Gene detail

Detail information of Am05G020770.1 Annotation

Gene ID	Annotation
Am05G020770.1	nuclear assembly factor 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G020770.1	mRNA	Chr05	128237392	128240259	+

Sequences

CDS:

>Am05G020770.1
ATGGATACCCAACAGAACAACGTGCCGGAGCTTGACCCGAATCATATTGCGGCGGAAACACCGGAACCGGCGGCCGAAAAGCTTGATTCTTTGGATATTGATATTCCTATTGAGGAAGGCGTGGAGAAGATAACGTTAATTTGCGACCCTCCTTCAATAGAAGGGAAATGCGATGAGGATGAAGGCGAAAGCGAGAGCGAGAGTGAAAGTTCAGAGTCTGAGACTTCTTCTTCTTCCTCATCCTCCTCGGCATCCGCTTCTAGCAGCGAAAGTAGTAGCAGTGACAGTGATTGCGACGGCGATGATGAGGAGCCACGTCCTGCGGCTGATTTGGAAGTTGAAGAAGGCGAGGTAAGTGGTTCTGATGACGACAAGATGGTTAATTGGAGCGCTGTTGATGATGATGTTGATGATGGTGATGCTGTTGTAGAACCAATTAGGTCAAAGAATGAGATTCAGAACTTGCCTCCAGTTCCTCCAGTGGATGTGACCTTAGAACCACACCATCAAATGCTGCCAGTGGGAGCTGTTATGTCGGTTGTTGGTGCTCAAGTCATTGTCGAAGGAGTGGAAAAGCATGATCCTCTTAATGAGGGATCTATTATCTGGTTGACTGAAAGCCGACAACCACTTGGTTTAGTTGATGAGATTTTTGGACCAGTCAAAAACCCTTATTATATTGTGAGATATAATTCTGAAAATGAAGTTCCTGCAGGAATCCAAGCTGGAACTTCGGTCTCATTTGTTCCAGAATTTGCCAACCATGTACTTAATAACAAGGATCTTTACAAGAAAGGCTATGATGCATCTGGTGCGAATGATGAGGAGTTGTCTGATGAATATGAGTTTTCAGATGATGAGAAAGAGGCGGAATTTAGGAAAATGCAAAAAATGTCAAAGAGAGGTTCAAATGAACAAAATCCCAGCACGAGTAAATACAATAGAAAGAAAGTTGCACCGAAAGAGCATGTGTTACCTACCATCCCTGCTGCACCTGCAGCTCCGTTGGTTGGTCAGATAAACCGTTCACCTTTTTCAGGCACCGGACAAGGTGTATTAGGGGGAACTACCACAGTTCATCCATTTCCACCCTCAAATGCAGGTCCTAACTTTGCTACAAATGGAATGTGGACAAATGGGCCAACATTTCCACAGCAGCCACAGCCTGCCCTGTTTCCAAATGGATTTCCAACAAATAGCCTATCATGTTATCCACAAAACACACAAATGTCTCATCAGTTTCCTATGCAAGGACTTCCATTTCAACAGCAACTGCATCCTGGTCACGGATCTCCTTTCCCAACTATGCTACCTGGAGTAATTCCCAATATATTTGCACAACCCACATATGCACCGGGGTTTGTGGGTCAAAATCAAATGCCATTTGGTTTGAGCTCACCCTTCCCACAGATTCCGCAACCACCTACCTTTTCAGCACAGCAGGGTTTTCCACCTAGTGAATTGCAGTCAGAGAGAAACATAAATTTGCACTCTAGTTCTGTTCCTGGTACCCCCTCTCAGTTTCATACAGGTTCACAACCACCTATCTTTTCTGCACAACAGGGTTTTCCACCTACTGAACTGCAGCCAGAGAGAAACATAAATTTGCATTCTAGTTCTATTTCTGGTAACCCCTCTCAGTTTCATACAGGTTCATCATCTAGTCGAGGGAGAAAAACATTTCATCGTGGTGGTGGGAGAGGGTGGCGACCTGCTAAGTGA

Protein:

Promoter(3k):

>AM05G020770.1
GTAGTCACTTATTCTGCACTAATTTTGTGGAAGTGCTCATCTGGTTTTTCCCATTTCTACAAACAGTTGCACATTGGCTTTTGCATTTTTGCTGCAGTTGCTCCACCAATTATCTTCAAAGGAAAATCTCTCACGTGAGTGTCCTTCTATCGTGCAATTTATGTTTGTATTTTGCAAACTGACATTCTTTCGCAACTACTCTTTAACGGATTTGATCTTCTGGAGGAAAGGAAAACACTGGGGATGGGTGAAGCGTTCTGTAATTGAGCTTGTTGATTTCTCGTCTGGGGTTTAATCCACAAACTATTCAAGCGAAAGGGCATAAATTGGAAGCAATTTACCCTGCATATATTATATGTACCAACATAATGCCTGCCCGATAATCATCACTTTATTGTTAGTTTTGTTAGGGTTGACTGTATGTTCTCCATGATTTTGTTGTAGCTCAGTAATATGAACAAAGAAACGCAATTTTGTTTATTCTTGTCATTCCACTTCTGCTCAATACTAATGGTTGTAATGTATGCTATTATGTTGTGAACAGAGGTATTTTGGCTGCCATCGATGTGCTGGGCGGCAGTGCATTGGTTGGGGTATGTTCCAGTTGTTTATTTATGTAGTATTTGTTAAGCTTCTATAATGCCACTAGATATAGAAGTTTCCTGTCTCGAGGGGTATATTTGAAGTTATGATTTTACCTTCAAATGATGTTGATACTTGTGCTGATCTGCAGATATTCTACTTTATTGGGTTCGCTTTTTTCTGTCTTGAGTCGCTGCTGAGCATCTGGGTTTTTCAGGTTATAATCCTAGCACTGTAACAGTAGAAACTTTGCATTCTCTTGACTCTACTTTTTGGTTTCTTGTTTGACTAATGAATGATGTTATTTACAGCAAGTATTGATGTACTTCCGCGGCAGTGGCAAGGCTGCGGAAATGAAGCGTGAGGCAGCCAGAGGGACGATGATGGCAGCTCTATGATGTGGCATTAACAAATGTTTTTCCCAATATTATACCCCCAAAATTGATTTTCTCATTTACCCGTATCTTGCACCTTTTGCACCTTGCGTAATACTTGGATGTGTTTTCCTGGCTTTTTAGGCCAGGGTTGAGTTAAAACCACATAATTAAGATAGAAGTCGTAGTCGTGCATACATAGAAAAACATTGTTTGAAATTGCAACCTCAACGCATAACTTGTTCCATAGACTATCGTTTATATTGTTTATAGCAAATGGCTCTTCAGTTCATCTTAGTTACATGTTCTGTTGACTTGACACCGAGATCAATGTAGTCAGCATAAGAACAAAATCATAGTAATTGGGAAAAGGAATTGTGTGTAGAAATCTATGTACTAATTTATAGCGGATAAACTTTTTGCAAAGAGTTTGATATGATTAGTTTAGTGTTTTTTTACTAGGTTATAACATTTTTTGAAACACTATTTCAAGTAGCATTTGACCCCATAACTTAAAACATTTTTTACCAAAAATTTAAATTCAATTTTCTAGTTTATCTAAGCTAGTTTATTTGCTTTCTGCTAGCATATCACTATCCGCCCATTTTCACCAACGAGAGTAATAGTGACTTGTTAGAATCATAATCTTTTAAAATAATTTCAAAAAATCTCTTAAGATATAGAGAACGACCCAATTTATTTGTGGCTATATGAAAAGTCGGACATTTCCGTTGTATAACTATGATTTTGAAATCGTACGTCTCATGCAAAAGCAAAAATGATTTATGCTTACGATACTTTCTTGGAACAAAACTTGTCTTCAAATTAACAATTTTATACAACATCTTTCTTTACAAAGTATCTAAGGAATTTGAATTTTTTACAGACATTTAAATTCAACAAATTGTTGGATGAAAATGAGATAGTTTGTATTTTGAGTTTAGCATTTAAATTCAATTTACTGAAGTTTAAATGCGGGCTCTTTGAGATTCATCAAGATGACTTCTTGAATATGGTGACTATGGTCTTTGCTCCAAGAAAATCTAAAGCACGTGAAGGAGAATGAAAAATGGTAAAAAATGGAGAATGAATATGGTGACTATGTTTCTTTGACTTCAGAATACTAGTAAACCACATAGTCTTCCCCCAATAAAAAGCACTCGTGTCAATCCGAATAACCATACCAATGTCGTACTTGTTTTTGGAGCTGAATATGGCTGCGTCAATGTTGCATTTAAGCGTTCCGGTTGGAGGTTTCTGCCATTGAGACGCTGCTGGTGATGAACGATTCTCGTGTTGCTCTATCATACCCCTTCTCACCCTCGCAACATTCCAATTAAGAAGGTAGTCCAGCGCCTTGCTCACTGATAACGCCACTGGTTGTGTTAATCCAAGATAAATGAGTATGTTGATTGTTTATTCTAACGAAACTTAATAATTTTTTTAATTGAAAATGGATTTTATGAGAAAAATTGTGACTTGGTTCAAGTTAGACAATCCGTCTTGCCACATTCAGAACGAATGTTTTAACTTTAAAATACTCTTTTTTTTGTTGACAAATTTAAGGTGCTTTTAGAGTGAGAGAGCAAATCAAATCTCTCACCGGTGAATAATTAAATATGACCGTAAGATGTAGTATAAAAATTTAAACGATTGAGATTTAATACTGATTGATTCAATTTTTACCCCTCATAACATTTTACACAAAATCCTACGGTTAATTTTAGTGGTTCACCGGTGAAGAATTTGATTTACCTCGGAAGCACTTCAAATTTAAAATGAATTTATTAAAAAACAAAGCTAAAAAGTTTGCATACATAGTTCGAAATCTTTGAAAGCAATAAATAATAAATAATAATAAAGAAAATCTTGTAAGAGAGTGAAAGAGAAAGAAAGAAAAACGGCATCGTAGTGTTCCGGTGTATGTCAAAACTCAAAACCCTTATGTCTAGTCTAGGGTTTAAGCAGCGAAAGCGAAACTTGCTTTAAAACCATCGAGTTTTGCTTTCGATTCCGGGAATTTCGCCTCGCCTGGCAAATAGTA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04410.17	Gar1	172	255	2.30E-19

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003723	RNA binding	Molecular Function
GO:0001522	pseudouridine synthesis	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0042254	ribosome biogenesis	Biological Process
GO:0005840	ribosome	Cellular Component

InterPro

InterPro term	Description
IPR009000	Translation protein, beta-barrel domain superfamily
IPR038664	H/ACA RNP complex subunit Gar1/Naf1, Cbf5-binding domain
IPR007504	H/ACA ribonucleoprotein complex, subunit Gar1/Naf1
IPR040309	H/ACA ribonucleoprotein complex non-core subunit Naf1

trEMBL

trEMBL term	Description
A0A8B8KTA1	_

SwissProt

SwissProt term	Description
NAF1_SCHPO	H/ACA ribonucleoprotein complex non-core subunit NAF1

KEGG

KO	Description	Enzyme
K14763	H/ACA ribonucleoprotein complex non-core subunit NAF1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G03530	nuclear assembly factor 1
Medicago sativa L.	MsG0480020134.01.T01	_
Oryza sativa L.	LOC_Os05g42300.1	NAF1 domain containing protein, expressed
Cucumis sativus L.	_	_
Glycyrrhiza uralensis Fisch.	Glyur000954s00026529.1	_
Codonopsis lanceolata	Cl_chr05_15710T	_
Arachis hypogaea L.	AH13G16830.1	H/ACA ribonucleoprotein complex non-core subunit NAF1 like

Expression pattern