Gene detail

Detail information of Am05G017730.1 Annotation

Gene ID	Annotation
Am05G017730.1	global transcription factor C

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G017730.1	mRNA	Chr05	115813798	115819417	-

Sequences

CDS:

>Am05G017730.1
ATGGCAGACCATCGAAATGGAAGTACCCAAACTGCCAATGGAAAAGCTAATGCGGCTGGATCTGCCTATTCAATTGATCTTAATGCCTTCCAAACCAGACTGAAGGCCTTTTATTCACATTGGGATGAACACAAAGCAGATCATTGGGGATCTTCTGATGCAATTGCTGTTGCATGTCCTCCACCATCAGACGATCTGCGATACCTGAAATCTACTGCACTAACCTTATGGCTGCTTGGATTTGAGTTCCCAGAGACAATATTGGTCTTCACAAAGAAGCAGATTCATATCTTGTGCAGCCAAAAGAAGGCTTCTATTCTTGAATCTGTCAAAAAACCTGCCAAAGAAGCTGTTGATGTGGAAATTGTTTTGCATGTCAAGCCTAAAAATGATGATGGAACTGCTCTTATGGATGCTATAATTCGTGCCATCCGTACTCAGTCAAAGTCTGATGGCCATGATTCTTCCACTGTGGGACACATATCAAGAGAGGAACCTGAAGGGAAATTGCTTGATACCTGGGCTGAAAAATTAAAAAGTTCTAAATTTCATCTGATTGATGTGGCAAATGGGTTTTCTTCATTGTTTGCTGCAAAAAGTAATGAAGAGCTTACATCAATCAAGAGGGCAGCATACCTAACCACCAGTGTGATGAAAAATTTTGTGGTTTCGAAGCTCGAGAATGTAATTGATGAAGAGAAGAAGATTTCTCATTCTACTCTGATGGATGAGACTGAGAAAGTCATACTGGAACCTTCGAAAGTCAACTGTAAACTGAAGGCAGATAATGTCGACATTTGTTACCCCCCAATTTTTCAGAGTGGAGGGCAATTTGACCTTAGGCCTAGTGCAGTCAGCAATGATGAGTTACTTTACTATGACTCTGCCAGTGTGATTATATGTGCTGTTGGAGCTCGGTACAAGAGCTACTGCTCAAATATAGCTAGAACCTTTTTGATTGATGCAGACCCTATTCAAAGTAAGGCTTATGAGGTTCTTCTGAAAGCCCATGAAGCTGTCATTGGTTCATTGAAGCCTGGAAACAAATTAAGTGCGGCATACCAAGCTGCAGTTTCTGTTGTGGAAAAGGATGCCCCTGAAATGATTTCCTTCTTGACAAAGTCTGCTGGGACAGGCATTGGTATTGAGTTTAGAGAGTCAGGTTTGAATCTTAATGCTAAGAATGAGCAGAGAGTTAAAGAAGGCATGGTCTTCAATGTGTCAATTGGATTTCAGAATTTGCAGAGTGAGAACAGTAAGTCTAAGAACAAGATCTTCTCTCTCTTGCTAGCTGACACAGTCATTGTCAACAAAGACAAGACAGAAGTTGTGACTTCTATGAGCTCAAAAGCTCTAAAAGATGTGGCTTATTCTTTCAATGAGGATGAGGAAGAGGAAAAGCCCACCAAAAAGGCTGATGCTGGTGGTGTTGAGCCCATGATGTCTAAGACAACTCTAAGGTCAGATAATCATGAGATTTCAAAAGAAGAACTTCGAAGGCAGCATCAGGCAGAACTTGCTCGTCAGAAAAATGAAGAAACTGCAAGGCGACTTGCTGGTGGTGGAAATGATACAGGAGACAACCGTTCATCTGGTAGGACTTCTACAGAACTGGTGGCCTACAAGAGCATAAATGACCTTCCCCCTCCGAGAGAGATGATGATTCAGATTGATCAAAAGAATGAAGCAATTCTCTTGCCTATCAATGGAAGCATGGTTCCCTTTCATGTGGCTTTCATCCGAACTGTTTCTAGTCAGTCGGACACCAACCGTAACTGCTATATCAGAATAATTTTTAATGTTCCCGGGACCCCTTTCAGTCCTCATGATGCAAACTCGATGAAATTCCCTGGTTCTATATATTTGAAGGAGGCTTCATTCCGCTCTAAGGATCCCAGGCACATAAGCGAAGTTGTGCAGTCCATTAAAACACTCAGGCGACAAGTTGTAGCAAGAGAATCTGAGAGGGCTGAGAGGGCAACCTTGGTTACTCAGGAGAAACTGCAGCTTGCTAATAACAGATTTAAGCCAATAAGATTGCCCGACCTTTGGATCCGCCCTGCTTTTGGTGGTCGCGGAAGGAAGATACCAGGTACACTTGAGGCTCATGCAAATGGATTTCGATATTCTACCACCAGATCAGATGAGCGTGTGGATATAATGTTTGCCAATATTAAACATGCATTTTTTCAGCCAGCAGAGAATGAAATGATTACCCTCCTGCACTTTCATCTGCACAACCATATTATGGTAGGAAATAAAAAGACAAAGGATGTTCAGTTTTACGTTGAGGTAATGGACATGGTCCAGAATGTTGGGGGTGGGAAGAGATCAGCCTATGATCCTGACGAGCTTGAAGAAGAACAGAGAGAGAGGGAGAGGAAGAACAAGATTAATGTTGAATTTCAAAGTTTTGTGAATCGAGTGAATGATCTCTGGGGACAACCGCAATTCAATGGCCTTGACCTTGAGTTTGATCAACCTCTTAGAGAGCTTGGCTTCCCTGGGGTACCTCATAAATCATCAGTATTTATTGTTCCTACTTCAGCCTGCCTTGTGGAACTGATAGAGACTCCTTTCCTTGTTGTCACTCTAGGTGAGATTGAGATTGTGAATCTAGAGAGAGTTGGGCTTGGGCAGAAGAACTTTGATATGACAATTGTATTTAAGGACTTTAAGAAGGATGTCCTTAGGATCGATTCTATCCCTTCTTCATCACTTGATGGTATCAAGGAGTGGCTTGATACAACAGACATCAAATATTATGAGAGCAGGCTGAATCTGAACTGGCGTCAGATCCTGAAGACAATCACAGATGACCCTCAAAGCTTCATTGAAGGTGGTGGTTGGGAATTTCTGAATTTGGAAGCTACTGATTCAGAATCTGATAACTCTGAGGAGTCAGACAAAGGTTACGAGCCATCGGATGTGGAACCTGAATCAGATTCTGAAGATGAAGATTCTGAAAGTGAATCACTTGTTGAATCTGAGGAAGATGAGGAGGAGGAAGATGAGGAGGAGGATTCAGAAGAAGAAAAGGGAAAGACATGGGAAGAACTGGAGAGGGAGGCTAGCAATGCAGATAGGGAGAAAGGAAACGAGTCTGACAGTGAAGAAGATAGGCAAAGAAGGAAGGCGAAAGCTTTTGGTAAGTCAAGAGCTGGTTTAAGTAGTAGCATGCCAAAGCGATCCAAGTTAAGATAG

Protein:

>Am05G017730.1
MADHRNGSTQTANGKANAAGSAYSIDLNAFQTRLKAFYSHWDEHKADHWGSSDAIAVACPPPSDDLRYLKSTALTLWLLGFEFPETILVFTKKQIHILCSQKKASILESVKKPAKEAVDVEIVLHVKPKNDDGTALMDAIIRAIRTQSKSDGHDSSTVGHISREEPEGKLLDTWAEKLKSSKFHLIDVANGFSSLFAAKSNEELTSIKRAAYLTTSVMKNFVVSKLENVIDEEKKISHSTLMDETEKVILEPSKVNCKLKADNVDICYPPIFQSGGQFDLRPSAVSNDELLYYDSASVIICAVGARYKSYCSNIARTFLIDADPIQSKAYEVLLKAHEAVIGSLKPGNKLSAAYQAAVSVVEKDAPEMISFLTKSAGTGIGIEFRESGLNLNAKNEQRVKEGMVFNVSIGFQNLQSENSKSKNKIFSLLLADTVIVNKDKTEVVTSMSSKALKDVAYSFNEDEEEEKPTKKADAGGVEPMMSKTTLRSDNHEISKEELRRQHQAELARQKNEETARRLAGGGNDTGDNRSSGRTSTELVAYKSINDLPPPREMMIQIDQKNEAILLPINGSMVPFHVAFIRTVSSQSDTNRNCYIRIIFNVPGTPFSPHDANSMKFPGSIYLKEASFRSKDPRHISEVVQSIKTLRRQVVARESERAERATLVTQEKLQLANNRFKPIRLPDLWIRPAFGGRGRKIPGTLEAHANGFRYSTTRSDERVDIMFANIKHAFFQPAENEMITLLHFHLHNHIMVGNKKTKDVQFYVEVMDMVQNVGGGKRSAYDPDELEEEQRERERKNKINVEFQSFVNRVNDLWGQPQFNGLDLEFDQPLRELGFPGVPHKSSVFIVPTSACLVELIETPFLVVTLGEIEIVNLERVGLGQKNFDMTIVFKDFKKDVLRIDSIPSSSLDGIKEWLDTTDIKYYESRLNLNWRQILKTITDDPQSFIEGGGWEFLNLEATDSESDNSEESDKGYEPSDVEPESDSEDEDSESESLVESEEDEEEEDEEEDSEEEKGKTWEELEREASNADREKGNESDSEEDRQRRKAKAFGKSRAGLSSSMPKRSKLR*

Promoter(3k):

>AM05G017730.1
TCTCCTAACGTCTCTGACCCAACGTATGACATCTTCACGTGTAGGAAATAACTACAAAATAGAAAATTGTTAGGTACTTAATTAATTAAATATCTACATACATGTTTTAAAAAAATAATTAATTAAATATACCGTCTCCGTCCTGAATGACCCTGATGTATCTATCTCGATCGGAGCCAATTGTGACTCCGTATCCATATCTGTTTCAGTTTTACGAGAAAAAATAAAACATAAGACATAATAATATAATTACGAAACCGATTTATCTGCTATGGATATAAATCCGTTTTGGTTTTTTTCGAAACGGATTTATGTGGTAACAGATAAATCCATTTTGGAGCAAATATAAAAACAGAAGTAAGTTTGCAAAATATAAATCCGTGGTTGAAATTTTTTTAAAAACGGAATTACATTTTTAAACGTAAATCCGTTTTGACACAATTAAATGCCATATGGAAGTAATCCTTTTGAGATACTTCCGTTTTGAGAAAAAAGTCAACTAACGGAAGTATCTTTCTCCGTTTACTTCCGTTTGGCGTCGTATTTAATGATTAACGGATTTACCTCTACTACAGGTAAATCCGTTTGCTGATATAGTGGGTCCCACTAGAGAATCTGGTCCAAATTCAATTTTGTGTAATAAATGAGAGGAGTATTTTCGGGTTTCTAAAAATTGTGGGGGTAGATGGGTAAGGGGTGGAGGTATAAAAAAATCCAAAAAAAAAAACTATAATGGACCGGACCACTATGAAATTGAAAAGCCCATACCATTTTTTTTTGAAAAATCAACCCATCCAATTTTTTTGATATAAAAACGAAATAGCGGGAAGCAATATTTCATAACTGGTTAATTACCATCGCTTCATTCAGGTTTCGTGCTATCTCAAAAAACCCTAAATCCCAAAATTCCAATGTCACCGCTTCCATTCTTCACTTAATCGCTTCCCACAATCACAACCAAGCTTTCATTTTCATCCCTAACATGAGAGTTTCGTTCGTAGCTGTTCGTTTCTAAATTCCGTTCGTTCGTTTCTGTGACAGCCTCCTTCGTTCGTCATCCAACATAAGAACTACGGTAAATCACCTTGCTTCGATAGTTCACGTTTTATTGCTTATCATTGTCGATTTTTATTTTTTTGCATTTTATCGTCGATTTTCCTGTTTTTGAATCGTACTGTTATGATATTTTTACCTGTTTATTCTTCATTTTAATCTTCTGTGCTTCCTTTGATTTTCGATTTACATGTTGGGTTCTTATGGTTTTTGCTCAAACTCGACAAAATAGGGGAGCGAACTAACTGGGAATTACTAGTGTAGTACAGTATGGTAAAATATGGGTGTGAACTAAAATCTTCCGTACTACATCATTTGCGAATACTTCCCTACACCGTTTTCTGAAAATGGGTCCAATATTGTTCTAAAATTGGGTTTTACTATAATATAATAGCTTATGAAATAATTAACTGGTAATATTCATTTATATAGGGCTCAATATGATGACATGTAATTTATTAAAGAAATAAAGGTGTCATTCAGTCTTTCAGGGGGTTTGGTAGGTTTTGTGCCCTTTTTTGATGTCTATCAATTTACAAATTTCAATTGCTTCGAGTCTTGTTTCAAGTTCAAAGTGTAATGTGGAGGCGTAGTAGGTGACTAATCTTTAAGGATTTTCTAAGGCAGTGCAGTTGTGTTTTTCTGTTTAAGATGTATCAAACATTCAAACCTCAAACCTCTACATCTTGTAGTTTTTTCTGGGTTTTGTTCCTTCCAAAACTGATAAGGTTGGATTACTTTGGTTAAGAAGAGTTATTGTTTGAAGCCAACAAAGGTTGAAGTGAAAAAAGAATACTGGTGCTATGTACTGTAGAGGCTAAGTTAAGAAGACTGGTGAAGCCTACAGAGGCTAAGTGACGGAGCTTCTGCATAGTCCTAGTTCTTTTGAGTTGAGAAGCATATTCTCATCTTAAGAAGATTCTACTGTGCAATAGTCTCTTTCCCTTATTTATCTTTTGCACAGTCCTTTCTCTGTTGAGAAACATCTGTTCATCTTAAGAAGCTTCTATTCATACTACATTTATTTCATCAAGTAGCTTCTGTTCATAAACCATTATGTCAATTTCCAGCTGTAATCGAGGGTATTAATCCTTTTTGAAGCTGAAAAACTGTGTATTGTAATTCTTAAATACATTTAGTTTTTCAAAATGTATACCGTAAACAATGTGTTTACGGTAGAATTCAGAAGCTCTATACTGTAAATAAGTGACTTACTGTAGACAATATGAAAAACTGTGTACTGTAAATTAGATATTTACTAATTTACGGAAGCCCAGAAATTTTACATACTGAAGTTAATTACGGTAGATGGCCAGATTTTTCACTCCGTAACCGATTTTTCATGAGGGAGGCCTGGTGAGTTTAAATAAGGTAAAAATTTTAAGATTTTTTTGGACTTTTCAGCCTATATAAAGCACAAGGTCTGCACACATGTTTCATTTCTACCTCTATCTCCACCAGTGTTATCAATTGGGTATGGCGGAATGTGGCAGAAAACCATAATTCTGCCATACAAACACTCCATTGCAGCCTTTGGCACCACAATTGCAGCACCCCTTCACAAATTGCCTATGGTGGTTGGAGAAAAATTTGCCATGCCATGGTGGCCATGGTTCCGCCGTTTAACAACACCGATCTCCTCAAAAGCGATATCAGTTCTTTTTCTATTTTTCAAGTGTTCTAGTACTAAAGCAATGGAAATTTGTTACTTTACTTTGAGGCTGAAATGTCTGGCGAGGAATGTGAAAATTGAAACAATATTTCACACTGTATTGTGATTACTTGATTAATAATTATTAATAGGACAAACATAATATGTAATACATTTTAATTCTTGGTAAACTAGAACATCATATTTTTACCCTTCTCTCAACCCCAACTATTTTTCTAGTCTCTTATCCATGTTTCTTTGTTTTTGAACTTTTTTCCTCAGAGAAGTAGTAGACC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF14826.9	FACT-Spt16_Nlob	25	190	7.80E-51
PF08644.14	SPT16	555	709	1.50E-50
PF00557.27	Peptidase_M24	207	437	2.20E-30
PF08512.15	Rtt106	836	922	4.50E-19

Gene family

Gene family	Subfamily
Epigenetic Regulators	GTC1

Gene Ontology

GO term	Description	Category
GO:0031491	nucleosome binding	Molecular Function
GO:0006260	DNA replication	Biological Process
GO:0006368	transcription elongation by RNA polymerase II	Biological Process
GO:0006281	DNA repair	Biological Process
GO:0004177	aminopeptidase activity	Molecular Function

InterPro

InterPro term	Description
IPR011993	PH-like domain superfamily
IPR000994	Peptidase M24
IPR013719	Histone chaperone RTT106/FACT complex subunit SPT16-like, middle domain
IPR033825	FACT complex subunit Spt16, peptidase M24-like domain
IPR029148	FACT complex subunit Spt16, N-terminal lobe domain
IPR013953	FACT complex subunit Spt16 domain
IPR040258	FACT complex subunit Spt16
IPR036005	Creatinase/aminopeptidase-like
IPR029149	Creatinase/Aminopeptidase P/Spt16, N-terminal

trEMBL

trEMBL term	Description
A0AAN9S1S7	_

SwissProt

SwissProt term	Description
SPT16_ARATH	FACT complex subunit SPT16

KEGG

KO	Description	Enzyme
K25639	FACT complex subunit SPT16

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G10710	global transcription factor C
Medicago sativa L.	MsG0380015179.01.T01	_
Oryza sativa L.	LOC_Os04g25550.1	FACT complex subunit SPT16, putative, expressed
Cucumis sativus L.	Csa000749	_
Glycyrrhiza uralensis Fisch.	Glyur000307s00023007.1	_
Codonopsis lanceolata	Cl_chr05_22080T	_
Arachis hypogaea L.	AH13G42310.1	FACT complex subunit SPT16 like

Expression pattern