Gene detail

Detail information of Am05G025870.1 Annotation

Gene ID	Annotation
Am05G025870.1	C-terminal domain phosphatase-like 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G025870.1	mRNA	Chr05	142981232	142991591	-

Sequences

CDS:

>Am05G025870.1
ATGTATAAATCAGTGGTGTATCAAGGGGATGTGGTGTTGGGTGAGGTAGATATATACCCAGAAGATAACAACAAGAACTTCAATGTGAAGGAAATCCGAATAAGTCACTTTTCGCAACCCAGTGAGAGGTGTCCACCACTTGCTGTGCTTCACAGTGTTACCTCATGTGGTGTTTGCTTCAAAATGGAGTCAAAGACACAGCAGCAGGATCAGCTCTTTCACTTGCACTCCTTGTGTATCAGAGATAATAAGACTGCTGTTATGCCGCTATATGGAGACGAAATACATTTGGTTGCAATGCATTCCCGGAATGATGACAGACCATGTTTCTGGGGATTTGTTGTTGCTGCTGGACTATATAACTCATGCCTTGTGATGTTAAATCTCAGATGTTTGGGTATTGTGTTTGATCTTGATGAAACACTTATTGTAGCTAACACAATGCGCTCATTTGAAGATAGAATTGATGCACTGCAAAGAAAAATCAACTTGGAGGTAGATCCACAAAGAATTTCTGGCATGCAGGCAGAAGTCAAGCGCTACTTAGACGATAAGAGTATATTGAAGCAGTATGCTGAAAATGATCAGGTCTTTGATAATGGGAAATTGATAAAAGTTCAATCTGAGATTGTTCCAGCATTATCTGACAATCACCAGCCTATAGTTCGACCACTGATACGGCTTCACGAGAAAAACATTATTTTGACACGCATCAACCCGCAGATTCGCGATACAAGTGTTCTTGTGAGGTTGAGACCTGCATGGGAAGATCTTCGGAGCTACCTGATTGCAAGAGGGCGCAAGCGTTTTGAGGTTTTTGTTTGCACAATGGCTGAAAGGGACTACGCACTAGAAATGTGGAGACTTCTTGATCCAGGCTTGAATTTGATAAATTCTAGAGAACTATTAGGTCGCATTGTATGTGTGAAGTCGGGTTTGAAAAAGTCATTGTTTAATGTCTTCCAAGACGGCTCATGCCATCCAAAGATGGCGTTAGTGATTGATGATCGCTTGAAAGTGTGGGATGAAAAAGATCAACCTCGGGTGCATGTTGTCCCTGCATTTGCTCCATACTATGCTCCTCAAGCTGAGGCAACCAATACTGTCCCTGTCTTGTGTGTTGCAAGAAACGTTGCTTGCAATGTTAGGGGTGGCTTCTTTAAGGATTTTGATGACGATCTTCTACAAAAGGTTCCTCAAATTGCCTACGAAGATGATATCAAAGATATACCTCCTGTTCCAGACGTGAGTAATTATCTATCAGAGGATGATGGATCTACTTCCAATGGAAACAGAGATCCATTATTGTTTGATGGCATGGCAGATGCCGAGGTAGAAAGAAAACTGAAGGATGCACTATCAGCAGCTTCTGCTATTCCTATGACAACTGCTAATTTAGATCCCAGGCTTACTTCTTCTGCTCTTCAGTACACCATGGTATCTTCTGGTTCAGTTCCACCTCCTACAGCACAAGCATCTACGATGCAATTTTCCCATTTACAAATCCCACAACCTGCTGCTCTAGTAAAGCCAATGGGTCAAGTTTCCCCTTTCGAATCAAGCTTGCATAGTTCTCCTGCTAGAGAAGAAGGTGAAGTACCTGAATCAGAATTAGACCCAGATACACGGCGTAGGCTTCTCATATTGCAACATGGACAAGATATAAGGGATCATGCATCTAGCGAGCCTCCATTTCCCGCTAAACATCCGATACAAGCTTCCTCTCATCCTATACAAGCTTCCACTCGTGTACCACTGCGTGGGGGATGGTTTCCTGTAGAAGAGGAGATTGGTTCTCAGCCAGTAAACCGGGCAGTACCCAAAGATTTTCCTTTAGATTCTGGTCCATTGCGTATTGAGAAGCACCGACCTCATCATCCATCCTTTTTCCCTAAGGTTGACAGCTCTATTTCATCTGATAGGATTCTCCATGAAAACCAACAAAGAATGCCAAAGGAGATGTATCATAGAGATGATCGCTCAAGAGTAAGCCACATGCTTTCTAGCTATCATTCTTTACCCGGTGATGACATCCCCTTTGGTAGGTCATCTTCCAGCCACAGTCTTGACTCTGAATCTGGTCATTCTCTTCTGCATGCGGATACTCCAGCTGTAGTGTTACAGGAAATTGCACTGAAGTGTGGAACTAAGGTGGAATTTACGCCATCTTTGGTTGCTAGCGCAGAACTGCAGTTCTCCATCGAGGCGTGGTTTAATGGGAAAAAAATTGGTCATGGATTTGGCCGAACTAGAAAGGAAGCTCAACACAAAGCTGCTGAGGATTCTATTAAACATTTGGCTGATATGTATTTGTCTCGTGCGAAAGATGAGCCTGGTTCCACATATGGTGATGTGAGTGGGTTTCCTAATGCAAATGACAATGGTTATGTGGGTAGTGTCAGTTCTCTTGTTAATCAGCCATTGCCTAAAGAGGAGTCAGCCTCATTTTCAGCTGCATCAGATCCATCAAGAGTTTTAGATCCTAGGTTGGAGGTCTCTAAGAGGTCAATGGGTTCAATCTCTGCTCTCAAAGAATTGTGCACAATGGAGGGTCTTGGTGTCAGTTTTCTATCTCTGCCCGCTCAAGGGTCAACAAATTCAGTTCATAGAGATGAAGTACATGCACAGGTCGAGATAGATGGCCAGGTCTTTGGTAAAGGGATCGGATTAACATGGGATGAGGCTAAAATGCAGGCTGCTGAGAAGGCACTTGGAAGTCTAAGAACAACATATGGTCAAAGCATTCAGAGACGACAGAGTTCTCCCAGGTCTTTTACTTTGATTTGCAGATTGTGTATTTTTAATTTTCTTTGCATGTTTTATAATGGATGTACTAAAAGTCTATACCCTCCAATGTGTTGTGCACTTTTGTGGTGGCTTGTGCACCCTTTTGAATTTAGCAGCTAG

Protein:

Promoter(3k):

>AM05G025870.1
GGCCCATATTCAGAAAATCTGGCCCAATCAGTCAACGGTTCAGATACCTCTGCAAGATCTTACGACTCAGGATCGTCAGAACGAACATCACTCAATCTCTATAAATACCACATTCAATACTCATAAATGTAAGCAATTTCTAAAACTAAACATTGATTCACTCAAACACTAACTTGAGCGTCGGAGTATTCTTGCAGGTACGACATCGCCCCCTCAAGATCGAACAATACTGATCAATAACGACATCTACTAACTACTTCGGATTATTCACCAAGATCGGAAGTACGGTACCGAACAGAACATAAATATCGTTGTTAGTTTTTCTACCAGGAATGATCACCTTTGAGATGCCCAAGCTTTGAAAATTCAAGATATGCATCTTACAATGTATTGAAACTAAAAACGGAGGAAATCTAATTGATACATTGCAAAGAGCTAGAGATACTAAATGAGGTTATCATTTTAACTCAATATGTAGTTTCTTAAGAACGTATATTGCAATTTGCAACATGCTTTGTTCTACGTAATATTTATAGGGGAGGAGCGAATCACACTCTCGAAGAGGTGATGCATATACACGTTACTTAACTTTAACTTCATTCGAGTAATTTGTGTTTATATTATTGCATTTGATGAAACAGATTATGGAAACAATCAACAAACGTTTTGTTTATAGCTTTACAACAATAGGTAAATTCTATGTATTTTGTTTCAACTACAGAATCATTTCTTCAAAAGTTTAAGAGATGATGGATAAGAGCCACTTGAGAATACTTATTGTTCTAACAATGTTATTGAAATTCTTGATGTAGATAGTCAGCATTTAAAAGCTCGATGTAACCCTCCTCATACAAATGATGACACATTTACTACTAAGGAGCATCATGATAGATATGACATATTTATTGCCATCATATACTTTCAATTGCAATAGTTTAATGACAACTTTTGTGACCAAACTATAAAATCAATAGCTATTTGGATTAGATTAATGCAATGAATGGAAGATTACTCATCACTAGATAATATCGAGATACAAACAAACAAAGTAATAGTATACATATACATGAATTAGAAATGCTATAGATAACCTCTCAAACACTCGCATGAAAATTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTGGGCCACGTCGTGTTTTTTTTTTAAAACCCCCGACCTAAAAACCGAATCTGCCTGTCTAAAAACTCTTAACAATTTTTAATTTATTTGAATTTGAAATTTTAAAATCGAGTTTATGTTCAACAGAGAGAGAAGTAGGACTAGGAAGGCCTCATGAGTTCACTGTTGTGTTGGTCATAGAGATCTTCCTTATGTGTAATTGTTCTCTGATTAAGATTTTAGCATATTCTCATTCTTTCGATTTCTACCTCTAGCACCAGATTTGTCCCATTATTCATTGAAACTCTTTATCGTTTATAGATATCTTTCATATTCTCCAAGCTTGCACATATCTGTTCATTGTTTGCAAATCTCGCCGATGGTAGAGAAAACACCATTTGAGCCCGTGGGTTTCTCCAATTAAATTTTCTCATTTTGAGAAGAATGATAATTTAGAATTTTAAACCAACACAGCTTGTTACCAGTAAAATGGGATTTTAAAAAAATGTGACGTGTCCCAATAAGATAGAGAGTTTCCGAAAGAGAGTGTAAACGAGAGATTGTGGGTAACACTTCTCCTACATCAGTCAATTACAATCAAGATTGATATCTAAAAATAACTAATTAATTTAACACAAATTAGTATCGATATCCTACCACTTAATATTGACACTTTCCTACCTTTACACATTGCTACTAACCCCCAGCTTGTTAACTCGCGATGAAATGAGGTGGACTCAGTTTCTCAACTACGACGCATTGATGAGTCATCTCGTGAAACCACTTTTTTGTCGGATTCAAAAAAAGCGAGGCAAACACAAAATATTTTGCCATCCATAAATAGGAACAATCAACTTTATTCCCCTAAATTCTCGCACGTAAAAAATCAATTACATAAAATCATCAATGTGTTTTATGGCCGAACTAACTCCCCAGCTTGCTAACTCGCGATGAAATGAGGTGGACTCAACTTCTCAACTACGACGCATTTATGAGTCGTCCTGTCTAACAACTTTCTTGTCGGATTCCGAATAAAGCGATGCGAACCCGGAACATTTTGCCATCCAAAAATAGGAACGATTCTTTATTGTCCTTCTCCTTACACGTAAAAAAATTACATCTACCAATATTTCGTTATAAAGTAGTTTTTATGATATGAAATATTTTTAATTTTTTTTTAGATAAGAAAATATTTTTAATATTTTGAATGTCAGGAGAGAGAGAGAGAAAATGTACTGATTATTGAAAAAGAAATAAAATGTGTATGAATTTTCCCCACTAAACTTACCAAACTTTTTTTTTTTTTATCAATTATAAAAAACCCTAGCAACTTTTCTAATGCTGATAGTATTATTATTTAATTGGAGTGGCTTACGCAATAGAGAGCAGTACTGTTTTTGACCTTTCGTTTTCTGGATCTAGGGTTTCACCTCTGACGACTTCCTCCTGAAACTTGAAAATTCATCATCTTCACAGATAAACCCATCTTCGAACCCTACCTTAAAATTACAATTTCTCACGCAAACCAAATCAATCGCCGGCGATCGAATCGGAGATTCACGATCAAACGCACCTGACAAGTGTTAGGGTTCTTCGAATATTATTATTTTTTGCCCCAATCGCCGTTATCATCACCTTCAATAACGGATCTAAAATTTTTCTTGAAAAAAAGGCCCTAATTTTTCATTCTATTTTATACATACATATTTTGTTGCTGGCAATGCAAAAATCAGATGAATCTTAAAGTGATCTTGACAGTGATTATGATGAATACTTTTTCCCTTACTTACATGGAATCTTGACGTAATTTCCAAAGACTTTGTTTGTGATTTGATTTGAAGGGACCAAAAAAAGAGGAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00035.29	dsrm	728	766	1.40E-14
PF03031.21	NIF	243	351	1.10E-08

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0030130	clathrin coat of trans-Golgi network vesicle	Cellular Component
GO:0003723	RNA binding	Molecular Function
GO:0005198	structural molecule activity	Molecular Function
GO:0006886	intracellular protein transport	Biological Process
GO:0016192	vesicle-mediated transport	Biological Process

InterPro

InterPro term	Description
IPR036412	HAD-like superfamily
IPR023214	HAD superfamily
IPR004274	FCP1 homology domain
IPR014720	Double-stranded RNA-binding domain
IPR039189	CTD phosphatase Fcp1

trEMBL

trEMBL term	Description
A0A371F8Z0	_

SwissProt

SwissProt term	Description
CPL1_ARATH	RNA polymerase II C-terminal domain phosphatase-like 1

KEGG

KO	Description	Enzyme
K18998	RNA polymerase II C-terminal domain phosphatase-like 1/2	[EC: 3.1.3.16]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G21670	C-terminal domain phosphatase-like 1
Medicago sativa L.	MsG0480022408.01.T01	_
Oryza sativa L.	LOC_Os02g42600.1	double-stranded RNA binding motif containing protein, expressed
Cucumis sativus L.	Csa000619	_
Glycyrrhiza uralensis Fisch.	Glyur000117s00007678.1	_
Codonopsis lanceolata	Cl_chr03_01970T	_
Arachis hypogaea L.	AH03G36650.1	RNA polymerase II C-terminal domain phosphatase-like 1 like

Expression pattern