Gene detail

Detail information of Am05G023830.1 Annotation

Gene ID	Annotation
Am05G023830.1	ARM repeat superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G023830.1	mRNA	Chr05	137159886	137163235	-

Sequences

CDS:

>Am05G023830.1
ATGGCCGGCGAGTTCGCCGGAGACCACACACCGGAGCTCCTGTGTCTAGTTCATGATATCGCCGGAATGTGCACCGGAACTGGAGGCGGTTCTTCCTCCGACATCGCGGATGCAATGTTCAGGAAAGACTGCACCGATCTGGTTCGCCGGATCTCCCTATTAACACACTTGTTCGAAGAGATAAGGGAACTAAACAAAGTTGTCGATTCTGCTTCAAGTTCTTCTGCTACTGTTTCTGCTTCAGCGGATTCGTGGTCCTCTGATCTGGTGCTAGCTCTTCAATCTGCTAAACGCTTATTATCCGTTGCGAAGAACTTCCGTTCCAATTGCTCTTCTGATGGAGCTGCCAAGACAATTATCTTCCAATTTCAGTGTGTGACGTGGAAATTGGAAAAGCTATTGAGCAGCTTACCATACGACAATTTAGACATTTCAGAGGAAGTCAAAGAACAGGTGGATTTGGTGAGAACACAGTTGAGACGAGCCACAGAAAAATATGGGTATATGATTTCGAAAATGCCATCTTATGAATTATCCCAGCCTCTGGCTCAAGAAATCGGCCAGGTTCCTGGAAAATCTGTAAGTGGATTGCAAAAACGTAGCAGCTGTCCTGAATATCTATCAGAACTAGGAAACATTGCTAATAGCGATGAAGGGATACATTGCAGCACGAATGGGGCGGGATCTCGCTTGGAAAGAACAAGAAGCATCCCTGAGGTTTCCTTATCGAATATAACTGCGCCTGAAAGTGAGAAAATTTCTGGGAGAAGGAATCTACCTGATGTTAAAAAGCCTGAAACAATTGTAATTCCTGAAGATTTTCTTTGCCCTATATCTTTGGAACTAATGAGGGATCCTGTTATTGTGGCCACTGGTCAGACATATGAGAGATCTTACATACAGAGATGGGTAGATTGCGGAAATACAACATGTCCAAAAACTCAGCAAAAGCTCCAACATTTGACCCTTACGCCAAATTATGTTTTAAGGAGCCTTATATCTCAGTGGTGTATAGAGCACAACATTGAGCAACCAACGGGATTAACCAATGGCAAAATAAAAAAGAGTGATGGATCGTTCAGAGATGTTACGGGTGACATAGCAGCAATCGAAGCTCTGGTCCGGAAGCTCTCCAGCCGGTCCACTGAAGAGTGTAGAGCAGCTGTTGCTGAGATTCGATCACTATCGAAAAGAAGCACTGACAATAGGATACTGATTGCTGAAGCTGGAGCAATTCCGCTTCTAGTCAACCTTTTAACATCAGAAGATGTATTGACGCAAGAAAATGCAGTTACTGCAATTCTCAACCTTTCTATATATGAAAACAACAAGGGACTAATAATGCTTGCTGGTGCTATACCATCCATTGTCCAAGTCCTCCGAGCTGGAACTATGGAAGCAAGAGAAAACGCAGCAGCAACCCTTTTTAGCTTGTCACTTGCGGATGAGAACAAAATAATAATTGGAGCCTCAGGAGCAATATCTGCATTGGTTGAATTGCTCCAAAGTGGAAGCCCTAGAGGGAAGAAGGATGCAGCAACAGCACTGTTCAATCTATGTATATATCAAGGGAACAAGGGCAGAGCCATTAGGGCAGGGATCATCACAGCACTGTTGAAGATGCTCACAGATTCAAGCAAATCAATGGTTGACGAAGCCCTAACGATAATGTCAGTTCTTGCGGGCCACCAAGAGGCAAAGGTTGCCATAGTAAAAGCCAGCACTATACCCGTTTTAATAGATCTTTTGAGGACAGGATTGCCTCGGAACAAAGAGAATGCAGCTGCCATTTTACTTGCCTTGTGCAAGAGGGATACGGACAATCTTTCCTGTATCAGTAGACTTGGTGCTGTCATACCACTTTCTGAACTTGCTCGAACTGGTACAGAGAGGGCTAAACGAAAGGCCACTTCATTACTGGAGCATCTTCGCAAGTTGCAGCAGCTTTGA

Protein:

Promoter(3k):

>AM05G023830.1
GTCATCTTCCGCAACCTGTAGATCTGAAATGCATATAGTTAGATATGGCATGTATATAACCCAGTGTGATAAAAGTGTTAAATTTATAGTAGTTGTTTGGGTAATACCTGGTATATTGAGGCGCCTTCTTCTATCATAAACTATTCCATCAGCTAGCAATTTCCAAGTAGACTCCCATACAACATCTGGTTTATCATTGTGTCCATAGACACCAGTCCCCATCCCCCGCTATGAGGTTGACAGTCGCATACACGACAAAAGTACCTTGCTGATTTTGGATGTAAATATAGGCATAGATCGTGAAACAAAGCTGGAACAGAAATCATAAGTTAGGATAGGGACAATATATTGAGATTACCTGCTTAGAACTTTTCAACTGGTTAAGGTTAGCAGGTTGAGATTACATGATTCCGACATGCTACAATATTTTTTGTATATATTAAAAAGAAGAATCAAATCACTCACAAAGATATATAAAGAAAAGATATATCAGCTCATGCACAGCAATATAACTACTTGTTTCGTAAATTAGTAGCTTCAGGGACATCAGGATTCAGCTGCAGCCTACTTGAATGCATGGTACTTATTAGTCCGGGTTTCCCTATAAGTTTGGCAACAAAACATTTAGTATATAGGTAGGCAGGTATGACAATCAAATGAACAACATACTTTTACATACAAAACAGCATGTAAGAATTCTCCTCATTAAATGCTGTAAATTATGACCTTGAAAGACTTTCAACTTTGCTAAAGTGATCGCTAGGACAGTGTTGTGTGGATCCCCAACAATAAGAAAGGCTTGCAGCTCATCAACCAAAGTTCCAAACAATGTCACACTATATCTATACCTGGTGGTGAACATGGTAGTCAAGAGCTTCCAAACAATGTATAAGAAATAGAATTATAGAAAATTCTGAAAAATTTAATTACTCATGATAGTCAATATCCACAACTGTCATAAAACACTTTTCACCAATCCTCATAAAGGAGCGCTGCTGGCCAACACCAATCAATGAACCAATGACATCTGAGTTGTATAGAAAAAATTTTGTTTAGACTATTCTTTGGGCTGTAAATAAAAGACACATAGTAAAATAAAGTTTTGATGGTTTGAATTACTTACCCACTAAGTAGTTGCTGTCAAATGTAGGGCTAAAAATTTCAGCAGGTGGTGTAAACACATAAACATATGGAGGGACCAGGTTTACATCAGCCCTCTTGATCACAAATCCTCTCTTGAATTTATGTTTAAAAGCATGATTTGTTGAGCGATATTCCCCATCATTTGCTTCGGGGGTAAAATTAGACATGTATACCACACCCTCGGAAAGTTCTTTCTCATACTTGTAGAAAAGTTGTCTTTTGAGGGTAAGAGTGAGCTTAGTCCCCTGAAAATATCATATTACAACATAATAAGTGTAATTCGTTTTTTTGCCACAATCCAGATATTGCACGGGCCAAATATAAGTATGACATTATCAAGAAATAAGTTTCTAATCTATGACAGATTTGTTTGTTAATATAGAAGTTTTCTATATAGCGGATTATTTGTATGAATGTAACAACAATATAAGCACTAATATGAATGAAATATAAAAATGTGTTGTTATATTTTATCACTGACTTGCTGATTCGCATTAGTCAAACTTTGCAACCACTATTATGAATGCAACAACAAAAGGGCCGGATTGTTTTATTTTATCAGAGATCTGGTGGTTGGCATTACTCATACTATAAAAGCACTAATATGAATGAAACAAAAAAAAGTGTTGTAATATTTATCACAGATTTGATGATTCGCATTACTCATACTTTGCAGGTTGTATAGACATTGGAAAAAAGGATAGTGTATACCTGTGCATCGGTGATGACCATGTCAAGGGCAAATGTGATCTTATTGGTTTCAGCATCCTTGACTGGCCAGAGTCGTACTATGCGGACCAGCAATTTCCAGTTCTCTCTTGAGCTATTGACATCAGACAGCATATCAAAGGTAGTGGCATTAGAGGAACTCATGATTTTTTGATACTGTCTTATCGCTATAGGGTTTAATTAGCAATGGGATGCTGTATATCTTTCTGTGGTACTGGATCTGATAGGTACAAAATTTATATATAAAGGTAGGGTAATGCTGATTACAAATATTGTGTGTTGTGGAAGGAATTTCTATATCTGTTGTTGTGTAGTGTAAGATTAGGAAAATGCTAAATCAGTGCACCTGAAATCGTGCGCAGGGAATATGGGATTTGGTGTGAAATGGTTTTGGAATTTGGTGTGAATTGGTGATGAAATTGGGGAAATCATTGTGGTGTTTAATTTGGCGAAAATGAAGGCTCAGAAAATTAGAGTGATGAGGCCGAATTTTAAGGATCAACTTGAAGACCATACAGATTTACAATTTTCAAATTAGTGATCCAGCAGCTACTTTGGTGTCGGTCCAAAAAATTCAAAATGAAATTGACTCTTTTTTTGGATTTGAATTTTGAACCTGAAATTGTGCGCAGGGAATATGGGACAGATTTTAATTCTGGTGGAAACGTTAATTTAATTCAGGCATAAAATCTGATTTGTTGCATAATTGCCATAACAACGGTTGCTGTATTATATTGTTGTTTTCTGGTTACAGCTATTTAATTGGTGTCTTCTTGTTAAATGCGATAACGTGACTGGTGTGGTATATATGTTGAGTGACTTGGCATGTGGAATGATTAGGTGGACCAATTATGTGAAAACATTTGGAGATTTCATTTTTGAAAACATTCTCAAATGTATATTTAATAGATAGATATAAATATAAATATAGATATAGATTATTTATATTTAATTAGCTGATAATATAATCCGGAAAACCACAAGAACGTGAAGCCAAGAAACTCATTAGAATATATTATTATTACAGAGACTTAGCACTGTTGATACGTGTCGACGCTTGATAAGTCTCACCACATACCTTTATTAGACTCTCTCTGACTTCCCTCCCAACACGACACAGGAAACAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00514.26	Arm	400	438	5.50E-33
PF00514.26	Arm	482	520	5.50E-33
PF04564.18	U-box	270	341	5.20E-21

Gene family

Gene family	Subfamily
Ubiquitin Family	U-box

Gene Ontology

GO term	Description	Category
GO:0016567	protein ubiquitination	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0005737	cytoplasm	Cellular Component
GO:0016874	ligase activity	Molecular Function
GO:0007166	cell surface receptor signaling pathway	Biological Process

InterPro

InterPro term	Description
IPR013083	Zinc finger, RING/FYVE/PHD-type
IPR003613	U-box domain
IPR045210	PUB protein, U-box domain, plant
IPR016024	Armadillo-type fold
IPR011989	Armadillo-like helical
IPR000225	Armadillo

trEMBL

trEMBL term	Description
A0A9D4VN68	_

SwissProt

SwissProt term	Description
PUB11_ARATH	U-box domain-containing protein 11

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G23030	ARM repeat superfamily protein
Medicago sativa L.	MsG0480020949.01.T01	_
Oryza sativa L.	LOC_Os02g49950.1	spotted leaf 11, putative, expressed
Cucumis sativus L.	Csa008245	_
Glycyrrhiza uralensis Fisch.	Glyur001016s00027695.1	_
Codonopsis lanceolata	Cl_chr01_16310T	_
Arachis hypogaea L.	AH14G21280.1	U-box domain-containing protein 11 like

Expression pattern