Gene detail

Detail information of Am05G028480.1 Annotation

Gene ID	Annotation
Am05G028480.1	starch synthase 4

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G028480.1	mRNA	Chr05	149720527	149732736	+

Sequences

CDS:

>Am05G028480.1
ATGGCTTCGAAGCTTACGACGTGTTTTGTGTGCTGGAATCTCAGTGGCTTCAACTGTAATCACTCCAATAGAGTAATAATGCGTTTTCCTTTTCCACCTTCCTGCAAAATGCGACACCGTATTCTCAGTTCTCAGCAAAAGAGACAATACATTAAGAAAAATGCGCGTCCTTCAATAGATGGAGCTCTCAATCCAAATCAAGATGATGACTCTGAGATTCACAAGGCTTCATTGGACGTTAATAGTACTGGAGACTTAAAAAGTGATGATTCTGTGGAGAATTTGAACCGTCCAATTGTACTACCGGATGATATTGCCACACCCTCGGCCTTAAACTTAAATGGAACAGACGGGACTGAGCTCTTGCCTGGTGATCAACTTGAGGATTTGTTAGACATGATAACAAATGCAGAGAAAAACATTCTTCTTTTGAATCAGGCCAGAGTTCGTGCACTTGAAGATCTTGAAAAGATTCTTACTGAAAAGAAAGTGTTACGAGAGGAAATTAATGTCTTAGAGATGAGGTTGGCCGAGACTGATGTGCGGATTGATGCTACCACCCAGGAAAAGATACAGGTGGAACTCTTGGAGGGTGAGTTAGAGAAACTGCGTAACGAGTTGGCTCAAAAGGGTAGTACTGAAGAAAGAGATGGTGAATCGCATGACCTTCGTGATGGAGTTTTGAGCGATGCAACTGCAAACTCTTTAAGTAGTAGTGATAGTATCCGCTCCCTTAATGAGGAGCTTATTTCATTAAAGGAGGAAAACACATCTTTGAAGAATTCAATAGAATCATTTAAAACACAGCTTAATGATGTCATGAATAATGATGAACGTTTAGTGGTACTGGAAAAGGAACGCTCCTCTTTGGAATCAGCCCTAAAAGACATGGAATCAAAACTCGTGTCTATATCCCAGGAAGATGTATCTGAACTGTCTACACTTAGAGTTGAATGCAAGGATTTATCAGATAAGGTTGAAAATCTGCAATTGTCGCTAGATAAAGCAACCAAACAAGCCGATCAAGCTGTTGTAGTGTTGCAACAAAACCAGGATCTTCAAAGGAAGGTTGATAAACTGGAAGCATCTCTTGAAGAAGCTGACATCTATAAGCTATCATCTGATAAATTACAAAAGTATAATGAATTAATGCAACAAAAGATAAAACAATTGGAGGACCGACTTCAAAAATCAGATGAAGATATAAACTCTTATGTTCAGCTGTATCAGCAGTCAGTGAAGGAATTTCAAGATACACTTGACACTCTGAAAAAAGAAAGCAAGAGAAGGGAACTGGATGAGCCAGTGGAAGATATGCCATGGGAATTCTGGAGTCAGTTGTTGCTTTTAATTGATGGTTGGACACTTGAAAAAAAGATATCAGTAGATGATGCAAAGCTTTTGAGAGAAAAGGTATGGAAGAGAGACAGGCGTATTAGTGAAGTATATATGGCTTGCAAAGATCGGAGTGAACATGAGGCTATTTCTGAATTTCTTGGGCTTACATCATCTGAAACTAGTCCAGGATTATATGTGGTTCATATTGCAGCAGAGATGGCACCAGTAGCTAAGGTTGGTGGTTTGGGAGATGTTATTAGTGGCCTAGGTAAAGCATTGCAAAAGAAAGGACACCTCGTTGAAGTTGTGCTTCCCAAATATGATTGTATGCAATATGACCGCGTCACTGACTTAAGAGCCTTGGATGTGGTAATAGAATCGTACTTCGATGGTCAATTATTCAAAAATAAAATCTGGGTTGGCACTGTTGAAGGCCTTCCTGTTTATTTCATTGAACCCCATCATCCTGATAAGTTCTTTTGGAGAGGACAATTTTATGGCGAAAATGATGATTTCAGACGATTTTCATATTTTAGCCGTGCAGCTCTTGAGTTTATTCTTCAAGCTGGCAAGAATCCGGATATCATTCATTGCCATGATTGGCAGACAGCATTTATTGCTCCTCTATATTGGGAGATATTTGCCCCAAAAGGATTAAATTCATCTAGGATATGTTTTACGTGCCACAACTTTGAGTATCAAGGAACTGCCAGAGCTTCTGAGTTGGAATCATGTGGACTTGATAGCCACCATCTAAACAAACCAGATAGAATGCAGGACAACTCAGCACATGATAGAGTCAATTCTGTCAAGGGTGCAGTTGTTTTTTCGAACATCGTAACAACAGTATCTCCTACTTACGCTCAAGAAGTGAGAACTGCAGAGGGAGGTAAAGGCCTCCATTCAACTCTCTCTGCCCACACCAAAAAATTCATCGGTATTCTTAATGGTATTGACACTGATATATGGAATCCTGCCACCGATACATTTCTTGAAGTTCAGTACAATGCAAATGATCTTCAAGGGAAAGCAGAGAATAAGGAAGCCTTGAGAAGGAATCTAGGTCTTTCGTCTGCAGATGTTAAGAGGCCATTGGTTGGCTGCATAACAAGATTGGTTCCACAAAAAGGTGTTCATCTTATTAGACATGCAATATATCTAACATTGGAGCTGGGGGGACAATTTGTTCTACTTGGTTCAAGTCCAGTGCCACATATTCAGAGAGAATTTGAGGGCATTGCCAACCACTTTCAGAATCATGATCACATAAGGCTGATATTGAAGTATGATGAATCTCTCTCCCATGCCATTTATGCCGCATCGGACATGTTCATCATTCCATCTATCTTTGAACCTTGTGGCCTAACACAGATGATATCAATGAGATATGGGGCCGTACCTATTGTTAGACAAACCGGTGGCCTAAACGACAGTGTTTTTGATGTTGATGATGATACAATACCTTCACAGTTTCGAAATGGATTTACATTTTTGAATGCTGATGAGAAGGGACTAAACGGTGCTCTAGTACGCGCGATTAATCTCTTCAAGAACGATCCTGAGAGTTGGAAGCAACTTGTCCAGAAGGTCATGAACATAGATTTCAGCTGGGATTCTTCAGCAGCGCAATACGAGGAGCTTTACTTAAAGTCTGTGACTAGGGCAAGGGCAGCAAAACGTGCTTAA

Protein:

>Am05G028480.1
MASKLTTCFVCWNLSGFNCNHSNRVIMRFPFPPSCKMRHRILSSQQKRQYIKKNARPSIDGALNPNQDDDSEIHKASLDVNSTGDLKSDDSVENLNRPIVLPDDIATPSALNLNGTDGTELLPGDQLEDLLDMITNAEKNILLLNQARVRALEDLEKILTEKKVLREEINVLEMRLAETDVRIDATTQEKIQVELLEGELEKLRNELAQKGSTEERDGESHDLRDGVLSDATANSLSSSDSIRSLNEELISLKEENTSLKNSIESFKTQLNDVMNNDERLVVLEKERSSLESALKDMESKLVSISQEDVSELSTLRVECKDLSDKVENLQLSLDKATKQADQAVVVLQQNQDLQRKVDKLEASLEEADIYKLSSDKLQKYNELMQQKIKQLEDRLQKSDEDINSYVQLYQQSVKEFQDTLDTLKKESKRRELDEPVEDMPWEFWSQLLLLIDGWTLEKKISVDDAKLLREKVWKRDRRISEVYMACKDRSEHEAISEFLGLTSSETSPGLYVVHIAAEMAPVAKVGGLGDVISGLGKALQKKGHLVEVVLPKYDCMQYDRVTDLRALDVVIESYFDGQLFKNKIWVGTVEGLPVYFIEPHHPDKFFWRGQFYGENDDFRRFSYFSRAALEFILQAGKNPDIIHCHDWQTAFIAPLYWEIFAPKGLNSSRICFTCHNFEYQGTARASELESCGLDSHHLNKPDRMQDNSAHDRVNSVKGAVVFSNIVTTVSPTYAQEVRTAEGGKGLHSTLSAHTKKFIGILNGIDTDIWNPATDTFLEVQYNANDLQGKAENKEALRRNLGLSSADVKRPLVGCITRLVPQKGVHLIRHAIYLTLELGGQFVLLGSSPVPHIQREFEGIANHFQNHDHIRLILKYDESLSHAIYAASDMFIIPSIFEPCGLTQMISMRYGAVPIVRQTGGLNDSVFDVDDDTIPSQFRNGFTFLNADEKGLNGALVRAINLFKNDPESWKQLVQKVMNIDFSWDSSAAQYEELYLKSVTRARAAKRA*

Promoter(3k):

>AM05G028480.1
ACTTTAGACCAATTTTCCGTAGCTTCATTTGTGCTTACACATAAAAGAAGAAAAGAGTAGATCGTGTTACAAATCAGTTGTCTTGGCTTCGAAGAAATTCAAGATTCATTCATGTTCAATTTCTGTTGTCATTTTTTGACTTGTTACATCTGTGAAGGAGAAGGTAATATAATGTATATTCATTTTGATAATCTTAGCAGAAACGTGTTGTCATACCCTTTGTAAGTTGTAACAATAGTTTTGTTCTTTTTTTTTTCACAATATTTTTGTTTTAATAGCCATAATTGCTAATGTTGCCATTTAATTGCGGCCTAATACTAGTGTGAACCATAAAAAAAATTATTTAGTCGACAAATTTTCTGAGTTTACAAGAAATGGAATCTGTAATTCCCGTGTTAAAATATTACATGCAGCCCTTAAGAGACCCATAGTCGGACTTGTTGAAATTCTATTACCCTCATAGTGGTGGGGGAGTGGGGTAGAAGGACTACACTGCTCTTTTGCCCATTAGTGAATCCTAGCAGTTAATTTCAAAATGTTGAATATCTAATGGTACTAATCTCGTATTCATGTATGCACCTTCCAAAGGGGGGCATGAGAAAACGCACACTGTAAAATATCTGAAAAAAAAAAACAGTAAAATACCAAAGAAAAAAAACATGACAAAAGAAGCATAGGCAGAAATCATGTTCGAACCAAATGATTGAGAAATCTGGAATCTCAATAATTTTATTGTTAACAATAACACATTGAGTAACACAATTTGTCTTGAAATATTTAATGAAATTATTTCAAGGTGACCGGTTTGCCTTCGTTTCTAAAGATCTATTGAAGAAGATAGATCTACTAGAAGACTATTCAAGCACTGCGAATGATTACTGTAGCGATTGTGTTTTACTGAAGGCAAATTCATCAAAGTTAATTGAAGTGGGGCAGCTTTTTTACGGACCATGATTCACTGCGGTCACTGCTTTTTGCGGTCACCGCAGTTAACTACTCACTCCGTCCCATATTATATGTCGTTCTAATCAGAAAGTGTTGTCCCATATTATATGACGTTTTACAATACCAATGCATCGTTAATATTTTTTTCTATCATACCCTTCATTTAATAACCTCTCTTCTTTCAATTCTATTAAATTTATCTTCCCAATGTCATTAATTAGGGACAATTTTGTAAAGTAACTCAAAATTTCTCTTCCCCATACAAAATTAACTACTTTTCTTTTTCTTAATTTGTGTGAAATGTCCAAAACATCATATAATATGGGACGGAGCGAGTACTCTATTAGCCATTGGATCCACTCATTTTGATATCATGGCTCTTGAATTATTTGGTATTAAAAAAGTAAAAATAATTGAAAGTGGAGAGAAATAGATAGAGACAACTACAGAGAATCGGTATCCCTTCTTTACCCATTGTGTAAGATCTTCTCTTTCTCTTCAAAAAAAAAAAAAAAAAAAAAAACCTTGAAAACAGAGTCACTTCAAAGGTCAAACAAACACACTAATTGCCACACTGTTTCTTAAAATGGCAGTCTAGGAAGAACGTGGAGCAAAACACCTTTTTGTGGGACAACGTTACTTTTTTTTTTTGGTATAAATCGGTTTTCTTCTATGGGCAACTGTAGACACTAATCTCTCGAGTCTGAATTCGAACCCAGAAGCTTAATTAAGTCAAAAGAGACCCTACCATCTCATCCAAGTGCTCTTGGATTGACGACATTACCTTTGCTTAGAAAAAGACAAGGAAAGGAGACAAAAATTGAAATTCACAATGGAAAAGAAATCATTTGTCACAGAGGGATTATGCTTAGAAAAAGAAAAAATTACTTCCTTAGTTTAATATCTTAATTTCTGGTTTAAAATTTGTGCTCATTTCAATTTACTCTTGCATGCTCTATAGTGTTAATGATATTGCCCTAATTAGAGTGTTTTTTTTTACTTTAGACAACTTTTTTTTGTTATGTAGATGGAGTGGTCATTGCCATTAAAAACTCACACACACAACTGTGAGATCTCGAAATTGTACATAAAAAAATTGGGTTATGATTCGCGGCATAATTAATGGTGTAGATTGTGCATGTGATACATGCACATACTTTTTTTTTTAGATAAACTTGCCAGACTAACGTTTAGATAGAATACAAAACTGAATTGAAACAAAAAACAATAATATCTTAAATCTAGAAATTAAAATAAACGACTGACAAAAGTTTTAACAAGCTTTGGTCAAAAAAAAAGTTTTAACAAGCAATTTTGTTAAGAAAATATTTTCTTCATCGTTTATATATTTTTGGAGAAAATAATAAATAGAGAGATCTTGATTCTTAAATCTTGATTCACTTTTGTCTCGGTTGCTTAGCTTCTCCATCCCTGGGAAAATGTAGCGTACATTGCAACTCAAGGAAACAATATGAAATCGCCGATAATCTGCCTATCAGCGATATCAAAAGTGACCAAGCTTTTTTTTGAAAAACAATGTTAGTAGGGGTGGGAGGATGTTAGTTTCTAGGGTTTGAACCCTGAACCTCTTTTTTACACTCTTTTAGTGCACTCCTTCGATGTTCTTAGCTCACCAACTGAACTACCTACTTATAAAAGCGACGAAACTGAACTTAACACACGTTACCGGTAACGAACGACTAACGCGGGCTTCCTCACTCAAATGACGTGGCAAAGCACCACGCCCTCTCAGCTCTCTTTCTCTTCACCTCACAAACATTCACAGTTCAAATAAACAAATAAAAAAAACAAAATAGATTCTTTTTTCCCAAAACAAAAATAAAAAAATAAATGATTCCATGTGGGGATGTGGCATATACGGTGAAGGGGCAACAACCAAGCAACCAAACTCAAAAGACGATTTTACGCTTGCGACAAACAAGAAAAAAGAAAGAAGAAACCGTTACTCCTCTTTCTCGCTCTTCTCATCCTCTCTCTTCAGATTTTTTGTGTACTCAATACACAGAGTGATTGATTACTCCATTGGTTCAAATA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF08323.14	Glyco_transf_5	512	751	8.00E-64
PF13439.9	Glyco_transf_4	525	766	1.20E-08
PF00534.23	Glycos_transf_1	806	946	1.40E-08

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	GT5

Gene Ontology

GO term	Description	Category
GO:0019252	starch biosynthetic process	Biological Process
GO:0004373	alpha-1,4-glucan glucosyltransferase (UDP-glucose donor) activity	Molecular Function
GO:0009501	amyloplast	Cellular Component
GO:0009507	chloroplast	Cellular Component

InterPro

InterPro term	Description
IPR013534	Starch synthase, catalytic domain
IPR001296	Glycosyl transferase, family 1
IPR011835	Bacterial/plant glycogen synthase

trEMBL

trEMBL term	Description
A0A9D4VN84	_

SwissProt

SwissProt term	Description
SSY4_ARATH	Probable starch synthase 4, chloroplastic/amyloplastic

KEGG

KO	Description	Enzyme
K00703	starch synthase	[EC: 2.4.1.21]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G18240	starch synthase 4
Medicago sativa L.	MsG0480022763.01.T01	_
Oryza sativa L.	LOC_Os05g45720.1	starch synthase, putative, expressed
Cucumis sativus L.	Csa000703	_
Glycyrrhiza uralensis Fisch.	Glyur000183s00013022.1	_
Codonopsis lanceolata	Cl_chr03_08910T	_
Arachis hypogaea L.	AH03G46410.2	Probable starch synthase 4, chloroplastic/amyloplastic like

Expression pattern