Gene detail

Detail information of Am05G028540.1 Annotation

Gene ID	Annotation
Am05G028540.1	HMG-box (high mobility group) DNA-binding family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G028540.1	mRNA	Chr05	149792501	149798820	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM05G028540.1
CGAGTGCCCCTCACTTTTCAAAACCAAAGCAAAAAAACTTTCACTTTCAAAGCTCGTTAGAACTACGTCGCTTTGATTCCCATTTGGGATACGTAGGAGCGAGTCACATCCTCGTCAAGCGCAATCATAAAAAGTTTAGCATTTGCATAACAAAAAGAAAAGAGTTATTTTCATAACAAAAAAGAATCACTTTTGCAAACCAAGATCATTTTCGGAACGAAAACCTTTTCCTTTCTAAAAACATTTTCAACCCATCGTCGCTAGTGGCTAATCAGAACCTTTGTTCGTCTAGCCATTGGTGGCGATGTCTTTTTCCCAAAAGAACAACAAGCGATGATCACTCATAACCTTTGTTAGTTTGATCATTCATGCCAATCAATCTCTTTCGAAAACCCCTTTCAAAAGAACAAATAAAAACGAGTCGCTACTAATAGTCAATCAGAACCTTTGTTCGTCTGACTGGCGGTAGTGACTCTCATTTTCAAGAGTACTTAGCGATGATTACTCATAACCTTGGTTAGTTTAATCATTCGCTAATGCTCGTCCTATTTCGAAAACTCACTAAAAAAGATAAAAAACAAAAAACTTTTCAAAAAGACAAAGAAGAACTACGTAGCTTTGAGTTCTCCATCGCACCGGGAGATACGTAGGAGCGGGCCATGTCCCGTCAAGCGCTCTTTTCCTAAAAACCCATTCTTCCCCCTTTTCTTTTTCATAATAAATAAAGATTTTCACTAAGAATTTTTCGATAAGAAGTAGAGAGGCAAAATTAAGTATTTTCAAGTCAACACACTAAAACCACACATTTAATTAAAGGTTCCCTCTCAGTAGAGAGGACGTGTGGGGTGCTAACACCTTCCCTGCACGTAACCGACCCCCGAACCCTATTCTCTAGTTTCGCAAGACCAATCGCTTTCCAAAAAAGGTTTTCCTAATATTTTCCTTAATAAATATTGGTGGCGGCTTCATTGTCTTAGGAAAAGTTGTGAACGAGGAAGGTTCTCCCTCTGGGACTTTTTCGGGCGCAACAGCTGGCGACTTCACTGGGGACTAAAAAACATTTTTTTCAAAAGTGGGTCAAGCCTAATTAATTAAGTGTGTGGTTTGTGTGATTGATTTGAACATCTTGCTTTGCCTCTATTCTTCTTCTTTTTCATAAGCATGTTGCATCCATATGCGTTCTTCTTCTATGTTTGCTTTTGTTTAAAATAATAGATAGTTACTTCTTTGCTTAAATGCTTAGTTCCCTCATGCATATTTCCCCTCTCTTGTCATGTCCCCTTCTTCTCAGCTCCCTTTCTGAGGTAAGTAATGTGTTTGTTGTTGGCACCCTAGATTAGTTGAAATTGATTGGTATTGAACCCTAGGGTAGATGACATGTTATGGCTTTCTATTGTCTGGACTGTTCTGGATTTTCATTTGCAAGTGGGGTAGTTTTTAAGGAAATGCCCTTCACACACACACACACACTTGTACCTTGAGATTATATGATTAGAGAAAGAGACCATAACCCAGGTCTGTTAGGGTACCTTAGGATGAGTGGATTCGAGTAGTGGGAGCCCATCAAGACCTTTGTCCGTTTGGCTACTCGCGAAAGTTTCAATCAGAGTTGTGCTCTTTCACGATGCTTCGTATCTAGCAGTTTGCTGCATTTATGGGGATTTTCATGAGAGGGACCGTGGCTCTGATAACCTTTGTGAGGGTGTGAATAGAGCTACATGAGAAGATTATCCCTAACATGCCTTAGATCATAGGTTCTACCCCCTTTTTAGGTCACAAGGGCTTTCCAAATTGTGTGCTGCATTGTTGCATTCAGTTCAATCAATTTTTCCTTCAAAATCTTCGAAAATAAAAAAAGATATGCTTTTCCTTTTCAATAAACGCCTATATGAGGTGGCATATAGTGTGAAAATTTTCAAATCACCACCTGTAAATATGCTCTTTCTGCAAAAACACAAAAAAGAAGCATCATTGCATCATTGCATCATTTGCATTGCATAAAATTCCAATTTTAAAAAAAAAAAAACCCATTCATCTTGCATTCCCTTTCATTACATAAAGATAAAATGGAAAAAACAATTATCATCTGCATAGCATAAGCATTTCATTTATGATCATGCAAAAAAAAAATCCTCGATGAGACATTCATGCATAAGCTAGAATGAGTATTGTCACTAGCAACAATAATAGAGATATGTGTCTCGCTGACAATGGAACAACCCACACGATTCTCAAGGACAGGAATTATTTTTTTTGCTTAGTAATGCAAAAAACCAATGTTAGTACTATATCTGGTACTACAAAAATAAATGAAGGCTTCGGAAGAGCCAGTGCATTGTTACCTGGAGGAACAAAATTAGGTATTGATATGACACTATATTCTCCCAAGTCTCGTAGAAACTTATTGAGTTTCAAAGATATCCGCTTAAATGGTTACCATATTGAAACAACAAATGAAGAAGATATCGAATATCTCTATATCACGAGACATGCCGCAGGAGAAATAAGTATATTGGAAAAATTACCAACATTTTCAAATGGTTTGTACTACACCTTTATTAGTACAATTGAAACACATTCTATTGTAAACTAGAAGTTTACAAATCACAATAAGTTTCTCATTTGGCATGACCGGTTGGGTCATCCCGGTTCTATTATGATGCGAAAAATAATTAAAAATTCATGTGGACATCCCTTGAAGATCTGGGAGATTCTTTAATCCAATAATTTTTCATGTACTGCATGTTCTCAATGAAAGTTGATAATTAGACCATTACCAACAAAATTTGAGAGTGAATCTCTTGCATTTTTAGAACGGATACAAGGTGATATCTGTGGGCCAATACACCCACCATGTAGACCATTTAGATATTTTATAGTTTTAATCGATGGATCGACTAGATGGTCACATTTAAAAGTAAAAAACTCGTGTGGGTAAAAACTAAAAACCAACGTACCTTCGTCACAAGTCCGCGGCTGGTGTCTTGTGGACTGACGGAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00505.22	HMG_box	60	129	1.40E-18
PF09011.13	HMG_box_2	58	129	7.70E-18

Gene family

Gene family	Subfamily
Transcription Factors Family	HMG
Epigenetic Regulators	HMGB14

Gene Ontology

GO term	Description	Category
GO:0006325	chromatin organization	Biological Process
GO:0003682	chromatin binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0003677	DNA binding	Molecular Function
GO:0010197	polar nucleus fusion	Biological Process

InterPro

InterPro term	Description
IPR031061	High mobility group protein HMGB, plant
IPR036910	High mobility group box domain superfamily
IPR009071	High mobility group box domain

trEMBL

trEMBL term	Description
A0A1S2YHX1	_

SwissProt

SwissProt term	Description
HMG14_ARATH	High mobility group B protein 14

KEGG

KO	Description	Enzyme
K25507	high mobility group B protein, plant

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G34450	HMG-box (high mobility group) DNA-binding family protein
Medicago sativa L.	MsG0480022772.01.T01	_
Oryza sativa L.	LOC_Os01g47600.1	HMG1/2, putative, expressed
Cucumis sativus L.	Csa018823	_
Glycyrrhiza uralensis Fisch.	Glyur000261s00014381.1	_
Codonopsis lanceolata	Cl_chr03_10350T	_
Arachis hypogaea L.	AH13G49550.1	High mobility group B protein 14 like

Expression pattern