
Oryza sativa L.	LOC_Os02g11050.1	26S protease regulatory subunit, putative, expressed
Cucumis sativus L.	Csa020539	_
Glycyrrhiza uralensis Fisch.	Glyur000910s00020568.1	_
Codonopsis lanceolata	Cl_chr08_31870T	_
Arachis hypogaea L.	AH14G00770.1	26S protease regulatory subunit 8 homolog A like

Expression pattern