Gene detail

Detail information of Am05G021210.1 Annotation

Gene ID	Annotation
Am05G021210.1	switch 2

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G021210.1	mRNA	Chr05	129588401	129599566	+

Sequences

CDS:

>Am05G021210.1
ATGTCGCTGCAGGCTCTGAAGGAAATTTTGAGACCTTGCACAACCAAACAATCACAACCACCTTCTTCCTCATCTCAATCCATTACCCAAACTCACTCCAATTCTCTTCTCCTCGATTATAATTCCCAATTCCCCATCCATAGAAAACCCCCAAAAACCTCTCTTTCACAACAGCTTCGCCGTCTTCAGGACTCCCCGCCTGAGCCCTACAATTTCCTTCACTCACAAAAAGACTCCAAAACCCAACGACAACAAGAACAAAACGACGACCACGACGACGACAAAGAAGAAGAAGAAGTAGAGCCAGAGATAAAGAGAGCGAAAATCTTAACGGCCAAGTCTTCTCCATTTCAATTCGAACATACTGGACCTTTTGAACCCTTGGTCTTGTCTCCACATGGAGAAGTTCCCGTAGTTCAGGTTCCTGCATCTATAAACTGTAGACTGCTTGAGCACCAGAGAGTGGGAGTGAAGTTTTTGTACGGCTTGTACAAGAACAATCATGGAGGTATTCTCGGAGATGACATGGGTCTTGGAAAGACTATTCAAACAATAGCATTTCTTGCTGCCATCTATGGTAAAGATGGAGAGTCTAATCCAAGTGAGAAGCGAGAAGAGAAAAGAGACCCTGTATTGATAATTTGTCCAACATCCGTTATTCACAACTGGGAGAATGAATTCTCTAAGTGGGCTAACTTTAGTGTTTCCGTTTATCAAGGTGCAAACCGAGATTTGATATACGATAAGTTGGCAGCAAATGGAGTGGAGATACTTATTACCAGTTTTGACACTTACAGGATTCATGGCAGCAGTTCTTTGTCAGATATCCACTGGAACATTGTGGTTATCGATGAGGCTCACCGACTCAAGAATGAGAAATCAAAACTCTATAAAGCATGTTTAGAAATTAAAACCTTGAGACGCTATGGTCTTACTGGGACTGTAATGCAAAATAAGATCATGGAACTGTTCAATATCTTTGACTTGGTTGCACCTGGATCCCTTGGAACACGGGAACACTTCCGTGAGTTCTATGACGAACCCCTTAAGCATGGTCAAAGGTCAACTGCTCCCGATAGGTTTGTCCAAATTGCTAATAAGAGAAAACAACACCTTGTTGCGGTTCTTGATAAATATATGTTGAGAAGGACGAAGGAAGAGACCATAGGGCATCTTATGATGGGGAAGGAAGATAACATTGTGTTCTGCGCAATGAGTGATGTGCAAAAACGTGTTTACAGGAGAATGATACAGCTTCCTGACATTCAATGCCTTATAAACAAGGACCTGCCTTGTAGTTGTGGTAGCCCTCTCACTCAAGCTGAATGTTGTAAAAGGATGGTACCAGATGGAGTTATTTGGCCTTACCTTCACAGAGAGAACCCTGATGGTTGTGATTCATGCCCCTTTTGCCTTGTCCTTCCATGCCTTGTCAAGCTCCAACAGATAAGCAATCACCTTGAGCTGATTAAGCCAAACCCCAAAGATGACCCTGACAAACAAATTAAAGATGCAGAGTTTGCTGCTGCTGTCTTTGGCCCGGATATTGACTCAGTGGGTGGGAACGTGCAGAATGAGAGTTTCATGGGTCTAAGTGATGCGAAACATTGTGGCAAAATGCGAGCACTTGAAAAACTATTGTTCTCATGGATTTCACATGGTGACAAAGTTCTTTTGTTTAGCTATTCTGTAAGGATGCTGGACATACTGGAGAAATTTCTCATACGAAAAGGCTACTGCTTCTCAAGACTTGATGGGTCCACTCCAACTAATTTACGTCAGTCTCTGGTTGATGATTTCAATTCAAGTCCAAGCAAACTAGTGTTCCTGATATCAACTCGCGCTGGTGGGCTTGGATTGAACCTTGTCAGTGCGAACCGTGTTGTGATATTTGATCCTAACTGGAATCCTGCACAAGACTTACAGGCTCAGGACAGGTCCTTTCGTTTTGGACAGAAGCGGCATGTGGTGGTATTCCGTCTTCTCGCAGCTGGCTCACTTGAAGAACTAGTTTATTCTCGTCAGGTGTACAAGCAGCAGCTCTCAAACATTGCTGTCTCTGGAAAGATGGAAAAACGATATTTTGAGGGTGTCCAGGACTGCAAGGAATTTCAAGGGGAGCTTTTTGGAATTTGCAATTTATTTCGAGATTTATCTGATAAACTATTCACCAGTGAGATCATTGAATTGCACGAGAAGAGTAAAGAAAAAGGGCTCAAGACAGAACAACAGAGGAAAATAAATCTGCCAGAAGAAACAGGTTTATTAGCATCAGAGTCTGAAACCAGGTTATGTTCTGAAACTGTGAGGGCTGCAACAAGTAAACCGGATCTTGAATTTGAAGACCTTGGAATCGTCTATGCTCATCGCAATGAAGACATCGTCAACTTCGGACCAGGGATTCAAGGGAAAATATCTACCCGTAGCCCTTCTAAGGATATCCTTAGCAAGCCAAGCATCTCTTCAGACCATCAAAGTAAAAAACCAGTTTGTGTACCTAAAAAGCAGAAACTTCCTTTGGTTGATGAAAGAAAGAGAACTCAATTTAGCCTCATTGCCCAATCTATGGGCATGGACGAGCTTGCATTTAGCAAATGGTTACTATCAGCTACTCCACTGGAGAGAGAAAATGTGCTTCTAGACTACAAGAAGAAAAAGAAATTCAAGCCTTCCACTGGTTGA

Protein:

Promoter(3k):

>AM05G021210.1
GCAGGGAAAATAAAAGAGCGAAAAAGTAAAGAGCGAAAAGTAAAGAGCGAGAAAGTAAAGAGCGAGAATTTAAATAGCAATGAAAGTAAATGACTTGGAAAATAAAAGGGCAAGAAAGTAAATAGCAGGGAAATAAAAGAGCGAAAAAGTAAAGAGCGAAAAGTAAAGAGCGAGAAAGTAAAGAGCGAGAAATTAAAGGGGCAATAAAGTAAATAAGCAAGAATCATAAAAACATGAAGAGTAAATTGAAGTCATGAATCTTTAGAGAGCCTTTGTCATTGATTTTCTAACAAAATTCAAGCTTGGTTACAAGTGAGGATCAAGCCTCTATTTATAGGAAAATATTAGGTCTAAGGCACTTGAGAGGAGGGGCAAAATGGTCATAAAAAAAGTGGCAAATCAAGTGGCAAGGGAAAGCCATCAGCAAGTGGGTGCAGCCAAAATTGACTTGTCTGGTGCCAGGGTCGTGCGCCCATGTGCCTGGGTCGTGCGCCCTGGCCAGTCAATTTTGGCTGCTCTGCGCCAGTTTTGCACTAGGGTCGTGCGCCTATGGTGCCAGGGTCGTGCGCCATGTGCTGGAAACAGCTGTTCTGCGTTGCTGGTAAGCATGGGTCGTGTGCCTATGTGCCAGGGTCGTGCGCCTTGTTCTGTCAAAATGGGCCATTTTCAGTTGAAAACACGCACGGGTCGTGCGTGGTGCACTCAGGGTCGTGCGCAGGCTCTGCGCCAGTTTTTACCAGGGTCGTGCGCCTATCTGCCAGGGTCGTGCGCCAGTTTTGCACTAGGGTCGTGCAACATGTGCCAGGGTCGTGCGCAGGCTCTGCGCCAGTTTTTGCTGCTTGGCGCCCTTGGCGCCCTGTGCTGCGCCAGTTTTGCTGCTTGGCGCCCTTGGCCAGTTTTCGGTTTTTGGGGCCCTTGGCGCCCATGAGGGTGTCTAGTGCTTTAAAAATTGCTCCTCCTCAAATATTTTCTTTTTTCTTCATTTTAGCTCATATTTTCTCTTTTGCTCCAAAATAAAACCTGAAAATAAAAAGCAAACATATGTAGTAAAATAGTTCAAAGATATAAAATATAATTAAAATACCTAAAAAAACTTAATGAAAATAACTATTAAAAAGACTCTAAAAATAGACTTATCACATGACCACAAACAAACCCTTTATATGCAACATTTTTTTTTGACAACCAATTTATGTGTAACAATGATAATAATGAAAACTGTTTTTGATGTGTTGAGAAATTAAAATTGGACTCACAAATAGTGTCATTCACTTAACAAAAAAAGTGTGTAACACATAAAAAGTCTATTTAAAGACAAAGTACAAGAAAAATTATTGATCAAAAAATTAACAATTAAAATTATTACCCACACAAACACGCATGATAAATCACAAAGTTATCAACTATTGTTTTTTCATTATACAAACAATGAAAAAAAATGATCTGTTGGTGAAAGATTGCGTCAAAAAAAAGTAGAAGAAAACTCTAGTCGAGTTGCTTCTTCTTTGAGGCTGATGACAACACGTAGAAGAAAACTCTAGTCGAGTTGCTTCTTTCTTTGAGGTTGATGACAACACCTGGGCGTTAGATAACCTGGACACATCGACCTCGTCTCTCCAGAACCATCCCTGGCAAACTACTATCATGGTGGTAGCTTGGCTCTTGTGGCAGTGGCGCAATAAGAGTATTTTTTAGGAAGGGTTTCAGCGTCCAAATAGCGAGGTTACAGTGATTCTCAAGTATGTGGAGGAAATCCAAACCCATGTTTCAATGCATCAAGTAAACTACTGAGACACCACGACTCTTGTAAGGTGGACTCCTCCAGAAGAAGGGTGGTGGAAACTCAATTTCGATGGAGCTTGTAGAGGCGTAGATAATCAAGCTGGCTGTGGGGGACTCTTAAGAAATTCTACCGGAAGTTGGTTATGTGGCTATACTAGAAGGCTTGGCACGTGCAACGCTTTGCAGGCAGATATGTGGGGGATGTGGATTGGTATCAACATATCGAAACAAAGAGGAATGCGCATGGTGGTATTGGAGAGCGACTCCAAAACATTGTCTGATTTGTTGACAAGCAATGGGAATAATGCTAACACCCAATTCACACTTGTCAATCGCATTAAGAAGCTAGTTGCTGAAGATTGGGAGGTGCGGTTCATCCATACTTGGCGAGTGGGTAACATGTGTGCCGACTAGCTAGCTAGTTACAGCTTACAAAATGCCAGCATGGATACCATTTTTTTAGATGACCCCTTGAGAGGCTTTCCATCAAGATTGCTAATGATGTAACCGGGGCGCCTGTCAGAGCATTAGAGCTTGTTAGTTTTTTTTTTTCGGGCTTTGCCCTTTGTTCTGTACCTTGCTTCCGGGACCGGGGTCCAAGGTTGTAGTTGGTAGAGGTTGGTTGAAGTCTTCTCCTTCCGAGCTCAAGACCGAACTGGTGGTGGGTACCTGCAAGCACTCCGATGCCAAAGTCAGTAATCAGAAGTGGAGAGGAGGTACTTATGAGAGAGCGTACCTGATTTCAGAGGATGGTGCTGTATTTATAAACGCAGGAAGGGGTTGCCTTTAACCTTAGTCGAATCTGGGCTGTCCGTGTCGATCTTGGTCGTTGATCTCAGCGTCACCTGTCAATGACTGATGTTGGGCCGGATCCAGCGTTGGATTGGGCCGCTCTTTGTACGGATCGGGCGACTTGACCCGGCCGGAACACCCTATTCATTTACCCAAAAAAAAAGAAAGTAGAAGAACACTAGGCTCTGTTTGGATCTTAGGACCCAATGCAGATTTCACCCTGGTACCGAATCCCGCATCTGCACCGTGATTTTACCCACCCTACTACCACCAAATGTGAGGAAAAATGTCTAACACACCCTAAAATTAAACGGAAAACAAGGGGCATCAATTTTGAAAATTCTGCGCAGCATTCAGGAAACAAGCAAAAACAAAGCTCTCTCTCTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTGTGATTCTCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00176.26	SNF2-rel_dom	166	422	2.10E-58
PF00271.34	Helicase_C	539	651	8.60E-20
PF04851.18	ResIII	165	315	1.10E-07
PF00270.32	DEAD	176	299	2.30E-06

Gene family

Gene family	Subfamily
Transcription Factors Family	Others
Transcription Factors Family	SNF2

Gene Ontology

GO term	Description	Category
GO:0005524	ATP binding	Molecular Function
GO:0016787	hydrolase activity	Molecular Function
GO:0004144	diacylglycerol O-acyltransferase activity	Molecular Function
GO:0003677	DNA binding	Molecular Function
GO:0046872	metal ion binding	Molecular Function

InterPro

InterPro term	Description
IPR038718	SNF2-like, N-terminal domain superfamily
IPR000330	SNF2, N-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR001650	Helicase, C-terminal
IPR014001	Helicase superfamily 1/2, ATP-binding domain

trEMBL

trEMBL term	Description
A0A1S2YJ48	_

SwissProt

SwissProt term	Description
CHR9_ARATH	Switch 2

KEGG

KO	Description	Enzyme
K20098	DNA excision repair protein ERCC-6-like 2	[EC: 5.6.2.-]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G03750	switch 2
Medicago sativa L.	MsG0080048805.01.T01	_
Oryza sativa L.	ChrUn.fgenesh.mRNA.85	expressed protein
Cucumis sativus L.	Csa007719	_
Glycyrrhiza uralensis Fisch.	Glyur000014s00002499.1	_
Codonopsis lanceolata	Cl_chr03_13750T	_
Arachis hypogaea L.	AH13G17670.1	Switch 2 like

Expression pattern