Gene detail

Detail information of Am05G028840.1 Annotation

Gene ID	Annotation
Am05G028840.1	ubiquitin family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G028840.1	mRNA	Chr05	150362363	150364891	-

Sequences

CDS:

>Am05G028840.1
ATGGCTTGTTCTTCATCATCATCATCACTGTCGTCGACGGAGGAAATGACACTGAAAGTGAAATGGAGCGGAAAGGAATACACCGTCCGAGTTTGCGGCGACGACACCATCGGAGAACTCAAACGTCGAATCTGCGAGCTAACCAACGTTTTACCCATTCGTCAAAAGCTTTTGTACCCTAAACTCGCTTCCAAACTCAACGATGATTCTATCTTCCTCTCTCAACTCTCTCTCAACTCCTCTTTCAAATTCACAATGATCGGTACTACTGAAGAAGATATAATAGTAGATCAAGTGGAATCACCTGAAATTGTTGATGATTTTGAACTTCCTCAACAAGAAGCTATTGATATCAAAGACATGCAAATCAACAAGCTCAAGTTGACCAGACGCATTAATCACTTCAAGGTTGAGCTTCAAAACCCGTGTCGTGAAGGAAAGAAGCTTCTTGTTTTGGATATTGATTACACCCTTTTTGATCACCGTTCTACTGCTGAGAACCCTCTTCAACTCATGAGACCTTGTATTGTGCCCTCATTTTTTTATCATTTTGTTTATTTATTTGTTATTATGGTTGCAATTGTAATTTCTAAATGGTGTGTTTTTTTGTTCTCTGCAGACCTTCATGAGTTTCTTACAGCAGTGTATTCTGAGTATGACATTATGATATGGTCTGCAACCAGCATTAAATGGATTAATCTCAAGATGGGACAACTTGGGGTTCTGGAAAATCCTAACTACAAAATTACGGCACTGCTTGACCACTTGGCAATGATTACTGTTCAGACGCCTTCTCGTGGGGTCTTTGATTGCAAGCCACTTGGTTTAATCTGGGCTAAGTTCCCTGAGTACTACAATGCTTCAAATACTATCATGTTTGACGACCTTAGAAGAAATTTTGTGATGAACCCGCAGAATGGTTTGACAATTAAACCATTCAGGAAGGCTCATGCTAACCGAGACAGTGATCAGGAGCTTGTGAAACTTACTCAGTACTTACTCGCCATTGCAGAGCTTGATGACTTGAGTAATCTTGATCATAATAATTGGGGGTCATTTGCCGAGGACAATGCTAAAAGGCGTAGGCACAAATGA

Protein:

Promoter(3k):

>AM05G028840.1
CCCAATGTCCATTGATCGTCTTCATCCAAGAATAATGCGTCATCAACCAAGACCTCTTCGAGTTGAGTACCCTAATGAAGCTTTTGGAGGAAACATTCCAAACAATTCTTCTACTAATGGGGTTTTTGGATATGGAGAAACTCCTCACAACACAATTATCATGTAATTCCTATATTTTCTACAATGGTTGTTGTTTTCATTAAATTTCTAGACCTTCTTTTGTGATTTTTATGGACTATTACTTATGTTTGAATTATAAATTCCCTTTAATTTGTGTGCTGATTTTCAATTTATCCAACAAATTTTAATATCAACAATTAAGTATTCGCTAAAGCTTTGACCCTGTGCATCACACGGGTCCTGGCGCTAGTAAAAATTAATAGCTTTCACTTGTTTTAATTAAGGGTAAAATGGGAAATAAAAATTATAACGTGGGAAATTGAATTCTCTAAGGTCTGGCAAATCTCAACCGTTAGATCAGATAAGCCCTCTGATCTTGATCTAACTAGTACTGTACCCGTGCATCCGCACGGGCCGATCGCGTTACGTGACACGATTACCTCAAATAGAAACGTTAATTTGAAATCTCATTAATCTAAAATCAATTGTAAAATATAGAGGATGACTTGCATACGCACACGTGCTGTCGTGTTATTTTTATGAATGAATTTAGACAGTATTTAAATAGTCTGAACATTACCACGTGAAAAATAAAGAAAAATTTAAAGTAGATAAAAAAGGAGTTTCAAATAAAAAATTGATAAATATAAAAACTAAAAATGTAAAAGTATCATTTAAAAATAATATGTGCATTTATCCCGTGTGTTTTTATATATCAGTGCAATTATCTCGTGTTTTTATATATATCATTGCAGTTATCCCCGTATTTTTTTATATATCAGTGTAGTTGTCCAGTGTTTTTTTATGTATCAGTGCAGTTATCTCATAGTTTAAATTGATTATTTGAGTTGATTAGTAGATTATTGTAGATAGTAAAAGATAGATAGTAGATTATCAATTACAAATATTTATCCCGTATTTTTTTATATATCAATGACAATTATTTGTCCTTTTTAGGTATTATTGACAAATATTTGTCACCCGTGTTTTAAATATTAATCAGTGTAAATAGTCATTAAGTCTTCTTGTTTTTTTAGATAGTATGATTATAGTAGTCTTAAAAAATTATAATTATCAATGGCAAATATTAATCCCGTGTTTTTTTTATATATCACTGCAATTATTCCGTGTTTTTTTATATATCAATGCAGTTATCTCATAGTTCAATTGATTATTTTAGTTGATTAGTAGATAGTAGATAATCAATAAGAAATATTTGTTTTAAATATTAATTAAATATTCCTTTCTTACCATTGATTAGTAGATTATAGTAGATTATTGCAGTTATCCTGTGTTTTTTTAGATAGTAGGTTTATAGTAGTTTTCCAAAATTATAATTATCAATGGTAAATATTAATTATAAATTGTAAAAAAAAATTATAAATATCAATGGTAAATGTAACATTCTGGGACCTTTCCTTACCCTAAAAAATTAAGTATTCGCTAAAGCTTTGACCCTGTGCATCGCACGGGTTCTGGCGCTAGTAAAAATTAGGCAGAATAGCACTTTTGGTCCTTTATGTTTGCTCCAGATTTCACTTTGGTCCTTTATCTTTTTTTTGGTCCGTTTTGGTCCCTCATGTTTCGTTTTCGTTTCATTTTGGTTCCTCACGTATTATTATATTCAATTAAAACATTAAAAACATTAAAACAATTAAAATAATTAAAACAATTACAAAAATAAAACATAAAACCCTCCCCCCACCGTCCACCACCACCCACCACCACCCCCCACCGTCCACCACCACCCACCACCACCCCCCACCGTCAACCACCACCCACCACCAGATCTGTCTCTCTCTCTCACCGTGAACCCCTCCCCCCCTCCCCCACCGTGAACCCCTCCCCCTCCCCCCCACCGCTGCGCACCCCCTCTCTCCCCTTTCTCACGGTTATGGAGTTCTCCCACGAGGTAGGGCCTGTAATTGTTCAAATTGACGCCATAATCGAACTCAGGGAGAAATTTCGAGTTGAAAGGTGGAGTTTGGGGTCCAATCGCAGAGAGAGGAGTGAGAACGTGTGAGAGGAAGAAGACGGGTCGGGTTGTGGAGAGGAAGAAGACGGGTCGTGGGAGAGGGGGGAGGGGGTACGCAGCGGTGGGGGGTGGGGGGAGGGGGTGCGCAGCGCTGGAGGGTGGGGGAGGGGGTGCGCAGCGCTGGGGGTGGGGGGAGGGGGGCGGTGGGGGAGGGGGGTGCGCAGCGCTGGGGGTGGGGGGAGGGGGGAACAGTGGGGGGGGGGGGGAACGGTGGGGGAGGGGGTGCGCAGCGCTGGGGGTGGGGGGAGGGGGGACAGTGGGGGAGGGGTGGACGGTGGGGGGAGGTGGTGGGTGGTGGTTGACGGTGGTGGGTGGTGGTGGGTGGTGGTGGACGGTGGGGGGATGGGTTTATGTTTTATTTTTGTAATTGTTTTAATTATTTTAATTGTTTTAATGTTTTAATTGAATATAATAATACGTGAGAGACCAAAATGAAAAGAAAATGAAACATAAATGACCAAAACGGACCAAAAAAAAGATAAAGGACCAAAGTGAAATCTGAAGCAAACATAAAGGACCAAAAGTGCTATTCTGCCTAAAAATTAATAGCTTTCACTTATTTTAATTAAGGGTAAAATGGGAAATAAAAATTATAACGTGGGAAATTGAATTCTCTAAAGTCTGGCAAATCTCAACCGTTAGATCTGATAAGCCCTCTGTCTGATCTTGATCTAATAATATCTCCACACTGCGGGAAATCTAAATCCTGCAACGTGGGAAGTGTAAACCTAGAACTCTAGAAGTACTGGTGAGAAGGTTAAGAAGGGTAACTTCAAAACTCACTCACTACACAGAAATAGAAGAGAACCATAACCATTCTACTTGTTATTTTACTACTACTTGCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03031.21	NIF	148	342	1.50E-21
PF00240.26	ubiquitin	18	59	3.30E-07

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0004721	phosphoprotein phosphatase activity	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0016020	membrane	Cellular Component
GO:0046872	metal ion binding	Molecular Function

InterPro

InterPro term	Description
IPR029071	Ubiquitin-like domain superfamily
IPR000626	Ubiquitin-like domain
IPR011943	HAD-superfamily hydrolase, subfamily IIID
IPR036412	HAD-like superfamily
IPR023214	HAD superfamily
IPR004274	FCP1 homology domain

trEMBL

trEMBL term	Description
A0AAN9MVU5	_

SwissProt

SwissProt term	Description
UBCP_ARATH	Ubiquitin-like domain-containing CTD phosphatase

KEGG

KO	Description	Enzyme
K17618	ubiquitin-like domain-containing CTD phosphatase 1	[EC: 3.1.3.16]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G06599	ubiquitin family protein
Medicago sativa L.	MsG0480023180.01.T01	_
Oryza sativa L.	LOC_Os01g65450.2	ubiquitin-like domain-containing CTD phosphatase 1, putative, expressed
Cucumis sativus L.	Csa000809	_
Glycyrrhiza uralensis Fisch.	Glyur000070s00008029.1	_
Codonopsis lanceolata	Cl_chr05_35360T	_
Arachis hypogaea L.	AH13G46840.1	Ubiquitin-like domain-containing CTD phosphatase like

Expression pattern