Gene detail

Detail information of Am05G016970.1 Annotation

Gene ID	Annotation
Am05G016970.1	myb domain protein 48

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G016970.1	mRNA	Chr05	112928483	112931231	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM05G016970.1
CAAAATAAAAGTCACCAGAGTACCCATGCCTCCGGATCTGTAACTATAATTGAGGTCCTAGTTATTGGTTGAATCTGCAATAGGTCGAAGTTGATCTACCGATCTGAACCAAACAAACACCGCAACAAGACGGGAAATTAAAAACACCACAACAATATGGGAAATCAAAAACGCCGCACCAAGACGACGAACAACAATAACGCCGCATCCTACAACCGAAAAAAACGAAATATAAATTAGATCTATGTGATAACCACTTATTTAAATGAAAAGACAAAAAAACGATATATAGAGGGGTGATTCTAGGCCAAAAATGGACCTAAAACCAACCCTTTGGTAATGATCTAGAAAGAAGAGAATAGTGAAAGGAAATTGAGAGAGACGGCTAAAGTTTACTATACCCTTTTTCTTCCACTTTTTTTATTGTACTTCAATAAATAGGTACTAGTAGTAATTTATCGGGGATCCATTTTTTATCATACACAACAAACTAAAAATAAAATGCAGAAGTAATCTTTGATATTTTTCCTACATAAAAAGGGTGAATTAATTGACAAAAAGAAAAAAAAGTGTAAGTTTATAGAGGATTTGCATTGAAACCTGACCAAAATAGGAATCTAACATTCATTATAGTGTAGATTTATTTTCCTACAGCATGCATTTGTTACTAGGCAAGGGGAAAGTCATTCATCCCCAACAGGGCCTCTTGCCACGTTGTTCAAGGCATGAGGGACTTGGATCCTCTCATTCCCACTCAGTCTACATTTCTCTCCATCCTCTCTATCTCTATCTTAAATTCACTCTCTCTCTCATCATTATTTATAATTTTTTAATCATTTTCTCTCTCCCCACTCTTGTATTTTGTGATGGAGAGAAAGAAAGGAAAAAGATGATCCAAACATAGGCATGAGGAGTCTAAATTAAAGAGGCGAAATCACCAAGTCTTGCTTGCTTTGCTGCTTTCTTCCCCCAATTCAACCACTCTCCATGTTTCATGTTCTTAACACTTCAACTTCTTGTAAAGTAACCGTGTAATAAGGGTAACTGGGCAATACTCTATTGGATACTCAAGAGTAAAGTGTTTTTTAAAAATCTGACACCAAAAGTGACAATTTTTTTTAGAATTCCCTTTATTAATTGTTACAGAAGTTATAGATTATTATAAATTATTACAATAATGAAATTTATTCTATTAAACTACAAATAAAATATTCAACAAGTACCAATGAAATGAAATATTTAACAATAGAGACTAAACATGAAAATGGAAAATTTTAAATGGATGAAAATTAGAAGAAATTTTTTATAGGGAATAAAATTCAAATTTTTGAATTTTATAGGGACAACTAACATATTTAACTCTATATTTAATGATTTTAGTTTTAATTTTTATTTTATTTATTTGTAATATTTTTCCTTCTAATTTTTTTGTTTTTAATTTGTTGACATCATACAATATTACTTATAATTTTAAAGATTTTCGACATTTTCTTTAATATTTTTTAGTTTTATATTTTGAATATATTCATGTTGTGTTTTATTTTCGACATCATTCAATTTTAGTTTTAATTTTAATATATTCATGTTGTATTTTATTTTAAAGAGAAGTGCTAGCAACACTCTATTTTAGACATTCTCTACAACACTCATTTTATGATTGGTTAAAATTTATGTAAGTTCTCACCACTTTAAAAATGAGACTCATTAATTTAGTGGAACCACATGAATTTAACCAATCATAGATAGAATGAGTGTTGGAGAGGAGTTTAAAAGAAAGTGTTGCTAAGACTTCTCTATTTTAAATGGGTTACTTAAGAACATCATACGACCATTATAAGGAATTTACCAATGAGTCATATATGGAAGGACTTTTAGAGTTTTATTTTGTTGGTAGACAAAGTGACAAACATCACTCATAAACTCACACATACAAAGTGGATGATATTCGAACTCGGATAATCATGAAAAATGTCTAGCCTAACAATATCGACTTTGCCAATCATACTAAGTTTGTACTACTTTTTTGGACTAACTCAGTCATGGAAGGTCTCTTTTTGGTTAATCCATTACTATTTTATATTCGGAAATGCTGAATCACACGAGGTATTCTTCCCCAATACCTCCCGAAAGGTGTATTTTTATTTTGATTTAAAATCTACGGCTCCTTCCTTATTGCTGCCAGAACACTAATAATACTCGCTTGGGAGGATTTTCGGGAATTTTTTTTCCGGGAGATATAGCAATACCCTTTTATATTTTGTGTCTAGCTTGTTCTATTTTATTTCTAACTAACTTGCTTACTATAAAGGGTAGCTTAATGTAAACGTCTCCCGAATAGAAAGATATTATCGAACATAAAATTAGCCTTAAAGTCCATTTCATAAAGCAATCCAATGGCTAAACAATAATGTCTCGATTAAAAGAAGCCAGTATTGCTTGCTTGCGGGTACTATTCCACTGAACAATTCCAACGTCATCAATTATCTTGAATATATAGCGCATATATCATATCAAATGATGAATGAGCATGCGTGCACCACAATACATGAACGGTGGATATGCAAACTCACTTATTATAAAAAAAAAACTCAGATTATGACCCATGACACACACCACATATAAATACACTCTCATAGTAGCCACCATATGTCCCCCACCACACAAGTGAAGAAAACAAAAACAATATAGTTACTTAGTCTGTTCAAAAAAAATGGTTGGGCAAGAATTCCGAAAAGGCCCTTGGACAGAACAAGAGGACATGAAACTGGTGTATTTTGTTGGTCTATTTGGAGATCGTAGATGGGATTTTATAGCTAAGGTTTCAGGTTTGAAGGTGGCGGGAGAGAGTAAAATATAGGTATGCTTATATGGGCATGCTTAGTTATATAAAGAAAATTCCTTTAACCACCACCTCACTTTGTTGTAGGTTTAAGTAGAACAGGTAAGAGTTGCAGATTAAGGTGGGTTAATTACCTTCACCCTGATCTCAAACGTGGCAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00249.34	Myb_DNA-binding	2	42	3.10E-13
PF13921.9	Myb_DNA-bind_6	2	50	4.00E-06

Gene family

Gene family	Subfamily
Transcription Factors Family	MYB

Gene Ontology

GO term	Description	Category
GO:0003700	DNA-binding transcription factor activity	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0001067	transcription regulatory region nucleic acid binding	Molecular Function
GO:0003690	double-stranded DNA binding	Molecular Function
GO:0010597	green leaf volatile biosynthetic process	Biological Process

InterPro

InterPro term	Description
IPR001005	SANT/Myb domain
IPR044676	MYB-like transcription factor EOBI/EOBII-like, plant
IPR017930	Myb domain
IPR009057	Homeobox-like domain superfamily

trEMBL

trEMBL term	Description
A0A896WCG0	_

SwissProt

SwissProt term	Description
MYB48_ARATH	Transcription factor MYB48

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G46130	myb domain protein 48
Medicago sativa L.	MsG0480020914.01.T01	_
Oryza sativa L.	LOC_Os11g47460.3	MYB family transcription factor, putative, expressed
Cucumis sativus L.	Csa018350	_
Glycyrrhiza uralensis Fisch.	Glyur001734s00030842.1	_
Codonopsis lanceolata	Cl_chr06_26460T	_
Arachis hypogaea L.	AH08G12350.1	Transcription factor MYB48 like

Expression pattern