| Gene ID | Annotation |
|---|---|
| Am05G017450.1 | zinc finger (C3HC4-type RING finger) family protein |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am05G017450.1 | mRNA | Chr05 | 115122328 | 115127033 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF13456.9 | RVT_3 | 170 | 283 | 1.10E-21 |
| PF01485.24 | IBR | 365 | 443 | 4.40E-15 |
| PF01485.24 | IBR | 461 | 510 | 4.40E-15 |
| Gene family | Subfamily |
|---|---|
| Ubiquitin Family | RBR |
| GO term | Description | Category |
|---|---|---|
| GO:0003676 | nucleic acid binding | Molecular Function |
| GO:0004386 | helicase activity | Molecular Function |
| GO:0004839 | ubiquitin activating enzyme activity | Molecular Function |
| GO:0003964 | RNA-directed DNA polymerase activity | Molecular Function |
| GO:0006278 | RNA-templated DNA biosynthetic process | Biological Process |
| InterPro term | Description |
|---|---|
| IPR017907 | Zinc finger, RING-type, conserved site |
| IPR001841 | Zinc finger, RING-type |
| IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| IPR018957 | Zinc finger, C3HC4 RING-type |
| IPR044066 | TRIAD supradomain |
| IPR012337 | Ribonuclease H-like superfamily |
| IPR036397 | Ribonuclease H superfamily |
| IPR002156 | Ribonuclease H domain |
| IPR002867 | IBR domain |
| IPR031127 | E3 ubiquitin ligase RBR family |
| trEMBL term | Description |
|---|---|
| A0A371I2U3 | _ |
| SwissProt term | Description |
|---|---|
| RGSL1_ARATH | E3 ubiquitin-protein ligase RSL1 |
| KO | Description | Enzyme |
|---|---|---|
| -- | -- | -- |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G60250 | zinc finger (C3HC4-type RING finger) family protein |
| Medicago sativa L. | MsG0480020839.01.T01 | _ |
| Oryza sativa L. | LOC_Os11g01240.1 | IBR domain containing protein, expressed |
| Cucumis sativus L. | Csa017204 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur000325s00013508.1 | _ |
| Codonopsis lanceolata | Cl_chr06_23910T | _ |
| Arachis hypogaea L. | AH03G01850.1 | Uncharacterized protein like |