Gene detail

Detail information of Am05G017560.1 Annotation

Gene ID	Annotation
Am05G017560.1	auxin response factor 4

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G017560.1	mRNA	Chr05	115351102	115356156	-

Sequences

CDS:

>Am05G017560.1
ATGGAAATTGATCTGAACCATGAAGTGAGTGAGGTTGAGAAGAATAATAATGTATTATTATGCAGTAAAGAATGTGAGGAGAAAGGTGTTTGTGTTTGTTGTGTTTCTTCTTCAACTTGTTCATCTTCTAGTTCCACTTCACCACTTGTTTCTTCTTCTTATCTTGAACTTTGGCATGCTTGTGCTGGCCCTCTCACTTCACTCCCCAAGAAAGGAAATGTGGTGGTTTATTTTCCACAAGGTCATTTAGAACAAGTTGCTTCTTTTTCTCCTTTTACACCATTGGAGATACCTACCTATGATCTTCAGCCACAGATCTTTTGTAAGGTTGTCAATGTCCAGCTACTTGCTAACAAGGAGAATGATGAGGTTTATACACAGGTCACTTTGCTTCCTCAGGCTGAGTTCGCAGGGATGCATTTGGAGGGTAAAGAAATTGAGGAATTGGAAGCAGTTGAGGAGGGAGATGGAAGGTCACCTACAAAATCAACTCCTCACATGTTCTGCAAGACACTGACAGCTTCTGATACCAGCACTCATGGGGGTTTCTCGGTTCCTCGTAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCTGCAGAGACCATCTCAAGAGCTTGTTGCAAAAGACCTGCATGGTGTGGAGTGGAAATTTCGTCATATTTATAGAGGTCAGCCAAGGAGGCATCTACTAACTACTGGTTGGAGTATTTTTGTAAGCCAAAAGAATCTTGTTTCTGGTGATGCAGTGCTCTTTTTAAGGGGTGAAAATGGAGAACTGAGATTGGGAATCAGAAGAGCTATTAGACCTACAAATGGTCTTCCTGAATCAATTGTTGGTAACCAAAACTGTTATCCCAACTTCCTTTCTTCTGTGGCAAATGCAATATCCACCAAAAGCATGTTTCATGTTTTCTATAGTCCAAGAGCAAGTCATGCAGAATTTGTTATTCCGTACCAAAAATATGTTAAGAGCATCAAGAATCCAGTGACCATTGGGACAAGATTCAAAATGAGATATGAAATGGATGAATCACCAGAAAGAAGGTGTAGTAGTGGTATGTTGATTGGAATGAGCGACTTAGATCCCTATAGATGGCCTAAATCAAAATGGAGGTGCTTTATGGTCAGATGGGATGCAGATTTTGAAACTAATCATCAAGACCGAGTATCTCCGTGGGAGATCGATCCTTCTTCTTCTATGCCTCCTCTAAGCATCCAGTCTTCGCCGAGACTGAAGAAACCACGGACAGGTCCGCAGGTTGCCTCACCCAGTCACCTCATCACTGCAGCAGGAGGCAGTGGAATGATGGGGTTTGAGGAGTCAGTAAGATCACCAAAGGTCTTGCAAGGTCAAGAAAATGCAGCTTTTATGTCACTATACTATGGATGTGACATAGCGACGAACCAGTCGGGTTTTGAGTTGAGCTCTTCAAGTCATCCGGTTATGAATGTTCACCCTTTTAGTTATGCAGGCTTTATGGAAACTAACAACAGTTTCCCAAGGGTCTTGCAAGGTCAAGAAATATGTAAACTGAATTCCCTCACAGGAAAGGTTGATTTCAACCTTGGTGCTTGGGGAACCAAACCCAATGTAACTTCCACAACTTTCAACCTCCATCAGCCAAATAAACCAAACTTCCAATCTGCATATTTTCCTTATGGGGATATTCACAAAGTTGGTCAAGCTACCATGTTAAGCTCAAAAACAACCAATTTTCAGAGGGAAAATGTCTCATTTAACACACCATCCACTCAGATAGGAAACATAAGAAGTGAAGTTGGAAGATTTGAATCTTGTCTCCCAAATGAGCATAAGCTGCAAGACAATATTTCTGTTGCTGCTTCACTAGGGGATGCTGATATAAGGATTCCGAATGATAACAATGTCAAGGGAAAAGTAAATAATGCCTGCAAACTATTCGGGTTTCCGTTGTCTGGGGAAACTAGTACTCAAAATTTACAGAACACTGCAAAAAGGAGTTGCAAAAAGGTTCACAAGCAAGGCAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGACTGAGTGGCTACAATGATCTGCTGAGTGAACTAGAGAAACTGTTTGGCATGGAAGGCCTTCTAAGAGATGCTGATAAGGGTTGGAGGATCCTCTACACTGACAGTGAGAATGACATAATGGTTGTGGGGGATGATCCATGGCATGAGTTTTGTGATGTGGTGTCCAAGATCCATATATATACCCAAGAAGAAGTGGAGAAAATGACATTAGGGATGACAAATGATGATACTCATAGCTCTTTGGAACAAGCACCACTTGTTATGGAGGCTTCAAAGTCTTCCTCAGTGGGTCAGCCTGATTATTCTCCAACAGTGGTTAGAGTCTAA

Protein:

Promoter(3k):

>AM05G017560.1
GAGGATGAATGAATTACTATTATATACTTCCTCCATCTCATATTATATGTCGTTCTAGCCTAAAAAAGTTCTTCCATATTATATGACGTTTTATAACATCAATGCATCATTAATGTTTTTTTCCTATCATACCATTTATTTAATAACATCTCTTCTTTCAATTCTACTAATTTATCTTCACAATGAATGATACTTTTGTAAAGTAACTCAAAATTTCTCTTCTCCATACAAAATTAATTATTTTTCTTAATTTGTGTGAAATGACCAAAACGTCATATAATATGAGACGGAGGGAGTATTATCATTAGCAAATTTAGGTTAAATTTCAAATGTTGCTACTCTAATTTAAAAAATTGGTGAAGACTCTCATAACCATTGAGTTTTATTGGGTATGATACCCAACATCCGATCACCTAATGATACCTAATTTTTGTATTTAATTATTTTAAAATAAATATAAATATTGTCTTAATTTTGCCCGCAATGTACCGTACCCAACAAAACTTAATGGATATGGTAGAGTTTTCTTAAAAAAATTGATTTAAGTAAATGGGAAGATATTATTGTAGGCTACAAATTATAAAGCAAATACAGTGAATCCTTTTGTTTTACCAAAAGAGAAATCAAGCCCACCCCACTTTTTCATTCAATCTATCCCCACTTTTGATGAGGACTAAACCAACTTTTTTTGAGACATGCATGTATAAGCGTAAAAAAAAAATGAAACTTGTATACTTTAGGCTTTAGCACAGGACAAACAAACCTTTAGGTGATGTCCATATCCAACTGTTTGTGTATCCATTTCTACGAATGGAAGGTACCTATACGTAATATCCTAAAAAAAAGGTACCTATATGCAATAACATCCTTTTTCACAAGTTAATGCGTTACGAAAAAGAGAGAGGTTTGCCGGTAAAATGAAATGCAGAAACAAGAGACCTTTTTTAATGGTGAAATCAAGATATTGTAAGCCATTCAACCCGGTCAATAAAATTTGAAGTCTACGTAGGCTTAATTGGGAGGTCAGAATAACCCACACTTATGGTGGTGAAGAGAATTTCATAGAGTTTCTAGGTGCGCCAAGTTTCGCCTTTTGATTTACTCGATGTTATTGGAGTCTCTACTTTTCGTTTAGTAGCTGTATAGTTTCTTTCGGGTCTCGGCCCTCTTTCTAATAAAAAAAGTTGTTAACAATAAACATGTAAAAAAATTGTTAGAATCTATATATGCAATTAACTTGGATGCTGTGAGCTTGTTCGCAGATTCATCTTTTTTAGTTTTAGCAATATGAAATATGAATTGTTTTCAATGTAATTCACCGATTTGAATAAATGAATATTCAATGAATACCTTATTTTTAGTAAAAAAAAATCTGTTAAAATCTATAACAAAAATTTAAAAAAGAAACAAATATGAAATTTTCACTTAACTTTAAAAAAACTAAAACAAAGCCCACTCTACAACAGTTACTTGCTACCAAAGCCAACAACACACACCACACTGCTCTCACACACCTATTAAATAAGCCACTGTCGCTATTGCTCTCTTTGTCGGATATTCATATAACATGCCTCCAAATCATATCCAATCACCTGAAAACCATTACTAACTTATTTATACACATTTTATGGCAGGATAAACAATGTAGGGTATGAGAGGTGCATAGAAGAGATGTAACTAGTAATGTGACTAATAAAAAGGTATAAAAAAATAAATAAAAAATCAATGAGAATTGTTCATGTGACGATACATGATGTAGTAGAAGATACGCGTGTTTTATCGTGTGCAGATCCTCTGTTGTGTATAATAACACAGTGTTGTGTCAGTGTGAATCATTACATCTAGAGAGAAAAGTGTTATTTCTGGAAATGGATCCCCTCCAGTCAGTTTTCCCAGAAGTCACAATCTCAGCCATTGAATTATGATCTGACGGTGTAGATTTAAAGTTGTATTTTATATCTGTTTTTTATAAGTTAAATCATAGCCATTTGATCTGTATCCAACGGCCAATATTTAGTGACAGCAGTGACTGGACCAGAAGTTGACTGGAGAGGATCCAGGTCCGTTATTTCTCTAGATTAGACGATCCACACTAACGCACACCTTGCTGCGTGCAATAGAGGATCTGGATTCAGTTTTATCTTATCTTAACATGAATATCTGTTATTCATGCCTTAAAATTCACCAACTTACATTGTGGGTTGAGTATTCGGATTGTGTTTCCTTTGAAATTGTCTCCTTTCATGAAATGATTTGCAAATTGAAAAACAAAGAAAAACAGACAAAGAAAACCTAGTAATCAATTGTTTGTTTGTTTATTATTTATCTTATATTATTATACATCAACTTATGTTGTCTAGAGTAGGGGCCTCTAAATATCACCCTACAAAAACAGTGAAGGAAATAATCAATAATTAATAATTAAAGAAATGCAAACTAAGGCAAAGCAGAGATGAGTGAGGGTAGGGAAGGGTGGGTACTGTACTGTCTTAGCCTGTCCCCTCCACCCAACACAACACACACAAAAACTTTCTCTCTCTATCTCTAACAAGACTCTTCTTAATAGTCTAAGTCCAAAAGCCACTACTAGGCACTATCACATTGGAATTTTTTGCCTTTTGTTATTTTGTTTCTGTGCTTCCTATGCAATTGTCTGTGTCTTCTGCTCCCTCCTCTCAGTACCTGCAAATGGAGTTGGAATCATACTTTGAATTTCTTGTTATTATTTGATATACTCTTTCTATTCTATTCACCATGAATTACTTTGTTCTTTTCTATTCATCCACTTCCACTCTTCCCCTGCCCCATCCAAACATGAATTCATTTTCTTGATTTGACCCCATTTCCATTATACCAACACAACTTCCACTTTCTGACCTTCCCTTTTTAAATCCACTTGCTGGTTTCATACTCTTTGCTAATGCTACCTTAAAACTTGTGAATTTTCTCCTCTTGTTTCTTCTTAATTCTTAGGAAACAATCACTAGGTGTTCTGTGTTC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF06507.16	Auxin_resp	294	376	8.60E-33
PF02362.24	B3	168	269	4.80E-22
PF02309.19	AUX_IAA	654	746	1.90E-09

Gene family

Gene family	Subfamily
Transcription Factors Family	B3
Transcription Factors Family	B3-ARF

Gene Ontology

GO term	Description	Category
GO:0009734	auxin-activated signaling pathway	Biological Process
GO:0005634	nucleus	Cellular Component
GO:0003677	DNA binding	Molecular Function
GO:0051537	2 iron, 2 sulfur cluster binding	Molecular Function
GO:0006355	regulation of DNA-templated transcription	Biological Process

InterPro

InterPro term	Description
IPR000270	PB1 domain
IPR015300	DNA-binding pseudobarrel domain superfamily
IPR003340	B3 DNA binding domain
IPR010525	Auxin response factor domain
IPR044835	Auxin response factor
IPR033389	AUX/IAA domain

trEMBL

trEMBL term	Description
A0A1S2YK13	_

SwissProt

SwissProt term	Description
ARFD_ARATH	Auxin response factor 4

KEGG

KO	Description	Enzyme
K14486	auxin response factor

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G60450	auxin response factor 4
Medicago sativa L.	MsG0480020825.01.T01	_
Oryza sativa L.	LOC_Os01g48060.2	auxin response factor, putative, expressed
Cucumis sativus L.	Csa020090	_
Glycyrrhiza uralensis Fisch.	Glyur000325s00013489.1	_
Codonopsis lanceolata	Cl_chr06_23540T	_
Arachis hypogaea L.	AH00G03450.1	Auxin response factor 4 like

Expression pattern