Gene detail

Detail information of Am05G018970.1 Annotation

Gene ID	Annotation
Am05G018970.1	homolog of histone chaperone HIRA

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G018970.1	mRNA	Chr05	122417067	122424856	-

Sequences

CDS:

>Am05G018970.1
ATGATTGCTGAGAAACCTAGCTGGGTTAGACATGAGGAGGGCATGCAGATTTTCTCCATTGATGTTCAACCATGTGGACTTAGGTTTGCTACTGGTGGCGGTGACCACAAGGTTCGTATATGGAACATGAAGTCTGTTTCTAGGGACATAACTAATGATGTTGAGTCTTCTCAGAGGCTGCTTGCTACCCTGCGGGATCATTTTGGGTCTGTAAACTGTGTTAGGTGGGCTAAGCATGGAAGGTATATCGCATCTGGGTCGGACGATCAGGTGATATTAATTCATGAGAGAAAGCCTGGTTCAGGTACCACAGAATTTGGTAGTGGAGAGCCGCCGGATATTGAAAACTGGAAAGTTGCAATGACTTTGAGAGGGCACACTGCAGATGTGGTGGATCTTAATTGGTCACCTGATGACTCCACATTGGCTAGTGGGAGTTTGGACAACACCATCCATATATGGAATATGAGTAATGGCATTTGCACTGCTGTTCTAAGGGGCCACTCTAGTCTGGTCAAGGGGGTTGCTTGGGATCCTATTGGATCTTTTATAGCAAGTCAATCTGATGATAAAACAGTCATTATTTGGAAAACTAGTGATTGGAGTCTTGCTCATAGGACAGATGGTCACTGGGCTAAATCACTTGGATCAACCTTCTTCAGGCGACTTGGATGGTCTCCATGTGGTCATTTTATCACCACTACTCATGGTTTCCAGAAGCCAAGGCATTCTGCCCCTGTGCTTGAGAGAGGAGAATGGTCTGCAACATTTGACTTCTTAGGACACAATGCTCCAATTATTGTGGTCAAGTTCAATCATTCGATGTTCAAAAGAAGTTGCTCTAATGCTCAAGAAGTGAAGTCTGTGCCTGTTGGGTGGGCCAATGGTTCTTCCAAGACAGGAAGCAAAGAGCCACAGCCGTACAATGTTATTGCCATTGGAAGTCAGGATCGAACTATAACTGTATGGACTACTGCAAGTCCTCGTCCTCTTTTTGTAGCGAAGCATTTCTTTACTCAAAGTGTTGTGGATTTATCCTGGAGCCCTGATGGATACTCACTTTTTGCCTGTTCCTTGGATGGATCTGTTGCTACATTTCATTTTGAGGTGAAAGAACTTGGTCAGAGACTGAGTGACGCCGAGTTAGATGAGTTGAAGAGAAGTCGCTATGGTGATGTGAGGGGTCGTCAAGCAAACTTAGCAGAGAGTCCAGCACAGTTATTGCTAGAAGCTGCTTCTGCCAAACAAACCCCAAGCAAAAAAGTGGTTTCTGATCGGCCAAACCCAAACCAGACAACTGCAAAAGCTTATGTTGATACGCGCGTTGGTGCAAAGAATGCTGAGCCTCAAGTCGACCATAATAAGAAGAGTGGTGGTCCTGTTAGTGATGGGTTAAACAAAGCTGCATCCTCTGCCCGGATTTCTAGCCCTGTCAAACAAAGAGAGTATAGGCGTGCTGATGGCAGAAAAAGAATTATTCCAGAAGCAGTTGGAGTGCCTGTTCAGCCAGAAAACATTTCTTCTGCGGTTCAGTCCCAAGCTCTTGATTTCCCTCTCTTGTCTTCTGATCAACAAAGGGGTGCCAATGGAGTTGCATCTAATGATGATAGAGTAAGAACAAGTACCATAGGTGGAGCACTTGGCAGAAATTCAGATTTAAAAGAGCGTTCTGGGGTTACTGCTAGGGCCACAATTTCTGAGAGTCTAGTGATTGAAAAGGTTCCACCTTCTTCTTGCACAGATACAAACATCAATGTTGAGCAGCTGGGGAATTCGATGACTACTGGTTCCTTGTCTGCTTCTCATGCTACTCTTTCCATTAGGGTGTTTGACAAGAAAGATGGGGAGGATACTTTACCTATTTGTTTGGAAGCACGCCCACGAGAACATGCTGTGAATGACATTGTAGGGGTCGGAAAAACGTCCATGATGAGAGAAACAGAAATTGCTTGCACCAGGGGGCCTCAAACACTTTGGTCTGATAGAATATCAGGAAAAGTCACTGTTTTAGCTGGAAATGCAAATTTTTGGGCGGTTGGCTGTGAAGATGGATGTCTGCAGATTTACACAAAGTGTGGGAGACGAGCGATGCCTACCATGATGATGGGATCTGCAGCAACATTTGTAGACTGTGATGAATGCTGGAAGTTGTTGCTGGTGACAAGAAAAGGATCCCTTTATTTATGGGATTTATTCAACCGAACCTGTCTCCTTCAAGACTCGCTGGCTTCCCTTGTTGCTTCAAGTCCTGGCTTATCTGCTAAAGATGCTGGCACTATTAAAGTTATATCCGTAAAGCTATCAAAATCTGGTTCTCCTCTTGTTGTTTTGGCCACTCGTCATGCTTTCCTATTCGACATGAGTCTCAAGTGTTGGCTAAGGGTTGCCGATGACTGCTTCCCTGCATCAAATTTTGCCAGCTCCTGGAGTTTGGGATCAATTCAAAGTGGTGAATTGGCTGCTTTGCAGGTCGATGTTAGAAAATATTTGGCCCGGAAGCCAGGATGGACTAGAGTGACTGATGATGGAGTACAGACACGTGCTCACTTGGAAGCTCAGTTGGCCTCTTCTTTGGCTTTGGGATCCCCTAATGAATATCGCCAATGCCTATTGTCCTATGTGCGCTTTCTTGCAAGAGAAGCGGATGAATCTCGATTACGAGAAGTCTGTGAGAGTTTCCTTGGACCTCCGACAGGCATGGCTGACGAGGCATCAATGATGGACAAGAGTTTGGCATGGGATCCTTTTGTGCTTGGAATGAGGAAACACAAACTCCTTATTGAAGACATTCTTCCAGCCATGGCATCAAACAGGAAAGTCCAGAGACTGCTTAACGAATTCATGGATTTGGTATCTGAATACGAAATTGCCGATACTAATCAGGATCAAAGAAATCCAGTGTTACCTAAGACATCTTCACATGTGACCAATCAAAGAGAGAGTGGTTCATTATCATTAGCAACACATGTAAAAGACACTGCTCCACCAAAATCAGATCAGAACAATCCTAGGGATGCAGACATAGATGGGGAGCACATTGCAAAGGTGGCAAAAAATAACAAAAATTCGACTCCACATGCAAATGAAGCAAGTGTGCATGATCAAGTTGTCCTGGATACACCAGATCAGGAATGA

Protein:

>Am05G018970.1
MIAEKPSWVRHEEGMQIFSIDVQPCGLRFATGGGDHKVRIWNMKSVSRDITNDVESSQRLLATLRDHFGSVNCVRWAKHGRYIASGSDDQVILIHERKPGSGTTEFGSGEPPDIENWKVAMTLRGHTADVVDLNWSPDDSTLASGSLDNTIHIWNMSNGICTAVLRGHSSLVKGVAWDPIGSFIASQSDDKTVIIWKTSDWSLAHRTDGHWAKSLGSTFFRRLGWSPCGHFITTTHGFQKPRHSAPVLERGEWSATFDFLGHNAPIIVVKFNHSMFKRSCSNAQEVKSVPVGWANGSSKTGSKEPQPYNVIAIGSQDRTITVWTTASPRPLFVAKHFFTQSVVDLSWSPDGYSLFACSLDGSVATFHFEVKELGQRLSDAELDELKRSRYGDVRGRQANLAESPAQLLLEAASAKQTPSKKVVSDRPNPNQTTAKAYVDTRVGAKNAEPQVDHNKKSGGPVSDGLNKAASSARISSPVKQREYRRADGRKRIIPEAVGVPVQPENISSAVQSQALDFPLLSSDQQRGANGVASNDDRVRTSTIGGALGRNSDLKERSGVTARATISESLVIEKVPPSSCTDTNINVEQLGNSMTTGSLSASHATLSIRVFDKKDGEDTLPICLEARPREHAVNDIVGVGKTSMMRETEIACTRGPQTLWSDRISGKVTVLAGNANFWAVGCEDGCLQIYTKCGRRAMPTMMMGSAATFVDCDECWKLLLVTRKGSLYLWDLFNRTCLLQDSLASLVASSPGLSAKDAGTIKVISVKLSKSGSPLVVLATRHAFLFDMSLKCWLRVADDCFPASNFASSWSLGSIQSGELAALQVDVRKYLARKPGWTRVTDDGVQTRAHLEAQLASSLALGSPNEYRQCLLSYVRFLAREADESRLREVCESFLGPPTGMADEASMMDKSLAWDPFVLGMRKHKLLIEDILPAMASNRKVQRLLNEFMDLVSEYEIADTNQDQRNPVLPKTSSHVTNQRESGSLSLATHVKDTAPPKSDQNNPRDADIDGEHIAKVAKNNKNSTPHANEASVHDQVVLDTPDQE*

Promoter(3k):

>AM05G018970.1
TCTAGAAACCATATCTAACCTATCTTGATACATAAAACAATTTTTTTCAAAATAGGAAGACAATTTAAGCTCATTATGATGATAGGTAAATGTAATAAAGAGATCAAGATATCCAACCCAACCACATATTGCCATAGAATCCTGATAATTTTGAAACATATAGCGCACACCTCCTATGATAGTTGAAGGAAGGATAATTTGTTTCTCGGTTGATGCTGAATTTCTCCTTGTAAAACTGCTTCAAGCAAACCATTATATAGAAGAGCTCTGAGATCTGTCTGGTGAAACCTAACCCATTATAACTTTGTTCCTTTGATCATGCTATAACCATCAACCAAAAATTGTTGAAATAAATGCCCCCGAACAACAGAATTGAATTCTCATAAACTCAATAATTCTATATGCAAACCATTATTTGAATGTTACCGTTCCTCGTTTGATTGTTTGAGTGGTGGAAGGAGAACTGAATTGGATATTGCATCGGATATTGCATCGGAAAATAAGAAGGACTCAAAAGAGGGACCCGCTGCAACAACCTTGATTGTGTCTGAACAACAATATCTCTACCAAGCTCAGTTGTGTTAAAATAACCTACAATAAGTGCTACCACTTCAGATGTAGTAGGTAGGTTATACCGACTGGAGTACAAGATAGAGGATGTTGTAACATCCTAAACGTTTGCCCATAACAGGTTGAATAGATATTTTAGACTAAAAGAAATGTGGTTCAGAAAAATATAATGAGAATAAGTATAACTATAAATTGATTTTTTAATGTGGTTTTTCTATTATGGCAAAAATTAAAAAATCCTTTTAAAAATAAAATGGGTCTAAAAAATCAACTTTTGGTTCAGGAATCACCAAAAGTGATCTAATGCAGATATAACAGATGTTTTAGATTTAAATGTTACTATGAAAAATCTTTGTGTTGGCTAAACCGACCGTGGATAAGGTGTACTCACTGACTTTGTGATTTTGGGTTAAGAAAAATGTGATTTAAAAGAATCAAGAAAAGATGTGTAAATATAAATTGTTTTTATTTTTTAAGTTAAGTTAATTTTTTAAGTAGTGAAAAACTGAAGATAGTAAAACAAAAGTGGACCAAAGCCCATATAACCCAAGTGGGGCCATAAATAATTTTTTTTAAAATAGATGGATAGCTTAGAAAAAAAGTTTTAAAAAAAGAAGAATAAAAAAAATAACCAAAGAGCCAAAAAAAGTAAAGAAAAAAAGCGGAGTAGACAGTAGTCCACCAAAAAAAGACCGAGAGTTTAGCATGCCAATCCAACTGCAGAACTGGCTTCGCTTTAAATATAAGATTAAATACTTCAATAAAATGTTTTTAATATGGACCGATCATCCATTGGTCACAACAATGGATTAGTGGATCTATGGTCAAATGGGTGGGTCCCAAATTGACCTGCCCAGTCGATTCAACTAATAAGTTACGTAAAAGTTTTCACAAAAACGAAACAACACCATTTTAAGGTAGGAAATAAAAGTAATAATTCATGACCGGCTCGTTAACCTATTCGATCGCAAAAGTAGTTAGGTCACATTCTATCAAACCATATATGTAATATGTCCAATTCGAGACTTGCTTAGATCGACCATACCACTAGTTACCAGTCAGACCGACCATTTCGAGCGCAAATTAATAACACAGTTGTAAAAAAAACATTAGTGGAATATTTATTTTTCCAATACATAACTTATTTTTGTCTGGTTTGAAAATATTAGTTCACCGCTAGTCAAAAAAAAGTATTAGTTCACATGTCTCAATTTTTTTGACAAGACATGATGTCTCATTTTTTTTGGGTACAAACATGTCTTATTTAAATAAATGATAAAATGAAGACGTTCCTTTCAATATTTTTAATAAGATCTTAATATTTCAAATCAAGCACATACTTTTGTCCAAGGGGTACTTAATTTGAGTATGACATTCGTTTTCTTAATGAATTTCGATGTCACTAAATTATTACTAGGTTGTAATTCAACAAAAAAAAAACTAATATTAGGTTTTATTATTAAGCAATAAAAGACGAGAACCGAACTCAAATGGGTTGACCTAATGGAGAGTGCTAAATCCATTAAGCATTAGGGTTATGTACATTGTATAAAAAATTAATAATACTCTCAAGATGAGAAATATCGGCTCCAACCCAAAAAAAATATCCACATTTTATTTATTTATTATATAGAAAAAATCCAAGTTGCGGTATATATATATATATATATAAAACAATAGTTCTTTCTTTACCCACCATACACAGACAAATAGCACATTCACTTCTTGGTTAACAGTTTTCTTGTAGTCTTGCAGGTCAGGTCAGGGGGCACATCTTATTGAACTTATGCTGAACCCAAAATCACCATTTTTTTTTGATAATACGGTAAGTTACCACTCACAATCACATTTTAATCCTTTGTTTTCCCAATTAAATCCATTAATTTTGTTCTCTAATTTTTTTCGTCTGTCTATCTATCAAACCCTTTTTATCTGCTAATCCTAATACTATTAATCATATTTATCATTTCATTTTGAAGCTTTTAGCTTCTTTTGAGATTTGACCGTTAAAGCGGAAGTTAACTCCTCCATTTTCGTCAATACCTTACATAATTTTGTAGGGTTTTTGCTTATATTACCCTAAAGCTTGGTGCTTTGTCTTTTTCACTTTTACTTCCCCTTTTTCACAAAATAACAAAAATATTATAAAATACTCTTTTTTCAGGTTTGTTCTCTATTTGTGTTATTTTCCCTTCATCAAGATACTTGCTTGATTTTTACGTGCCGTTCTTAATTGCGTTTTACTGATTCTGGTTTTGGCAATGCTTTTGGGGGTGAAATGAATCTCGTAGGTTTTGAACTGAGTGGGTGAAGTTCTCAACACTCTTCACTCCCCCATCTGAAGAGAATAGGAAAAGTTGTAGAATTTGTTGCATCAAATTGAAATAAAAAGGAGCTGTTTATAGGTTCAAAAGAAGATATTTTTGGAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF07569.14	Hira	693	893	4.30E-53
PF00400.35	WD40	121	155	1.10E-26
PF00400.35	WD40	161	197	1.10E-26

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD
Epigenetic Regulators	HIRA1

Gene Ontology

GO term	Description	Category
GO:0031491	nucleosome binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0006351	DNA-templated transcription	Biological Process
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0000785	chromatin	Cellular Component

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR019775	WD40 repeat, conserved site
IPR001680	WD40 repeat
IPR031120	WD repeat HIR1-like
IPR011494	Protein HIRA-like, C-terminal

trEMBL

trEMBL term	Description
A0A072UVK7	_

SwissProt

SwissProt term	Description
HIRA_ORYSJ	Protein HIRA

KEGG

KO	Description	Enzyme
K11293	protein HIRA/HIR1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G44530	homolog of histone chaperone HIRA
Medicago sativa L.	MsG0480020558.01.T01	_
Oryza sativa L.	LOC_Os09g39420.1	WD domain, G-beta repeat domain containing protein, expressed
Cucumis sativus L.	Csa019711	_
Glycyrrhiza uralensis Fisch.	Glyur000104s00005972.1	_
Codonopsis lanceolata	Cl_chr06_17200T	_
Arachis hypogaea L.	AH12G03820.1	Protein HIRA like

Expression pattern