| Gene ID | Annotation |
|---|---|
| Am05G017760.1 | zinc finger (CCCH-type) family protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am05G017760.1 | mRNA | Chr05 | 115881275 | 115888574 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF05958.14 | tRNA_U5-meth_tr | 536 | 629 | 1.10E-16 |
| PF05958.14 | tRNA_U5-meth_tr | 702 | 752 | 1.10E-16 |
| PF13847.9 | Methyltransf_31 | 572 | 630 | 1.60E-10 |
| PF00642.27 | zf-CCCH | 71 | 98 | 5.60E-08 |
| PF13649.9 | Methyltransf_25 | 574 | 628 | 6.50E-08 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0046872 | metal ion binding | Molecular Function |
| GO:0008757 | S-adenosylmethionine-dependent methyltransferase activity | Molecular Function |
| GO:0140101 | catalytic activity, acting on a tRNA | Molecular Function |
| GO:0030246 | carbohydrate binding | Molecular Function |
| GO:0005524 | ATP binding | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR036855 | Zinc finger, CCCH-type superfamily |
| IPR000571 | Zinc finger, CCCH-type |
| IPR045850 | tRNA (uracil(54)-C(5))-methyltransferase, metazoa type |
| IPR029063 | S-adenosyl-L-methionine-dependent methyltransferase superfamily |
| IPR035979 | RNA-binding domain superfamily |
| IPR030390 | RNA methyltransferase TrmA, active site |
| IPR025714 | Methyltransferase domain |
| IPR010280 | (Uracil-5)-methyltransferase family |
| trEMBL term | Description |
|---|---|
| A0A0R0H2D6 | _ |
| SwissProt term | Description |
|---|---|
| C3H24_ARATH | Zinc finger CCCH domain-containing protein 24 |
| KO | Description | Enzyme |
|---|---|---|
| K15332 | tRNA (uracil-5-)-methyltransferase | [EC: 2.1.1.-] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT2G28450 | zinc finger (CCCH-type) family protein |
| Medicago sativa L. | MsG0480020808.01.T01 | _ |
| Oryza sativa L. | LOC_Os04g01480.1 | zinc finger C-x8-C-x5-C-x3-H type family protein, expressed |
| Cucumis sativus L. | Csa015195 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000494s00017408.1 | _ |
| Codonopsis lanceolata | Cl_chr06_23050T | _ |
| Arachis hypogaea L. | AH03G01500.1 | Zinc finger CCCH domain-containing protein 24 like |