Gene detail

Detail information of Am05G023640.1 Annotation

Gene ID	Annotation
Am05G023640.1	Mitochondrial transcription termination factor family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G023640.1	mRNA	Chr05	136551607	136553307	-

Sequences

CDS:

>Am05G023640.1
ATGGAAGTCACTAGCAGCCATAACAGCAGCAACATGATGTGGTTTTTCAAAGATAGAGGGTTTGATGATAACAGCATAAGTGGAATGTTCAAAAAGTGCAAGCGCCTAGAGATGGTACAACAAGAGAGAGCAAATGAGAATTGGGAGTATTTGAAAAACATTGGCATTCAAGAAAGGAAAATTCCCTCAATTGTTTCAAAATGCCCCAAGATTCTTGTGTTGGGTCTTAATGAGAAGATTGTCCCCATGGTTGAGTGTCTCAAGACATTAGGAACAAAACCACAAGAAGTTGCCTCTACCATTGCCAAGTTCCCTCACATACTTTCATATAGTGTAGAAGAGAAGCTTTGTCCCCTTTTGGCTTTCTTTCAAGCACTAGGCGTCCCCGAAAAGCAAATTGGCAAAATTTTGCTGCTAAACCCCAGGCTTATTAGTTACAGCATTGAAACAAAGATGGGTGAAATTGTGAACTTCCTTGCCAGCATTGGTCTTAATAAAGATGGAATGATTGGAAAAGTTATAGCCAAGGACCCTTTTATTATGGGTTATAGTGTTGATAAAAGGCTCCGCCCTACTTCGCAGTTTCTGAAATCAATAGGTCTTGCTGAGAAGGATCTTCAAATGGTGGCTATGAACTTCCCATCAATTTTGAGCAGAGATGTGAACAAGGTTTTGGTACCTAATTATGATTATTTAAAGAAAAGTGGATTTCAAGACAGACAGATTGTTGATTTGGTGGTTGGTTTTCCTCCTGTACTGATCAAGAGCATCCGAAATTCTTTAGAACCGAGGATCAAGTATTTAGTGGATGTGATGGGGAGACAAGTTGATGAAATCATAGATTGTCCCGGCTTCTTCCGTCACGGCCTGAAGAAAAGATTAGAGTCGCGGCACAAATTCCTAAAGCAGAGGAATTTAGATTGTAGCTTGAGTGAAATGCTGGACTGTACTACGAAAAAGTTCCACATGAAGTTTGGTTTGCTAGAAGAATATGCCTTGAGTAACTAA

Protein:

Promoter(3k):

>AM05G023640.1
GAGTGGCTTTGCAGGTACCCCCCCGGGCGCTCACTGACCTACAACCAGGACAACAAGGGACCTACCAACAGCAGCCTACCAAATTACTGCTAGGTACAGAACAGTTGGTATTCCATGTAGGCATGCATGTGCTGCCATATCATATAAAGATCTAGAACCTGAAGATTTTGTAGATGCTTGTTATACTAGATATAGTTATGAACTTGCATATAGGGAAAGTGTAAGTGCCATTAATGGCCAAGATATGTGGCCTACTGTTGAAGTGGAAGATATGCTACCACCACAATACAAAAGAGGCCCTGGTAGGCCAAAGAAATTGAGGAGGAGGCAACCTGCAGAGGAGGAACCTAATGCTAAGAAGCTAAAGAGGACAGGGACATCATACAAATGCACAGAGCACTGTGACCAATTTGGTCACAAGAGCACAGATATCAATCCAGAAGCGCAAAAAAGGAAGGTAATAATAGCAGTATGTCTTTGATATCTGTCTGATCTATAGTTATGTCTTTGATATCAATTATATTGTTTGTTTTCATGTTGTAGAGAAAACCAAGAAAGGCTGCCTATGTTCAACAATCTGCTGCACCAGTTCTAGAAGGAGTATCTGTCAATGTTCAACAATCTGGTGCACCAGTTCAAGGAGTATCTGTCAATGTTCAACAATCTGCTGCACCAGTTCAAGAAGTTCAACAATCTGTCAATGTTCAAGAAGGAGTATTTGTCAATGCTTCTGCTGCTGGAAGTGACCCGGGTCTCAAGAGGACTAAACTTCCAGTTAAAAGAAGGATTAACCTAGGTCTCAAGAGGACTAGATTGAGTACAAGGTTAAAGAAAACTGTACTACCTTATACTGGTCCTGGAAGTGACCCAAACAAACCACTACTGGTTGAAGATATTGAAGATGGGTGTTTAACACAAGAGAATGTGAATTGAAGAATGAAATCATGTATTTTTGAACTAATGTATTTTGGAACTAATGTATTTAGGAACTAATGTATTTAGGAACTCATGTATTTAGGAACTCATGTACTGGTTGAATGAAGTCATGACCCAATCAGTTCAGCTTATTTTGGATCTATTTATGTATTATCAGTTTATATATTATCAGTTCTAGTTTATGTATTATCAGTTCCAGTTTATATATTATCAGTTCCAGTTTATATATGATCAGTTCCTGTTTATATATTATCAGTTCCAGTTCAGCTTGAGAAAATGTATTCTGCATCAGTTACAGTTCAGCTTGGAACTAATTATATATTTATCAGGTTATCAGTCATGTATTCTGCATCAGTTAATAAACAAACACAATGAAACAAAGTTAAATTGACTTAATTGATAAACAAAGTTAAACTTCATTGATACAAACACAATGAATGGTCACTAACATTGCACCTAATCCAACCCATTCATATTGCCTTTGATTACAATAACACAAACACTAACACAAATACTAAAATTACAATATTGATACCCTAAACCCTATTTTTTTACCAAAACAAATTTCTCAAATGCTACAAACACAATGACTAAAATTAGTATTGCTTGCATCCACTTCTTCTTCTTCCTCTCATCTAACAACTTCAGCTTCAGCCTTGAAACTTTGTTTGACTCCCAATCCTTGAAAATGTCACCACATTTGCATTGAGAAATTGTGTTTGTTGTTGATTCCAACTGCTTGTGTTCATCTGTTTCTGAAACTGTCACCATCTTCACTCTACGAAGATCTAGTTCATCATCCCAAATAAATAACTTGCAGTTTATTCGCTTCTACACAGATTAACAAATACAGAGATCTCAGATTCGCAAAAAAATCAACTGAAGACAAGAATTGAAATCAACCATATTACTTACCCCCCAATTAATACACTTCCAAAATCTTCTTCCAGGATTTTCAGAAGTGTTTGAAATCCATAAACGCATTGGCTCGCGACATCCACAAACAAGGAGTTGGCCTTGCCCTTGCCTTGATACAGCATTCGAAGATGTGTTGCTTGTGGCCATTGGTGTGAACTAACGAAGATGGAAGAAGAGAGAACAAGATGGACGACGAAGACTGGTTCTGCTTTGTGAGAGAGAAGAAGAAACAGAGTGATTAATGAACCCTAGAAGGGAAGATGATGAAGTGACAAAGTGAGGGGGGTAACGCACACGTGTATAAGTGAAAACAGATCAGCAATCAATTAGGCATCCACGTCAGCAAAATTAACGCTGTTAGCAAAAAAACTAACAGAGGGGTGTAACTGGATCAAATTACATTTTGCAAAGTTTATTTTAAATATTTTTTTTGCGGGGAGGTAACTGGATAATGAAAATATTTGCAGGGGGTAATAACTATTTAAGCCTCGAATAAATAGATAATTGCAATTTGCAATCAAATAGAAAAAGAAAAGCGAGTAAACGACGTCGTGTTGGTGGGCAGGAGTAGGAGTCTATCTTCTTCCCAATCCATGTTGTCTTCTCGTCCCTCTCACTCTCAGTGGAATCCTCTTTCTCTGGCTTTGGCCCTTTCAATTTTTATTCAACGATTCCAGTGCCCACACCCTGCTCCGCTCCCACGCATGCAGCAGAGCAACAACCCTTGACCTTGTGGTAATTATAATTATGATAATACCCATCTCTTCATTTACTCATTTCTCTTCCGGTCCCTTTTTTGTTTTCATTTTTCGAAATTCAAATTTTATTATCTGGAAACTGTGTGTGATAGAATCTGTAAAAAAATGAAAAATTGAAAATACAGTCAAACTTGAATGTGTATCGATTGAAAACAATATGTCATTATATTTTAAAAATTCTGCATTTAATTTATTATTTTTTTTGAGCTCCTTTCAAAATTGTGTGTGAAACTGTGAATCATAATCATGTAGAATTGTGTTAAACTTAATTTGTTCTTTAACTGCAAATTTACTGAGCTACATTCCCTGCTAGTTCATTCTGTTCTCATGATGATGTTTTAATGTCTAAAGTAAGTGTTTTATTTTGATGGATAATTTTTAGAGTAAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF02536.17	mTERF	12	123	2.70E-60
PF02536.17	mTERF	112	321	2.70E-60

Gene family

Gene family	Subfamily
Transcription Factors Family	mTERF

Gene Ontology

GO term	Description	Category
GO:0005737	cytoplasm	Cellular Component
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0003727	single-stranded RNA binding	Molecular Function
GO:0042651	thylakoid membrane	Cellular Component
GO:0009658	chloroplast organization	Biological Process

InterPro

InterPro term	Description
IPR003690	Transcription termination factor, mitochondrial/chloroplastic
IPR038538	MTERF superfamily, mitochondrial/chloroplastic

trEMBL

trEMBL term	Description
A0A1S2YIH7	_

SwissProt

SwissProt term	Description
MTEF6_ARATH	Transcription termination factor MTERF6, chloroplastic/mitochondrial

KEGG

KO	Description	Enzyme
K15031	mitochondrial transcription termination factor family protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G38160	Mitochondrial transcription termination factor family protein
Medicago sativa L.	MsG0480022149.01.T01	_
Oryza sativa L.	LOC_Os08g40430.1	mTERF domain containing protein, expressed
Cucumis sativus L.	Csa013667	_
Glycyrrhiza uralensis Fisch.	Glyur000032s00003934.1	_
Codonopsis lanceolata	Cl_chr02_49830T	_
Arachis hypogaea L.	AH10G09790.1	Uncharacterized protein like

Expression pattern