Gene detail

Detail information of Am05G025780.1 Annotation

Gene ID	Annotation
Am05G025780.1	DNA mismatch repair protein MutS, type 2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G025780.1	mRNA	Chr05	142861593	142868772	-

Sequences

CDS:

>Am05G025780.1
ATGTTGGCAAATAAACGAAGTTGCCTTCTGCGCTCAAGGCATCAGCAAACCCAATCCACAACGGGAAGTAACTGCTCTGCTCAGCAACTCGGCAGGGACTCACCGATGCAACTCAGTAGTAACCTCTTCATTTCCGTGAAGAAACCCCTTATCTCTTTCACGCCCCGTTTCTCCTATTCGCCCGAGTCCAACTCAGTCCAAGCGGAGAGTCTCAAGACTCTCGAATGGAGTTCCATATGCAAGCAGCTCTCCGCATTCACCTCCACCTCTATGGCCTCCTCCGCAGCCATCAACGCCCGCTTGCCTATCGGCCAAACGCCACATGAGAGCCAGAAACTTCTCGATCAGACCTCTGCTGCCAGACTCGTCACTCAGCCCCTCGACTTCTCCGGTATCCATGACTTGACGGAAATTATCGCCGTCGCCGTTTCCGGTCAGTTACTAACCATCCCGGAGCTTTGCACCGTTCGTCGCACACTCACGGCCGCTCGGGAATTGTTAGAAGCATTGAAACACGCGGCTAATCATCAACAGAGGTACTCACCCCTACTTGAAATATTGCAAGATTGTAATTTCCTAGTGGGCTTGGAGCGTAAAATACAAATTTGCATAGATTGCAATCTTTCGGTAATTCTTGATAGAGCAAGTGAAGACCTGGAGATAATTAGATCGGAAAGGAAGAGGAACATAGATATTTTGGATTCTTTATTGAAGGAAGTATCATCTCGGATTTTTCAGGCTGGGGGTATAGACCGACCATTGATAACTAAACGTCGATCTAGAATGTGTGTGGGTATCAGGGCTTCCCATAGATATTTGCTTCCGGATGGTGTAGTTCTGAATGTCAGCAGCTCTGGAGCAACATACTTTATGGAACCCAAAGAAGCAATAGATCTGAACAACATGGAAGTTAGGCTTTCTAACTCTGAGAAGGCTGAGGAAAGAGCAATTTTGAGTATGCTTGCATCTGAAATAGCAAATTCAGAATCAGAGATAAATTATTTATTGGATAAAATTCTTGAGGTTGATCTTGCTTTTGCAAGAGCTGCCTATGCTCAATGGATGAATGGGGTATGTCCAATTTTTAGTTTAGGTACTTTGGAAGGCTATGATTCTGTTGAACAGGAAAATGGCATTTTGGTCGCACATGAGGATGATGATTTAACAATAAATATTGAGGGTATACGACATCCTTTACTCCTGGGGTCCTCACTAGAAAACATTTCAGAAAATTTTACACTAAGATCTAGAAATGCTGCAGAGTTGGACGATGGAAATGGAGCAATGGCTTCTAAATATATATCACAAAGCATATCAGACTTCCCTGTGCCAGTTGACTTCAAAATTAGACAAGGAACTAGAGTGGTGGTGATCTCAGGACCTAATACTGGAGGAAAAACTGCTTCCATGAAAACATTGGGCCTGGCATCACTTATGTCAAAAGCTGGAATGCATTTGCCTGCCAAGAACAGTCCAATACTTCCATGGTTTGACCTTATCCTTGCAGATATTGGAGATCATCAGTCCCTTGAACAAAATCTATCAACTTTTAGTGGGCATATCTCGCGTATTTGTAAGTTTATGGAAGTGGCCTCAAAACAATCACTTGTCCTGATTGATGAAATTGGTGGTGGAACTGATCCCTCAGAAGGTGTAGCTCTTTCTGCCAGTATTTTACAATATCTGAGAGATCGTGTAAACTTGGCTGTTGTTACCACTCATTATGCTGATCTAAGTACTATGAAGGAAAAGGATTCTCGTTTTGACAATGCAGCTATGGAATTTTCACTTGAAACCTTACAACCAACTTACAGGGTCCTCTGGGGATGTACTGGTGATTCAAATGCATTGAGCATAGCACAATCCATTGGCTTTGATAGAAATATAATTGATCATGCACAAAAATGGGTAGAGAAGTTAAAACCAGAACAGCAACAAGGGCGAAGAGGAATGCTCTATCAGTCATTACAGGAGGAAAGAAGCCGATTAAAGGCTGAAGCTGAAAAGGCTTCTTCCATTCATACTGAAATTATGAAAGTATACTTTGAGATCCTAAGGGAGGCAGAAGACCTCGATAGGCGAGAGATGGAGATTATGGCAAAGGAAACTCAACAGGTCCGACAAGAGCTGCAGGATGCTAAATCTCGTTTGGAAGCTGTCGTACAGAAATTTGAAAAGCAACTCAAAATTTCAAGTCGTGACCAACTCAATTCTCTAATTAAAGAATCTGAATCTGTGATTGCCTCCATTGTAAAAGCTCATAGTCCCGCTGATAGTCTTCCCATCAGTGAAGCTGGTCCTGTTTCGTCATATACTCCACAATTTGGAGAGCAAGTCCGCGTTAAGGGATTGGGAGGGAAATTAGCCACAGTGGTAGAATCGCCTGGGGATGATGAAACAATCATGGTACAGTATGGTAAAGTGAAAGTACGTGTGAAGAAAAATAACATCAGAGCTATTCCACCCAGTGCTAAGAATCCTGTAACGAGTTCTTCCGCAAATCAGGGGAGGAAGCGTCCACAGAGTAGAGAATACAGGGGAAATTCAGAGATCAGCAGCAATGATGATCTTTCTTATGGTCCAGTGGTGAAAACATCTAAGAATACGGTGGACCTACGAGGTATGCGACTGGAAGAAGCTTCTCTCCAACTTGAGATGGCAATTAATGCAAGTGGGCCATATTCAGTTCTCTTTGTAGTACATGGGATGGGCACTGGTGCTGTTAAGGAGCGTGCTCTTGCTATTCTACAGAAGCATCCACGTGTCACTAATTATGAACCTGAAAGTCCAATGAATTATGGTTGTACCGTTGCTTATGTCAAGTGA

Protein:

Promoter(3k):

>AM05G025780.1
TAGGTGCAATTTTGGTCCATCGTGTTTTTTAGAACATTTTAGTCGCTCTAATTTAAAAACTGAGCAAATATGGTCATACACTCATACCTTCAAATTGATATTTCAATAAGTGAGTATTTAGTGAAATAATGTTTAAAACAATTTAATCAATTCAGTTTGTTAAAATGTTTAATAGATTAGGATAATTTGAGGGTTTTAAATAAATAGAAAGGGATAAATGGACTTCACTATAGCAATTGAAAACAAGAAGACTAAAATCACTCGAAAAAAACTAGAGGGGCCAAAGTCGTACATATTCCAAATTATACCAAAAATTTAATTAAGCCTATAAATATCTAATAGAGAATTTTTGTGATGCATCCAGGATAGAGTATCAACTTCCAAATCTTATTGTTGGAGCTATTACAAAAGAAAGCTTGTATAACGCTTTTGAAAATGGCATCACGGCAGAACAGGTAAGTATTAGGAATTCTATTGTATATTGTCTGCTTTTAAATTATGGTACTCACTCTAGATAGACGGTATATTTCTTACTACACATGGTCCTTGTAGTCTCAAGTCTCAACATTGTTTTCACCATTTCAGTTTTGTAAAGTAAAAGCCTTTACTAAAGTAGTTCTGCCGAAGGAGTAAAGTAAGCTATTCATTTTCAGACCTGTTATGTAGTGACCAACTTCAATCCTTCCTTTGAATGACCTTCACCAAGAATGGATAGATGCGTTTTAGTTATTTGTTAATTACCATTGTATCCTTACATCCCCACAATATGGTTTTACTGTCTAAAGCTTTTAACATTCTTTAATATCTTTTACGTTATGTTCTCTTCCCTAAAAATCCTAGAAATTCTGTATGAACTTGCCTTAATCTAGTTAAACATTAAGGAAATGCTTTTTATGTGAGTTGATGTTTAAGAAGTTTACTTCAGACAATCGCTTATGGAGCAACTGTGCGCATTATGTTGCAGATAGTCAGTTTCCTTCGGCAGAATGCTCATCCTCGCGTTGCACAGAGGATACCAGCTGTGCCTGAAAATGTCACAGATCAGGTTTTGGAACTTTATATTTGTGAGTGTCTTGTTTATTTTCATTTTCTGACATGTAGCATTATGTTGTTGACAGATTAGGCTGTGGGAATCAGATCTAAACAGAGTTGAGATGACAGAAGCATACTATTATGACGAGTTCCCATCTAGGGTAATCAAATTAGAATATGCCATGTTATGGCTTAAAGATATCCCTTATTATTATGACATTTATGTCAAAAAATGTCTTAAGGATATCCCCTGTTATGTCAGTTTGATTCATTATGTCATTTTTGGGCAGGATGTATTTGAAGGTGCGTGTGACTGCGCTAGGGAATGGAATGGTTTGTTATGGGAAAATTCAAAGAAAATGCATATGGTCGTCAAGAGCGAGGTGCATACGTATGTACGAGATTATTTACGCCGCCAAAAGTAGCAGAAGGCCACACCAGATGATGCATCCCTGTCCGGACAATATGCAACGGGAACCAGGATTGAGGAAGCAATGTTATTACAAAATTGACAGCCACAATCATTCTTTTTTTTTCTCATGTTTTAGAAAATAATTTTTTTTTTTCTGAATTCTTCTGAGGGGTCATTTTCTGAAAGTATTTAGGATCTCCAAGAATTGATCAAAGGAGGCTCAAGATATGTAGATGAGAGCAAATAGGGTTTTGTGTCATCTGGCAAAGTATTTTAAAATAAATTAAAATATAGTACTAATTTTATTCTGGTGTTTCTAGAATGAGGGAGCAAATCAAATCTCTCATTGATGAACTATTAAATATGACCGTAAGATGTAGTATAAAAATTCATCAACGATTAAGATTTAATGCCGGTTGATTTACACAATATTCCTTTTGAGTTGACACATGCCCAATAGTAATTTGTAAGAGGACAAAAAAATTGAGAAGAGCGAGTATGTATTACAAGCATGTATTACAAAACTCTAACTTTGGGATAGTACCTTTATTAACAATGATCTTATGAAACACCTTTATAAAGCTTATGAGTATTCTATATGTGAATATTTCTTTATTGCTTCGTTATGGTTTTCTCGAAGAAAACTTCAATATGATAAATATAGTTTTTTATTCTTATTACCCATATGAAGTGCAGTAACTATGTTGCAAGTCAAGAACTCAAGTCTGGCCGTGACAAAACTGCTATTGCAAGTACCAAGACCATCTTTTCTTCCATTGGCGACAGGATTCCTCAGCTTATTGCTAGAAACTATTGCCAACGGATACTGAACTTAAACAACAGACATCAATAAGAGTGGTCCAACTATCTGGTAGCATGTTATTCCACATATTGTAAGATTTATGGAGTCACATTCCGATGGAATTACTAGTACGCCATCATAGAAATTGAATTTTGGCTTCTCTATTTTTCTGGGAGTCCCTAATAACATTTAGAAGAACTCCAGGAAGGGATTTTTCATTTTGAGGTGTGGAGCTCCTGATTTGAATTTTTTACCGAAATACACAAAACCGTCATACCGAAAAATATGAATTTGCACTTGGAGTGTGAATTTTGGCTTCTCTATTTTTCTGGGAGCTACTCGGAGTGTGAATTTTGGCTTCTCTATTTTGGCTTCCATTGGTGGAATTTTTATACAGCACATTTTCTAATTATACTAGAAAAAATTGGGTGCTTATAGGGTGAGGGAGCAAATCAAATCCCTCACCGATGAACCATTAAATATGACCGGAGGATGTAGTATAAAAATTCATCGACTGTTGAGATTTAATACTTGTTGATTCAATCTTAATCACCCATAGCATTTAACACAACATCCTACAGTTATATTTAATGGTTCACTGGTGAATGATTCGATTTGCTCACTCACCTTAGAATTATCCGAAAAAATTGTTCAAAAGAAATTATACTAAAAAATTTATCATCTACTATTCTTTTAACATAAGATTTGGTCATTTTTACTTATATTTTTTCGGTATTTGTTCTTTTTTTAACAT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00488.24	MutS_V	456	640	1.30E-32
PF20297.1	MSSS	776	817	2.10E-09
PF01713.24	Smr	870	940	3.40E-07

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0005524	ATP binding	Molecular Function
GO:0000256	allantoin catabolic process	Biological Process
GO:0004038	allantoinase activity	Molecular Function
GO:0050897	cobalt ion binding	Molecular Function
GO:0008270	zinc ion binding	Molecular Function

InterPro

InterPro term	Description
IPR036063	Smr domain superfamily
IPR002625	Smr domain
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR046893	MutS2 and Smr-associated SH3 domain
IPR005747	Endonuclease MutS2
IPR000432	DNA mismatch repair protein MutS, C-terminal
IPR036187	DNA mismatch repair protein MutS, core domain superfamily
IPR007696	DNA mismatch repair protein MutS, core
IPR045076	DNA mismatch repair MutS family

trEMBL

trEMBL term	Description
G7ZZ93	_

SwissProt

SwissProt term	Description
MUTS2_SYNY3	Endonuclease MutS2

KEGG

KO	Description	Enzyme
K07456	DNA mismatch repair protein MutS2

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G65070	DNA mismatch repair protein MutS, type 2
Medicago sativa L.	MsG0480022401.01.T01	_
Oryza sativa L.	LOC_Os04g58410.1	smr domain containing protein, expressed
Cucumis sativus L.	Csa016321	_
Glycyrrhiza uralensis Fisch.	Glyur000117s00007665.1	_
Codonopsis lanceolata	Cl_chr03_02630T	_
Arachis hypogaea L.	AH03G36780.2	Endonuclease MutS2 like

Expression pattern