Gene detail

Detail information of Am05G027240.1 Annotation

Gene ID	Annotation
Am05G027240.1	translation initiation factor 3 subunit H1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G027240.1	mRNA	Chr05	146387954	146391922	-

Sequences

CDS:

>Am05G027240.1
ATGGCTACCACTACAACTAGGTCTTTTCTCCAAGTGGCCGCAACTGAAGAGGTTGCAACCCCTCTTAGAGTCGTCCAGATTGAAGGACTGGTTATCCTGAAGATAATTAAGCATTGTAAGGACCACTCACCTTCTTTAGTCACCGGACAACTTCTTGGATTGGATGTTGGCAGTGTTCTTGAAGTTACTAACTGCTTCCCTTTTCCGATGAGGGAGGACGAGGAGGAAATTGAAGCTGATGGTGCTAATTACCAGCTTGAAATGATGAGATGTCTGAGAGAGGTTAATGTGGACAATAATACCGTTGGATGGTACCAGTCTACTTTACTTGGCTCCTATCAAACTGTTGAGCTGATTGAAACCTTTATGAATTACCAGGAGAATATTAGACGCTGTGTTTGCATAATATATGATCCATCAAGGTCTGAACAAGGTGTCCTAGCACTGAAGGCCTTGAAGCTTTCTGACTCATTCATGGAACTCTATCGTAGCAATAACTTTACTGGAGAGAAATTGAGAGAGAAGAACTTATCATGGGTGGATATCTTTGAGGAAATACCTATCAAAGTCTCAAATTCTGCTCTTATCAGTGCTTTCATGACAGAGCTGGAACCTGAGACACCAGTCACCCAGTGTGATTATGATCGATTGCAATTGTCTACTAGTTCATTAATGGAGAGAAATATGGAATTTTTGATCGAGTGCATGGATGATTTGTCACTAGAACAACAAAAGTTTCAATTCTACTATCGAAGCTTGTCTCGTCAGCAGGCTCAACAGCAAGCATGGCTTCAAAAGAGAAGGGCGGAGAACATGGCACGCAAAGCTTCTGGAGAGGAGCCTTTGCCGGAGGAAGATCCTTCAAACCCCATTTTCAAGCCGCTCCCAGAGCCGTCACGGTTGGAGAGCTTCCTCATAACAAATCAAATTTCCAACTACTGCAACCAAATCAATGGGGTTTCGGGGCAAAGCTTTAACAGACTCTATTTGATGAAGGCTTTGCATGAGGAATGA

Protein:

Promoter(3k):

>AM05G027240.1
AGATACAATCTCAATGAGCTCTTTCGTGACCCCTGACCTTAGCCTCTCGATATTTTCTTTTACATGTCTTTTCACTTGCACTGGTAGCACAACCCGAAAGATTATTTTCAATCCCAACGGAGAACCCCACCCGACAATAGCTATTGACGGGTCAACATGGATATTGGGCCTTGGCTTCGGGCTCATGACTTCCATTCGCCAAGTATGCTATTAACTAGGATCGTCATTCCCCTTGGTGTTTTATGATTTACTTGACACTTAGGTCATTTTCTCCCTCGATACATCAATTACTCGATTCGTTACAAACCTTAACCCTAAGTTTACTCTCGTTGTATCACAACATCCTCGATATATAGTTTATCTTTGTTTAATAATCATTGGGAAGGGTTAAGAAAGGGGTTAGAGAAGGATTGGAATCAAAAGGAATGGAATTGGATAGCTTTTAAAAATGGTGACAGAAGGTTTGGCCCGGACCGGGCTTGCCAAAAGTTTTGCAACGTGAGGTAATAGGGGAGGACGCACGGTCTGGGCCTAGAGGCGCACGGACTGGGCACCTCCATCAGACTTGTAAAAATTGCCATTTTCGTGTAAAAATTGCCATTCCGATGATTCCAATACTCGCCCCTACTCCACTCTTAACGCATCAACAGTTAATAACAACACTTTTAACACCCTTAAACAATCAATTTATATATATCAACCAAACAATCAGTTAGAACCACATTATGACCTTCAATCACACAACTCTTTTTCAACACAAAATCACAACTATGACTTCCCAATGAACACAGTTTCAGGTTTTCACCAAAACAAACACACATGCAACACTGAAACTTCAGATTTAACAACATGCAACAATCCAAATCATCAAACACTCAATTTTTCGTGAAGAGCTCACCTTGGAATGTCGAATATATTCAACACACAAACAAGCAAAGTGTGAAGTGAAGTGCAACCCAAGAGCTACCCCATACTTAGATTCAAAACTCAGCTTCTAAAACCCCTCCTAGGCTGCTTCAATCTACAATGTAGGTACTGAGAAGTCCTAATCCATCTTTCAAAGCAACATGCAAGTCGATTTTCTACTTAATTTAGCTCACCTCACCATTGTTGCGAAAATGGATATGGAAATGAAGGGAAGGAGATGTTTTCAGCTGAACTTCAAGTTCTAGTCACTCTAAGGATGATGAAATCGAAATTGTGGGAAAAAATGGTGAAGATGTTTCTGATTTTGGCTTGGGGTTTCTCCTCTTCCTCTCTTCTCCTTTTTTCTCTTCGCACTCCCTTCTCTTTTCTCTCAACTCTTTCTTTTCTTTCTTGATTTGTGTGTGTGTATTTGAGTGAAAAGTGTGGGAGTGAGACTGAAAGTGAGTGGTTTGGTTTCAGCTGAGGGTGTTTTAAAGGAAACTGAAATTCCTAAATTACCCTTATGCTATTTGCACCACACCTATTTACCCATACACTACCCATATGAATTGAACAATTAACACACCAATGCATTTCAACTATTTGACTTAGATATGTGTTCAAACAATTAAACTATCAACCATGGACTTAAGTAAATTAAGCAACTCAATCATGAACCCAAACCACATTCAATCAACTCGATTAGCAATAATTTATATAAATTATCAACTAATCTCAAGAATTAAACTTAGCAACTTTGGGGATATTACACATAACCCGCTTTCAAATCAAACAAGTTAGGCTAGAGTTGTCCTTATGCCCTAATTTTTAGCAAATCAAGAGCACTATATAAAAATGCCAAAACACTAGCTTATAATAAGTTTTTAGTGGTTGTTTGATAACCTATAACTTATATATTTTTCGCTAGGCGATAACATTTTTTCAAATTCTACACGGAGTAGCGGTTAAACTAATTAATTGAACTATGAGAATGTTTGGATTGACTTATTTGGCCTTATCTACTTACATAAGCACGTGTGAAATTGTCTATGAGAGTGTATGAAAACTACTTGTGATGTTCGTTTGTCTCTTTTAGCTTTCAATATGCTCTCCAAAATAACTTATAGCTTAAATGAAAAAAAATCATTTTATTCAATATTTTGTTGTAGAAATGGCTTTTAGATAAACATTTACATAATAAGTGATTGTGCCATAAGTACTCAATTAAGTGATTATGCTATTATAAAAATAAAAATTCAATAAGTTTCTTTTGACAAACTCAAAAAATAAATAAAATCAAGAAGTTAGTAGTTACGAAATACTTGCTACAACCTTAAATGCTATTGCTGAACAAAAATTCCACACCAAACCATAGTCATCCCTATCTCACCCTTCTCTTTACTCATCTACTCCTTTTCGCCCATCTTTGGAAGATGAGTGGTTTTAAATAAAAGAAGTGATATAAAATTAAATTTATTATTAAAACAGTATAGAAATAGAAAATTAATTTATTAGCTTATGAAATATCGTTGTCACAAGGGTAGTTATGTCATTAACATTATATATATATATATATATATATATATATATAATTTTTTATTATCTTATCTAAAATATATAATAAAATAATATATATAATAGGATATGTTATCGTTTTTTCAAATTCTGCCGTATCCTATCTCTATCATGTTTCATATCATATGTTATATCTATCATATCCTAACATTGTGAGAGGGAAGTAATGGTGGTGGTTGCGAGAGGGAGGTGGTGGTGGTGGTGGTGGTGAGAGAGGGAAAGAGGTGATGGTGAGAGTGAGAGAGAGAAGAGAAAGAAAGTTTTCTATTCTTAGGAATATTATGGTCATTCCTTAAGTTAGGGGGGTGGAAGAGTAATGAGGAGGATGTGCCTATTATTATTTGAAAATTTGGGCCAATTTTAGATGGACTATTTGAGCCCAATTTTTAGCAAAACCTGCTCCGGCGCCGTTTATTCCTCTCCTTTCGAGGGTTCCTTCGTCGTCCTCCCAGTTACAGCACAGTTTATTCCCCTCCTTTCGATTTTCGCTGTGCTTGCTACGCTTGAGAGATTCAAAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF19445.2	eIF3h_C	143	336	4.90E-57
PF01398.24	JAB	23	126	3.90E-15

Gene family

Gene family	Subfamily
Ubiquitin Family	JAMM

Gene Ontology

GO term	Description	Category
GO:0003743	translation initiation factor activity	Molecular Function
GO:0016282	eukaryotic 43S preinitiation complex	Cellular Component
GO:0005852	eukaryotic translation initiation factor 3 complex	Cellular Component
GO:0008237	metallopeptidase activity	Molecular Function
GO:0005829	cytosol	Cellular Component

InterPro

InterPro term	Description
IPR037518	MPN domain
IPR000555	JAB1/MPN/MOV34 metalloenzyme domain
IPR027524	Eukaryotic translation initiation factor 3 subunit H
IPR045810	eIF3h, C-terminal

trEMBL

trEMBL term	Description
A0A1S2XQL9	_

SwissProt

SwissProt term	Description
EIF3H_ARATH	Eukaryotic translation initiation factor 3 subunit H

KEGG

KO	Description	Enzyme
K03247	translation initiation factor 3 subunit H

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G10840	translation initiation factor 3 subunit H1
Medicago sativa L.	MsG0780036859.01.T01	_
Oryza sativa L.	LOC_Os04g30780.1	eukaryotic translation initiation factor 3 subunit H, putative, expressed
Cucumis sativus L.	Csa002963	_
Glycyrrhiza uralensis Fisch.	Glyur000039s00004227.1	_
Codonopsis lanceolata	Cl_chr02_44540T	_
Arachis hypogaea L.	AH14G39110.1	Eukaryotic translation initiation factor 3 subunit H like

Expression pattern