Gene detail

Detail information of Am05G026480.1 Annotation

Gene ID	Annotation
Am05G026480.1	Tetratricopeptide repeat (TPR)-like superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G026480.1	mRNA	Chr05	144838383	144839714	+

Sequences

CDS:

>Am05G026480.1
ATGATGATGTATCGAATTCTTCACCGCAGCTTATGCACCTCTACTACAGAGTCAACCACCGTGATCCCCACCAGCATCAAGTCCATTTCACAGGACCTCTACAAGGAAGTCCACTTAAAAAAACTAGTCGAGAAGTTCAAGCTAGCTTCCGACGTTGAACGCTTTCGAACCAAAACCGGCATCTATGAAGACACCGTCCGCCGTCTCGCCCGCGCCAAACGTTTCCGGTGGGTCCGCGACATCCTCGAACATCAGAAGAAGTACTCTGACATTACCAACGAAGGTTTCTCAGCGCGCATTATTACCCTCTATGGTAAATCCGGAATGCCCAGATATGCACAGAAGATGTTTGATGAAATGCCGCAGAAAAACTGCAACCGTACCGTGTTCTCTCTCAATGCCCTCTTGGCTGCTTACCTTCATTCCAAACAATACGACGTCGTTGAACGCCTTTTCAAGGAGCTTCCCACTCAGCTCTCTCTTGAACCTAATCTGGTTTCTTACAATACTCTCATTAAGGCGATGATCAAAAAGGGGTCTCTTGATTCTGCGGTTTCGATGCTTGTGGAGATGGAGGAGAAGGGTGTGACTCCTGATTTAATCACGTTTAACACATTGCTTGATGGGTTATATGAAAAGGGTCGTTTTGAGGATGGTGAGAAACTGTGGAAACAAATGGGGGAGAAGAATGTTGTTCCTAATATCAGAAGTTATGATGCCAGGTTATTGGGGTTGGCTGTGGTGAAGAAAACTAGTGAAGCTGTTGAGTTTTATGAGGAAATGAAGAAGAAGAAGGGTATCAAGCCTGATCTTTTTAGTATCAATTCTTTGATTAAAGGTTTTGTGAATGAGGGGAATTTGGAGGAAGCTAAAAAGTGGTTTGGTGAAATTCGAAAAACTGAATTTGAATTTGACCCTGATAAGGGCAGTTATGCTATAATTGTTCCTTTTCTGTGTGAGAAGGGAGATTTGAAGGAGGTTATTGAGATGGTGAAGGAAATATTTAACAATAAGTGTCTTGTTGATGCGTCGTTGCTGCAGCTTGTAGTGGACAAATTGGTGAGTGAGTCAATGGTTTCAGAGGCCAAGGAGATTGTGGAGCTAGGGAAAACCAATAGGTACTGTCGCTACAAGCTAAATTTGCCAGTAGAGGAGTGA

Protein:

Promoter(3k):

>AM05G026480.1
TTCTGTCCTTCCTTTCCCTTTTACTCACAGAAATTGAGTTTATTTTCCTAAATTGTTGGGAAAAAATTATCCTTAGAAATTGGTAGTTTTGGAGTTATAACTTCATAAGAAATTATCTTAAAAAAAAACTTCATAAGAAATATTGTAATAAGTTTATGGAAGCATTACAAGTTGATTGGACAATAACATAATCTAAAGTCTATTTCAGTTTGATTGATGAATGCATAAGAAATAAGTTGTCCATTAGTCTAAATGATTTTGATAATATTTGGCAACAATTGTTTGAGTCTATGAACTTCAAGTGGTTCACCATTCATTTCCTGAAAAATAACAAACATAGAAACATAATCAATATAAAATCTAATACCACTTCAAATCTTGAAATTAAAACAAAAACATACTATCATTTGTAGAAATGTATCTCAAAGATGGCATATTGCAATATAAAGTCTATGAGCTTTTCTTAATAGGTTTATGATATTGTAGTTAGCTTTTCATAGACATTCTTCTATTTCCTAGGATCACCATCACCTGTATGCACATTGTAATCAAATATGCTCCTTTTAAGGTTATGACACTGGTGTCTATCACTTCAATGTCCAAATCATTCATGGCCTTCACTAATTTGTTGAACCTTCCTCTCTTTTGCTCAATGACCACCTTTACCGACATTTTATTCCCATTAATTTCTGTCATTTGAACCTCTTCCTGTAGAAATAAACTTCACCATGATTACTAATTATAGTATACTATACACATAGAGATTCATTCAGTTAATGCAAAAAAAAAACCGAAAGAATTTGTAAATAACCTGTATCCCCCATTTCTTCATCTCTTGTACAGCACAAAAATCTTGTATGTTTGTATCTGCTATTTCCTCTGAGGTTGCTTCCATTTGGTGAAGCTCTTGGCTAAGACTATCAACTTCATCTTTCAGCATCTTGATATAAGTTATAGCATCAACAATAATAGTTGCTTTGTTCATCTGAAAACCAAAAATTAAGATGCATAATCCGCTCCAGTTTTATCCTTTAATGTAGTAGTTAAAAACTAATCCCAAGTTGGTAGCTCAGTTGGCGAGCTAAGGGATATCGAAGGAGTGCACCAAATGAGTGCAAGAAGGAGATCCCGGGTTCAACTCCTGAAAACTAACATTCCCCCACCCCACTAACATTGCTTATCAAAAAAAAAAGGAAAAAAATACTGAATAAATCATTATAAAAAAGAGTATATATATATATATATATATATATATATATATATATATATATATAAGAAAGTGAGTTAAGTTTAGGTGGTTACATTTGTGATTATTGGTACTAAGGACCGTAGCATCAAAAGCCTGGTACTAAGCTTCTCCCTCCTCTTCCTTTCAGTCTCAAGGTTCTTTGATGTGAACTTTTTTGTGGCATCATCATCATTATTGTTCTTCTTCCTCATTTTGCCCCTATTGCTGCCATTTTCAGCATTAAAACACAACTCATCTAGAGACACACATAGCCTGTTTTCATATACATGTTCCATTGAGTCTCAAGAATGAAACGAGTATTGAGTTAAAATCTTTCAATGTCTGTTAGATATAAATTGAGAGAGCAACCATCTATTTAACCGCTTCTTGCAAAGCCATAATCATGTGATTTGAGGGGTTTTTCTATGGTCCCAAGTTAACATGTGTTTCTTATGTGTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAATGCTAGTTTAGGCCCATTGTTAGTTACATCTGCGTAACAGAAAGATTGATGTGATTACAAAATGAGTATTCAGTTATCAAATGGAAGGAGTGGTCAAATTACTCCTTTTGAAAAAAATTAATAAATCATTTATTAACTTTCTAATGAAATCTCACCACCACGTTATAAAGTAAAGCTTTAACTTCCAAAAAACATTGATGAAAAATGCAAATTAGTGACATTTCGTGTGTAGCTGGTGTTTTTTTTTTCCGGACCATTGTTGGTTACATACGGAGTGTTCCAATGATTTTATCGAAAGACTAATCCTTATTTGTGTTTAGTAGCAAATTTCGTACCGACTAATACCGAGTTTCTCTGCGGTGGGAATCAATCTCGGGAGAAATAAACTTGATTCTAACATTGTTTTAATGATTGATTTGTAAGGCTTTTGGCAGTTGGTCTTGTTGACTGCATAACGAGGTTGTTAGAGACTTAGAGTAATGGGCCACAAATTTGATGCTCTCTCCTTGCATTTGATGACAACATTTTGGTTCGTCCCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTTCTATAAATCATAATATAATTTAAGGGTGCTTCTAGAGTGAGAGAGCAAATCATATCCCTCACTGGTGAACCATTAAAATTGACCGTAGGTTATTGTGTAAATTATTATGAGTGGTTAAGATTTAATCAACCAGTATTACCGTTGATGAGTTTTTATGCTACATCTTATGGTCACATTTAATGGTTCACCGGTGAGAGATTTGATTTGCTCTCTCACCTTAGAAGCACCCTATAATTTAATTCATTAGTTTTTATACTAACCAAGATTTTCTTACGATTAAACTAGATAAAAAATTGTGTAAATAGAGTATACTACTAGGAGAGGTGGAAAAGTAATAGGGGGGAGGAGGAGAAGAACCCACTACCCAATCGTCCATAAGCCCAATGGTCAAAACCCGTTGGGCCAATAGAGGATTCTCCGAGCCCAAGCTGGTACTGCATAGGGTGTAGCACGTTCATTCTTTCAGAAGAGAAACCAAACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13041.9	PPR_2	163	210	1.80E-42
PF13041.9	PPR_2	198	239	1.80E-42
PF13041.9	PPR_2	248	280	1.80E-42
PF01535.23	PPR	166	196	6.00E-36
PF12854.10	PPR_1	161	192	3.10E-32
PF12854.10	PPR_1	194	226	3.10E-32
PF13812.9	PPR_3	160	207	1.30E-25
PF13812.9	PPR_3	222	283	1.30E-25
PF17177.7	PPR_long	144	234	2.10E-12

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0010019	chloroplast-nucleus signaling pathway	Biological Process
GO:0009507	chloroplast	Cellular Component
GO:0004519	endonuclease activity	Molecular Function
GO:0031930	mitochondria-nucleus signaling pathway	Biological Process

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR002885	Pentatricopeptide repeat

trEMBL

trEMBL term	Description
A0A9D4VP09	_

SwissProt

SwissProt term	Description
PPR82_ARATH	Small ribosomal subunit protein mS78 (rPPR3a)

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G55890	Tetratricopeptide repeat (TPR)-like superfamily protein
Medicago sativa L.	MsG0480022549.01.T01	_
Oryza sativa L.	LOC_Os01g57630.2	pentatricopeptide containing protein, putative, expressed
Cucumis sativus L.	Csa019553	_
Glycyrrhiza uralensis Fisch.	Glyur000044s00005195.1	_
Codonopsis lanceolata	Cl_chr03_27390T	_
Arachis hypogaea L.	AH03G35720.1	Pentatricopeptide repeat-containing protein At1g55890, mitochondrial like

Expression pattern