Gene detail

Detail information of Am05G018180.1 Annotation

Gene ID	Annotation
Am05G018180.1	chaperonin-60alpha

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G018180.1	mRNA	Chr05	119192493	119196090	+

Sequences

CDS:

>Am05G018180.1
ATGGCTTCTACCAACGCTCTTTCCTCAGCCTCCATTCTAGGCTCTCCCAGGCACCAGACGAGTCTCAGAAGGAATGTCAACCAAAACGCAAGGGTAAATTACAGGAAACCTACCAACCGTTTTTCGGTTAAAGCCTCTGCGAAAGATATTGCCTTTGACCAACATTCACGCGCCGCAATGCAAGCCGGCATAGATAAACTTGCTGACGCCGTTGCTCTCACTCTCGGCCCCAGAGGGAGGAATGTTGTTTTGGATGAGTTTGGTAGTCCTAAGGTAGTTAATGATGGTGTGACAATTGCAAGAGCTATTGAATTACCTGACCCTATGGAAAATGCTGGTGCTGCTTTGATTAGAGAGGTTGCAAGTAAAACCAATGACTCTGCTGGAGACGGAACCACGACGGCTTCGATTCTAGCTCGGGAAATTATTAAGCTTGGACTTCTCAATGTGACCTCTGGTGCTAATCCCGTGTCCATCAAGAAAGGGATTGATAAAACTGTGCAGGGTTTGATTGCGGAGCTTGAGAAGAAAGCTAGGCCTGTTAAAGGTGGAGATGATATAAGAGCCGTTGCTTCTATTTCTGCTGGGAATGATGAGTTGATTGGACAAATGATTGCGGATGCAATTGACAAGGTTGGACCTGATGGTGTTTTATCCATTGAGTCTTCGTCTTCATTTGAGACAACTGTTGAAGTTGAAGAAGGAATGGAGATTGACAGAGGGTATATCTCCCCTCAATTTGTTACAAACCCAGAGAAATCAATTGTTGAATTTGAGAATGCAAGAGTCTTGATTACAGATCAAAAGATATCAGCAATAAAAGATATTATTCCCCTACTGGAGAAAACCACTCAATTGAGAGCTCCCTTGCTTATCATTGCTGAAGATATCACTGGTGAAGCTTTGGCTACCCTTGTTGTGAATAAGTTGCGTGGAATCCTTAATGTTGCTGCCATCAAAGCACCAAGCTTTGGTGAGAGGCGAAAAGCCCTCCTTCAAGACATTGCTATATTGACAGGTGCTGAGTTCCAGGCAAGTGATTTGGGCCTTCTTGTTGAAAATACCTCAATTGAACAACTTGGTTTGGCTCGGAAAGTGACCATTTCCAAGGATTCTACCACTATTATTGCTGATGCTGCATCAAAGGATGAGTTGCAAGCCAGGGTTGCACAATTGAAGAAAGAGTTGTCTGAGACAGACTCTGTTTATGATTCTGAGAAACTGGCTGAGAGGATTGCTAAATTGTCTGGTGGTGTTGCAGTCATCAAGGTTGGTGCTGCTACTGAGACTGAACTTGAGGACCGCAAGCTACGAATTGAGGATGCCAAGAATGCAACATTTGCTGCTATTGAGGAAGGTATCGTTCCTGGCGGAGGTACTGCATTGGTTCACCTCTCTGCTTTTGTCACAGCAATCAAGGAAAAACTTGACGATGCAGATGAGAGGCTAGGAGCCGACATTGTGCAAAAGGCACTGGTAGCACCTGCATCATTGATTGCTCAAAATGCCGGAATAGAGGGCGAAGTAGTTGTGGAGAAAATAAGGAATGGTGAATGGGAGGTTGGTTACAATGCCATGACAGATAAGTATGAGAATTTAGTTGAGGCTGGAGTCATCGATCCTGCTAAGGTAACAAGGTGTGCTTTGCAAAATGCGGCTTCAGTGGCTGGGATGGTCTTGACCACGCAGGCTATAGTTGTGGAAAAACCTAAGCCCAAGGCACCTGTGGCAGGTGCCCCACAAGGCCTTACTGTTTGA

Protein:

Promoter(3k):

>AM05G018180.1
TCTCTCCTTCGCATCTCACCACCGTCGCTCGTCGCACTCGCTCGTCGCTCGTCGCTCTCGTCTCCCCGTTCTCTCGATCTCGCTCTCGCAGATCGCAGATCTCATTCGGTGGTGGGGTGGGGTCGGTGGTGTGGTGGGGTGGGGTGGAATGGGGTGGGGGGGATCGGTGGGGAAGACGAACAGTGGAGGGGTGGGGGTGGGGGGTGCGCCTACGTGGCAGTCCACGTGGGCTGCCACGTAGGATAAGTCAGTCAAAATTGAACAGGGAGACTATGATTTTTCAAATTGGGAAAATAGGGGGACCAAAATCGTCAAATTAAAACTTCAGAGACCAAAATCGAGAATTGGTCATAATAGGGGGACCAAAACTGTAATTAAGCCTATTTTTTTAGTTGAGGTTGTATTAAAATAATTAATATCAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTGTGTGTGTATAACTTATAAAAAATAGGGCACAAATTCATAAGTCGGGGGCACCCAAACTCTCGAGAACGTCCTTGAGAGCACTTTGTCAAAAGTTCTATAGAAAAGTGTGCTCAAGTAAAGTTATTTGGGCAGAACTTTGAGCATTTTGAATTGACATAAAATTGACAAGGAGCTTTAAGTTAAATTCATTGGAGTTTGAGATGGACTCCAAGGTTATTGTTGATACAATACATGTTGGATCTTATAGTAATGTTTTCCTCTTATTCAAGATATTAATTTTCTTCTAGATCTCCCAGATCGAAACACCTCCACACTTCATGTTTATAGGGAGGCCAAACATTACAGATCGAAACACCTCTTAGCTAATTTAGATCACTCAATCTTTAATTTATTTTGGAGGATGTATGTCCATCTCTTAATTTATTTCTTTTGAATAATGTAAGAGGTATTTCTTTTTTTACCCAACGTAAGAGGTATTTCTATTTCTTGATTGACTGATTTTTTAATAAATTATTTTTTCCATAAAAAACCCGAGAAAATTTATAGAAATAAGTTGACAATAATGTATGTTTTGTTTGACAATGTGACTCCGCTAGCTTATAGTGGATGGGCCATTGGTAAGTGTTTGCCAATGATAGATTTTTTTTTTGATAAGCAATGGAATTAAAGGGGGCACAAGGGTTGCTCCAACCCTTACAACAGTGTTTCAGGGGGTATTGTTAAAACCTCCAAGGGCCAAAACCCTGTGGAAAAAAGACCCAAAGAAGAAAAAGAGTACCCCCATGAAAAAAAGACCCAATGTAAGATGATTTACAGTTTTGTCTTCCCTGAAACACATCACGTAGCAAGTCTTGTGCTCATGTGAGACGATACCCCTCCTTACAAATAAATCACGAGTGAGCAACCTGTTAATGAGAGCCTCCACACAAACATCGCCGCCTTCGTCGGTACATCGCACATCCATATCTTTGAGCAGCTTGCAATTAAATCCCTGCCAATAAAATTGGTTGTACCTGCAAAAATTCAACCAACCAGCAATAGCAAGATTTTACAGAGAACTCTTTTTTATTATCGATTTCCCACACCCACTTCTCTACATTAGCGCTATTCAGCATTGTGTCCTGCAATATCATCTTCAGTTCCAATGCCTCTTCAATATCTGCTGCTGATAAATCATTAAACCAGGCCCAGTTCCAAACCCACCTGTTGTCAATCCACTGCTCAAACTGTCTTACTGCAGCTGCTTTTTCGTTGCACGCTTGGTATAGGATCGGGAATAAAAAGGAGAATCAAGTAGGACCACACCACACATCCTGCCAAAACCTGAGTTTATCTCCTTTTCCCAGCTGTAGTTTAGATATATTGTTGAACCAGAGCGGATCCTTCATGAAGTATGATCCCAACAGATTGATATCACGCCACCACAATGAAGACCTTTTGAGGATTTGACTTTCACGCCATTTGCATACGTTTCCATACCTGCTCACCGGTAAATTGAACCAGAGAATGTCGCTACCTGTCATGCACTTCCATCTCCACTTACTCAATAAGGCAATATTGAAAGCTTTCAAATTTTTTATCCCAAGTCCTCCCTTGTCCTTTGGGAGGCATACAACATCCCATTTGACCCAAAACATCTTTTTCTGATATTCGCTTCCACCCCATAAGAACTGTCTCTGTAATCTATTAATCTCTTTAATAACCTTCTTTGGAGCCTTGAAAAATGAGAAGAAATAGAGCGGGAGGGCGGATAAAACCAAATTGATTAAGGTAATCCCTCCTCCAATTGAGAGTTGTTTGCTTCTCCATGTGGATAATTTCAATCTTACCGTTTTCAAAACCGGCTCCCAAGTATTGTATCTTCTTGGATTTGCACCAACCGGAAACCCAAGGAATTTAAAAGGAATTTTACCTATACTGCATGCCAAAAATGTTGTCGCATTCCGAAGAGCCCTTTCCTCTATAAGCAAAAATGTTGACGCATTCGAAGAGCCCCCTCCTCTATGAAATAGCGTTTGAATTCATAGCTTATAACGTTTCATTTTTTCTCTCATTTTTACCTTTGCTATTTTAATAAAATTCCTTAGTTATTCTCCATTAAATGAATATTCTCTCTCACATTTAAACATTAATTACAAATGTCTATTTATGTTATTTTATATTTATAAGCTAATTCAACCACTAATTTTACCAAAAACTTTAAATTTAATCTACTAATTTATCCGCTATCTGTTTTCCACTATCAGCTCATTCACTGTAAGCTAGTTTATACGGTATCCGCCGACTTATAAGCTAACTTATCCCTAGCTTATACGCTAACTTATGTAAGCCTAAATAAATATAAACCAATAGAAAGAAGCCGCTCAACAACTTGGGAACGGGACGAATATTCTAGAAACACGTTTGTTACAATAAAAGCCCAAACCCTAAACCTTTCTCTTTTGTTCCGGCGATAGAACTCCTTATCCACACTTCTCTACACACTTCTAGTTCTAACTCCGAACGCTCTAAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00118.27	Cpn60_TCP1	67	570	2.10E-95

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0042026	protein refolding	Biological Process
GO:0140662	ATP-dependent protein folding chaperone	Molecular Function
GO:0009507	chloroplast	Cellular Component
GO:0005524	ATP binding	Molecular Function

InterPro

InterPro term	Description
IPR027410	TCP-1-like chaperonin intermediate domain superfamily
IPR027413	GroEL-like equatorial domain superfamily
IPR027409	GroEL-like apical domain superfamily
IPR002423	Chaperonin Cpn60/GroEL/TCP-1 family
IPR001844	Chaperonin Cpn60/GroEL
IPR018370	Chaperonin Cpn60, conserved site

trEMBL

trEMBL term	Description
A0A6A4NV51	_

SwissProt

SwissProt term	Description
RUBA_PEA	RuBisCO large subunit-binding protein subunit alpha, chloroplastic

KEGG

KO	Description	Enzyme
K04077	chaperonin GroEL	[EC: 5.6.1.7]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G28000	chaperonin-60alpha
Medicago sativa L.	MsG0480020758.01.T01	_
Oryza sativa L.	LOC_Os12g17910.1	T-complex protein, putative, expressed
Cucumis sativus L.	Csa015205	_
Glycyrrhiza uralensis Fisch.	Glyur000093s00009384.1	_
Codonopsis lanceolata	Cl_chr06_18090T	_
Arachis hypogaea L.	AH03G00960.1	RuBisCO large subunit-binding protein subunit alpha, chloroplastic like

Expression pattern