Detail information of Am05G025860.1 Annotation
Gene IDAnnotation
Am05G025860.1 Tetratricopeptide repeat (TPR)-like superfamily protein
Network
Network CategoryRelationship Type
Global NetworkProtein-Protein interaction + Coexpression Positive and Negative
Top300 PCCCoexpression PositiveCoexpression Negative
Location (JBrowse)
GeneTypeChrStartEndStrand
Am05G025860.1mRNAChr05142966621142973128-

Sequences
CDS:
Protein:
Promoter(3k):

Pfam domain
Pfam accessionPfam nameProtein startProtein endE-value
PF13041.9PPR_2941381.20E-200
PF13041.9PPR_21562041.20E-200
PF13041.9PPR_22262741.20E-200
PF13041.9PPR_23163651.20E-200
PF13041.9PPR_23514001.20E-200
PF13041.9PPR_24224701.20E-200
PF13041.9PPR_24565051.20E-200
PF13041.9PPR_24915391.20E-200
PF13041.9PPR_25626071.20E-200
PF13041.9PPR_25966441.20E-200
PF13041.9PPR_26326781.20E-200
PF13041.9PPR_26657141.20E-200
PF13041.9PPR_27007481.20E-200
PF13041.9PPR_27738191.20E-200
PF13041.9PPR_28068531.20E-200
PF13041.9PPR_28408871.20E-200
PF13041.9PPR_28799211.20E-200
PF13041.9PPR_29109591.20E-200
PF12854.10PPR_11561845.10E-179
PF12854.10PPR_12222515.10E-179
PF12854.10PPR_12572875.10E-179
PF12854.10PPR_13123445.10E-179
PF12854.10PPR_13473795.10E-179
PF12854.10PPR_13824145.10E-179
PF12854.10PPR_14534845.10E-179
PF12854.10PPR_14885205.10E-179
PF12854.10PPR_15926245.10E-179
PF12854.10PPR_16626945.10E-179
PF12854.10PPR_16977285.10E-179
PF12854.10PPR_18018335.10E-179
PF12854.10PPR_18368695.10E-179
PF12854.10PPR_19069385.10E-179
PF01535.23PPR1581887.20E-145
PF01535.23PPR3193497.20E-145
PF01535.23PPR4594897.20E-145
PF01535.23PPR4945247.20E-145
PF01535.23PPR6686987.20E-145
PF01535.23PPR7037337.20E-145
PF01535.23PPR8448737.20E-145
PF01535.23PPR9149427.20E-145
PF13812.9PPR_33403969.60E-106
PF13812.9PPR_34134669.60E-106
PF13812.9PPR_34535049.60E-106
PF13812.9PPR_35846419.60E-106
PF13812.9PPR_36196779.60E-106
PF13812.9PPR_36547109.60E-106
PF13812.9PPR_36897479.60E-106
PF13812.9PPR_37948509.60E-106
PF13812.9PPR_38649229.60E-106
PF17177.7PPR_long4345448.50E-52
PF17177.7PPR_long5486488.50E-52
PF17177.7PPR_long6537638.50E-52
PF17177.7PPR_long8029538.50E-52
Gene family
Gene familySubfamily
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Gene Ontology
GO termDescriptionCategory
GO:0009507chloroplastCellular Component
GO:0031930mitochondria-nucleus signaling pathwayBiological Process
GO:0004407histone deacetylase activityMolecular Function
GO:0006338chromatin remodelingBiological Process
GO:0016020membraneCellular Component

InterPro
InterPro termDescription
IPR011990Tetratricopeptide-like helical domain superfamily
IPR002885Pentatricopeptide repeat

trEMBL
trEMBL termDescription
A0A1S2YIE9 _

SwissProt
SwissProt termDescription
PP381_ARATHPentatricopeptide repeat-containing protein At5g14770, mitochondrial

KEGG
KODescriptionEnzyme
K17710pentatricopeptide repeat domain-containing protein 1

Orthologous genes
SpeciesGene IDAnnotation
Arabidopsis thalianaAT5G14770 Tetratricopeptide repeat (TPR)-like superfamily protein
Medicago sativa L.MsG0480022408.01.T01 _
Oryza sativa L.LOC_Os02g57800.1PPR repeat containing protein, expressed
Cucumis sativus L.Csa001250 _
Glycyrrhiza uralensis Fisch.Glyur000117s00007676.1 _
Codonopsis lanceolataCl_chr02_09590T _
Arachis hypogaea L.AH14G36820.1Pentatricopeptide repeat-containing protein At5g14770, mitochondrial like

Expression pattern