Gene detail

Detail information of Am05G027130.1 Annotation

Gene ID	Annotation
Am05G027130.1	ZIM-LIKE 2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G027130.1	mRNA	Chr05	146151111	146159326	-

Sequences

CDS:

>Am05G027130.1
ATGGACTGGGTGAATCCATGTGAGAACGGCTTGGTCGTTGTTCCCATGCACTGTGCCAATGGAGTTTCGGGTTCTGATGATGGAGAAGAACCTGTACCTCCCATTGCTCCTTCTGCTCCACTCTCTCGTACCAGTGAACTCACCATTTCCTTTGAAGGCGAGGTCTATGTTTTCCCTGCCGTTACACCCGAAAAGGTGCAGGCTGTATTATTGCTCTTGGGAGGGCAAGACATACCAAATAGTGTCCCCGCCTCTGACTATTTGTTGCAGCAAAACTGTCAGGACATTCAGGGACTAGATGATCCTTCCCGAAGTTCAAAGCTTTCACGAAGAATTGCATCACTTGTTAGGTTCCGTGAAAAACGCAAAGAAAGATGTTTTGATAAGAAAATCCGGTACACTTGCCGTAAAGAGGTTGCTCAAAGGATGCATCGTAAGAATGGACAGTTCGCATCATTGAAGGAAGACTACAATTCTGCTGCTGAAAACCAGGATTCTAGCAATGGAACACCTTGCTCAGAATCTACTGAATGCAGATGCCAGCATTGTGGAATTAGTGAGAAGTCTACTCCAGCAATGCGTCGAGGACCGGCTGGTCCAAGATCTCTGTGCAATGCCTGTGGGCTTATGTGGGCAAATAAGGGAACATTGAGAGATCTCAGCAAATCAGGAAGGATTGCTTTTGAACAGAATGAGCAGGATACTTCAGCAGATATAAAGCCTTCAACAACAGAACCAGAAAATTCTTGCGTTGTGCAGGACAAGGAGGGAAGCCCTGAGGAAATTAAGCCTGTACCAATGGATGCCAGACAGTCACCTGAGACGAAAAATGGGCAGCATATACTTGAAGCTACTGAGGCAGTTCCTGACAAGTTGTCCATCCAACTGGAGAATAATGCACTCGGTCTGCATGAACAGGATATTATTGAGGATCTCGCTGATGCTTCTGGGACCGAATTTGAGATTCCTGCAGGTTTTGATGACCAGGTTGATATTGATGATTCCAACATGAGGACTTACTGGCTGTGA

Protein:

Promoter(3k):

>AM05G027130.1
CTTCTTCTCGGTTAATCTATTTTCACATAAAAGGGGTTGATTTAGGGTTTACAAAATACATAAGTGTTGGAAGAACCTGATGTTGATAAAGTGTTTTCGTTTATACTTCTTGCTTTTCGGTTGTCCCCAACATTTTTTTGTTTCTCATTCTTCTTCTTCCCTCTTCTTCGTTCTTCTTCTTTCTTTTTCTCCTTTCTTCTTTCTTCTTCCCGCTTTTCCGTTGTCCCCGGAGCTTCTTTCTCTCTCTTTCTTCTACGTTCTACTTCTCTCTTCTTCCTTTTTCTTCTCAGATTTGGTTCTCCAAAGATAAATGACCAAAAGGCAATTTAGCCTTTTTTTATCAAAAAGAAGTATGAAATCATTGGAGGAAGTGAATTCAATTTTATTTGAGTTTGAATTTGCCCCCCAAAAGTATTGATGAGGATGTGTTTTGGACATAAAATGGCAAATTATTGATGATATTGTGAGGACAATTAGGTATTTTTATTAGTAGGTAAATGACATCAATTTATAATAGGTACCCTTTGTGATAACTACCAAATATACACTAAAACATGAGTTGAGGTCCTCGATCGCAATTGTCTACAACATTTTCTTACTGCAAACATATTAACCATTTGATTAAACAAGCGACTTGGATATATTGATATATATTAATAACATATATTAATAATAATAAAAAGAGGTACGGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGAAGCACAGGTAAAAAAACTTCATCTTCTCCAACTCTTGCTTATTATTGTTTAAAATTTTTATACTGCTCTAAATTTGTGTGAGAGTGTGGGAAAAATTGAAGTATCAAGGTCACTTTTCAGATCTCTTGTGAGTTGCAGCTCGAGGATCTCATGCAAAGCCGTTACTCGTGGCCAGCCAAATTTTCCGGCGTAGATTAGTGATCGACAAAACCGGTAGAAACTGCACACAAAAACAAAACATGATAAAAAATATATATTAAATTGTTTGTTTTATCAAATGGTTGATACTAGCTTTGTTCAAACTTCTTCCTCTTTGAGACCTCCTCCTCCTATCTTCCATTCAAGATTCCATCTTCCTCTCTCCTCTTTCATTGGCTTATTTTCTTGTCTTCTTTTAATCACACGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATACATACATACATACATACATACATACATACATACATACTGCTTCTTTCCCCTTTTTATTTTATCAACTTACTCTCATTCTTTATCTCTATATATTCTTTTATTTTAATAACCCAATTTACTAACTACACCTTTTTGTATTGATTACTACTCTTTTTTATCCTCTTTTAATTTTATGTTAGTTTTACATTCTTCACTTATTTTGATCTCTTTTGATTATTTTGGTGTGCACCCCCTTCTTAATTGGCAACACCCCCTTTTCTTTTCAACTTGAGCCAATTACACACTAATCCTAATTTTACTTCTCATTTTACTTAAAATTAACTTTTACAACATTATTCTGTCAAAAAAAGCTTTTATAACATTATTCTTTTCACTCATCTCTTCTAAATTCTTATTTATTAATCTTAATTATATATTCAATTAGTTAACCAAACCATTTAATTGATTTTTATTTATAATTTACTTTGTTTACCATAACTATAATTTTGTTGGGGGTGTTACAGAGAGTTCACAAATATATTTTCGTGAGAATTATCATTTTCAAAAATGAAGAAAATATTAACATACTATACGCTTCTTTTACGCCCAAACAACACAACACTAGATAATAGTAATACATACTCTCACTAACTATATTATATGTAACAAAACCCTAGTTCACACAAATGGATAATTTTGTGTGAAATGATATATAATTAAGGCTTAAATATCATTTACCATTTGCAAATATCACGTTTATCCATTTACCCCCCTGCAAAAAAAAACTTTCAAAACAAACATTGCAAATATTAAGTGTTTTTAGTTACCCCTTGCTGTTAGTTTTAGCTAACAACGTTGAGTCTATGCTGACTTTGCAGAAAGGTAACTAGAAACACTTAATATTTGCAGGGGTAACTAGATCCACTTAATATTTGCAGGGAGGTAAATGGATAAACGTGATATTTGTAGGGGTAACTAGATCTAAATGGCAGCCAAAACTAACGTTGCAAGGTTTGTTTTGAAAGTTTTTTTTTGCAGGGGGTAAATGGATAAACGTGATATTTGCAGGGGTAAATGATATTTAAGCCTATAATTAATACTAGATCAATTGGTAGTGGGAATGCATTGAGCATGTACTTGAGCCCCAGGGTACATGGTTCGATTCCCATGGAAGGTAAAAACTCCACAAGGGGTGGAGAAGGTCATGAGTGCATCGCTGGGTAGCCTACTAAGTAAGAAAAGGGCCCAGAATGTTATAAGTTCGGTGTTGAACAGTACAAAATTTGTTCCTAAAAATGGGCACCGATTAGTTATTCCTTGAAAATGTTATTAACATTTTGTAATTAGCTAGTGATCGTCCGACAAAATATCACAAAAAAAAAGCGTTAAAAAAACTGAACTCACAAAAAAAAACCTTAAAAAAATTGTTTCCTTGTGAGAGAGAGTGTGAGTTTCGTTTCAGTGGCAGTGTTTCCTCAAGTCGAGTCCTTTGTCTAGGAAACAGCACTCTATATTTTCTTTCCATTTCCATTCTACACCTTTTCTAATTTCTTTCCAACTCACTCCTCTTATTCTCATTATCCTTCTTCTCCTTTAGGGTTCCATTCAGCAACTCAAATTTCCGCTTCATTTTTTCGATTCCTCTGTTTGTGAAGGTGAGTGATGCTTGAGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF06203.17	CCT	111	152	2.40E-14
PF00320.30	GATA	180	216	1.80E-13
PF06200.17	tify	44	74	2.20E-11
PF09425.13	Jas_motif	112	133	7.20E-07

Gene family

Gene family	Subfamily
Transcription Factors Family	C2C2-GATA
Transcription Factors Family	Others
Transcription Factors Family	Tify

Gene Ontology

GO term	Description	Category
GO:0043565	sequence-specific DNA binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0008270	zinc ion binding	Molecular Function
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR013088	Zinc finger, NHR/GATA-type
IPR000679	Zinc finger, GATA-type
IPR010399	Tify domain
IPR045280	GATA transcription factor TIFY-like
IPR010402	CCT domain

trEMBL

trEMBL term	Description
A0A1S2YHF6	_

SwissProt

SwissProt term	Description
GAT28_ARATH	GATA transcription factor 28

KEGG

KO	Description	Enzyme
K13464	jasmonate ZIM domain-containing protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G51600	ZIM-LIKE 2
Medicago sativa L.	MsG0480022615.01.T01	_
Oryza sativa L.	LOC_Os03g47970.1	GATA transcription factor 25, putative, expressed
Cucumis sativus L.	Csa003866	_
Glycyrrhiza uralensis Fisch.	Glyur000926s00019331.1	_
Codonopsis lanceolata	Cl_chr02_27150T	_
Arachis hypogaea L.	AH20G08070.1	GATA transcription factor 24 like

Expression pattern