Gene detail

Detail information of Am05G017850.1 Annotation

Gene ID	Annotation
Am05G017850.1	Ribosomal protein L11 family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G017850.1	mRNA	Chr05	116129415	116130246	-

Sequences

CDS:

Protein:

Promoter(3k):

>AM05G017850.1
TTCCTCTAGAGAGTCTATTAATGCTACTCCATTTAGACTTACGTTTGGGCATGATGGAGTGTTGCTAGTCGAAAATCAGCTAGGATTCAAAGGCAATATGAGATTCCATCAGATTATTATTGGAATATGATGTTAGATGAACTAATTGATCTAGATGAAGAAAGATTAGCTGCATTAAATGTCCTTACAAGGCAAAAAGAAAGAATAGCCAAAGCCTACAATAGAAGGGCTAAGTTCAAAACGTTTGCCTTGGGAGACCTAATTTGGAAAGTTATTTTGCCTATGGACAAAAAAGATAGAGTCTTAGGTAAATGGTCATCAAATTGGGAAGGACCATTTCGAATTTCGCAGGTTTTTTCTAATGGTGCCTATGAAATCGAAGAATTAGGCGCTGATAGTCGAATTTTGCGGATAAATGGCAAGTATTTAAAAAAATATAAGCCAATATTGCAAGAAGTTAAAATAACACAAGAGTAAAATAGCGAAGAGAGAGGTTTGCTTTTATACTGAATTAAAAAAGAATAAAAAAAATGGGGGGAAAGCTTTTGCATATCCCACTACACTGACAGTTGTGTAATGATGTAGTGGAGAGTTCCAATTCAAACGTGGCCCACTACCTTTCAAAAGGCGGCCCATTACGTGATGTTAATGACGTCATCAGACTTGACATAAAGCTGTTAAGTTCTGGTTTCAAAAACGTTTCTACCTTCATTTAAGACTCTGTCGAAAAGGCCCTTTTTGGGGGGCAATTTGTTAGCCTGCATTTTCGACAAGCTCAATTAAATGCAGTCAATGAAGTTTGACTTGTCATTTTAAAGAGGAAATGTTGGACTTCGACACTGAGAAGGTATTTCAAGGGAGATCTTCGACCACTCCTAGAACTTAACGAAATTGAGAGCTTGAAGGCGACATTTCGACAAGAAAGAAAGTGAGAGATTGGTAGTAGATCAGAGCCAAAGAAGTGCTGTCGAAGAGCATAGCAGTTACGCCGTCGGAGGATACAGCAGTTGTTGTCGAAAGGTGCAGCAGTTACGTCGTCAAAAGATATGGCAGTTGCTGTTTTAAGTTCCTTTGCACAGTTATGTGTAACCGTTGTAAGCAGTTACAGTTTCTGCACAGTATATATAGTAGTTTTCCATAAGGAAAACAGGTCACAAACTCATTACACAAATTCTCACGCTCTACTTCCAAGTTAAAGCAAAAAACGAGCCCAGAGAAGCAATGTATGATTGTGTACCGCTTTTCTCTTTTTAATGCAATTTTACTTTGTTTATTTCTAATTCCTGCACTTTTTACCTTCTTTGTTTTATGCAATTCTCTTCTTTTCTGGAATAATTCATTAGTTTCGCAAGAAACATTGAATTTCTTTCTTTTCTTTAACTTAACCCGTAAGAAACCCGTGTTTTCTAAAACAACTTTTATCCAAACTGTCTTGGGATTTACTAGTTGATCCCGCAAGTAAACCAAACTGAAAACTAGCGGTGTTTACCAAAATCCACGGTAAACAATAGGTTAACAAATATATCAGTGAGTTTACAAAAACCATTACATGATTTGATCCCACACAATAGTGAAAATCACAACTCTCACCATGGTCTAAGACCTGTTCAACTAAATTAAGTCTCGAGAGAAGCTTCCCTTCTCGACCACACACCTCAAGACCATTAGAACCGTAGCTTCCTAACATGTCATTATCAATAAAAGGTAGAACAATAGAATACAATTCTTTTTATGCTATTATCAACATGCTAGAAAATATATAAGTAAAATCTACAAAACCATTACATAATTTGATCTTAGACAATACTCAAAATCAAACTCACTCGCTATGGTCTAAGACCTATCCAACTAAATTAAGTCTTGAGAGAAGCTTCCCTTCTCAAGCAAACCTCAAGACCATCAGAAGCAACTTGCTAACATGTCATGATATTGCTATTACCCCATGTCAAGCTTTTAGACCAAGTTTTGGCATAACAAAAGATGAATGTGTGAACTTACAATAATATCTAGCACGCACGGTTTAAGCCACTCACAAAAGCTTACACATAACACATGCGATTAGGCCAATTGCAAAAATGTGGGAGAAATGTAGTTCTGCGATACCACTTCAAGTGCATAAATGTGGATGAAATGTCACTGACCTGCAAAGTGCTCCAATAGGATGAAAATGGCCAATGATCGCGCGCAGAATGCTTGAGTTGCCACTTGTTGCGTGACATTTCATGAGAATGAGAGTGCACATAGGACGCTATAGTTGGGACTAGTTGGGAGGATGTTTAAGGCAAGGATGACTGCCAATGATGTTCTTCTCAAAGGTAACAAGTGAGTGAGTGGGAGGTCACATCATTTTAAAATCAGGAGTTGGAAACAAAAATATAATACGAAATGTTTGTTGAGTGGGCCGGGGTTCATGATTTTATCATGAATATCAAGGAGGACCATGAATACGACATGCTGTTGTGTTTGAAAAAAATATATGAATCAACAATTCAGTCATGAAATAGTAGAGCAGTGTAAATTTAGTCTTTAATTGTATTAATATACCAATGTAGTTTCTGAAATTTAAATTCTTCGAAACATCAATAAGATTGAACATTTTCGATTACAATGAACATTTTAAAATATTATTAACTTAATGGACTAAATTTATATAATACTAGACAATTTAAGATATAAATTAATAATTTACTCAAAACACAATTCTTTTTTGTAACTGAAAAGTAGAAAAGACTCTAAAGGGGGGGAGGGAGTATTAGAAAAAAATATATGATGCTAATAGTAATCCGTACACATGTTTTTTTTTGTTTTCTGAATTGTCTGATACGAGGTTCATAGCCCAAAGCACAAGTCCACCTGCTTGAGCTGCATATGCCAAAAGCCCAAAGTTAAATGAGAGCAAAAACCCTACCAATATATATCATCCCCTTCTGTATAACGCACTCGCGTCGCTGCGCTCGTCTTTTCCTGTGAAACCCTAATCTCTCTGCAAATAGTGCAACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03946.17	Ribosomal_L11_N	13	69	1.70E-18
PF00298.22	Ribosomal_L11	75	144	4.80E-17

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0070180	large ribosomal subunit rRNA binding	Molecular Function
GO:0022625	cytosolic large ribosomal subunit	Cellular Component
GO:0006412	translation	Biological Process
GO:0003735	structural constituent of ribosome	Molecular Function

InterPro

InterPro term	Description
IPR036796	Ribosomal protein L11/L12, N-terminal domain superfamily
IPR000911	Ribosomal protein L11/L12
IPR020784	Ribosomal protein L11, N-terminal
IPR036769	Ribosomal protein L11, C-terminal domain superfamily
IPR020783	Ribosomal protein L11, C-terminal
IPR020785	Ribosomal protein L11, conserved site

trEMBL

trEMBL term	Description
A0AAE1Z2N8	_

SwissProt

SwissProt term	Description
RL12_PRUAR	Large ribosomal subunit protein uL11

KEGG

KO	Description	Enzyme
K02870	large subunit ribosomal protein L12e

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G37190	Ribosomal protein L11 family protein
Medicago sativa L.	MsG0180003585.01.T01	_
Oryza sativa L.	LOC_Os02g47140.1	L11 domain containing ribosomal protein, putative, expressed
Cucumis sativus L.	Csa004722	_
Glycyrrhiza uralensis Fisch.	Glyur000494s00017398.1	_
Codonopsis lanceolata	Cl_chr06_22870T	_
Arachis hypogaea L.	AH03G01370.1	60S ribosomal protein L12 like

Expression pattern