Gene detail

Detail information of Am05G016930.1 Annotation

Gene ID	Annotation
Am05G016930.1	Ras-related small GTP-binding family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G016930.1	mRNA	Chr05	112768233	112774762	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM05G016930.1
TATAAGCCCGACCTTGAAGAACCCCAGATATTTTAAAGTTGGGGGCAGGCACCCTCGAAGGTATAAGCCCGCCCTTGAAGAAGGTCGCCACGAAGGTCCGACCTCAAATCCAAAACTCTCACAAAGCCCAGAAAAGCTTACAAGTCAAGATCGCTTCACAGGCGACCCGACTTGGGGGGCAACTGTTACAGATTGGGCCCAATCCTCAATAGTGAGACCCATTATCAAAAGCAAACCCATTGATCAACGGCTAAGATCTAGGCCCTAGATCGGACGGCTCTGATTCATTAGGTCAACACACCTTTATTCTATAAATAAGCATTCAATGCAATGCCAAAGGTACACACACTCTCCTATATTCTTACCTCTAATCAATTCACTTCCTGACTTGAGCGTCAGAGTGTCTTTGCAGGTACCCCCCACCTAGGATCGGAATTCCACCTAGGATCGAAACTCCATCTAGGATCAGAACTCCATCTAAGATCGGAACTCCATCCAAGATCGGAACTCCATCCAAGATAGGAACTCCATCTAGGATCGGAACTCTACAACGGAGCAAGACCTACTACTACCAAATATCTCGAATCGTCCATACCTTCTGAGATACGGTACAGAACATATACCAATCATATGCATATCCCAAATTTCCTCTGCCGTAAGAATTAATGTAGAATTGTTATAGAAAGAAAAATATAGTAGTGGATGAATGCAGGGAATCCAATTTCCTTAACAAACCGTTGCGTGAAGTAAAATGGCAGACTTCGTTCAATTATCACAAAAAAATTACTGACTTAGAGAAAAAGCATTGAGAAAAAGCAAACTATATGTACCCAATCATGATATTTCCAATGAATGATCTAAAATAGAGTAAATACACAAATTGGTCGTTGACAAATTTTTCGTGGGACGAATTCGTCCCTCACAATTTTTTTGGGACACATTGGTCCTTGATAATTTCAAAACGGGACACGTTAGTCCCCCCATCCATTTTGACGTTGCCAACGTATCCAACGTCAACGGGACTGATATGGCATGTTTATATATTTGTCAGGGACTGATATGGCCTATTTAAATTTTTGTCAGGGGTTAACGTGTCCCGTTTTGGAATTGTCAGGGACCAATGTGTGCCGAAAAAATTGTGAGTCACGAATTCATCCCACAAAAAATTTGTCAACGACCAATTTGGGCATTTACTCTCTAAAATATTATTTAATATATCGTTACAAATCATTTGATGTAATTTTTAAAACTATTATAATACGGGACACTTTTTCCCTGTCCTTTTGCCTTTTGGGGTCTTGTGCAATTTTCCTATAGTCAAGTTAAACAAATAATTAATAACATCATTTTTCTTTATACGGAGGAGAACTTGTCTTTGTTCCATCCATAGACATGAAAATTCAGTCCAAAACCAAGTCCTGGTTTCCTTAAAGTGGCAGAAATTGGGATTGGTCTTTACTCTTAAGCTAGCCATATGGTACTTGTTTCAGCAAGAATGTTTCGTATTTTTGTCCTTATTATTGACTAGGTCAAGGTTGTATTGGTCATTTTTAGGAGGATTGTTCAAAAATGTTTAACTTCACTTTCTTGCTTTTTTTTTTGGTTGGAAGATTCAATCTTTCTACGGAAAGTGAAGAAATTGCAAATTTGCAACTAGGTATGAAGTATAAGAATTATTAGCTAATTTCACTATTGGTACGAGTACCCACGATACAAGTTCTCATTACCCACACCCACTAGTTAATTGGCAGGTATTTCAATTGTCTGTTTATTTTAATGCTTAGTCTAGCCATGAATTCGCTAGACTAATCATTAATTATTAGTTTTTATTTTATTGTATGCATATATACTCATTCATTTTGTTTCATATATTTTGTTTATTTTTAATTTTGATCTATTTTCAATAGAAAAATATATTTTAATACTTTTAACGTTATTTTATCGTTGTATAATAATTACAATTTTATTCTATTAATTAATATAAATATAAATTTTTTATTTTTTCTTAGGAACCTGAGGGGAAGGGCAAAACCCGCCCTCGCTCCACCGTTGTCACCCCTAGATGGAAACTTGCTTAGAAATCGACATTGAGGGGTTTATAATACATCTTCTCCGGCTTGAATACAAACCACATTTATTCTGATTGAATTAATTCGAAAATTTTAACCAAATCATTCAAAGTATTGTTTGGATTCAACAAGTCGCTTGTGCTCAAAGAGTCGAAACGTTTCCCTACATTTGACTGACGTGTCATCTGCCCACTCTAAAATTTGTTATAAAAAACATCTTCCTACCAATTACAAACCGTATTTTTTTGGTATTAACCAGGGTATCCACCGCCGAACGCAGTGACTAATTCCCTCGTTGGATTGGAGACACCTCAAAGGGTGGGACAGCTGGCCCGGGGATTTAAAGCTGCACCATACCCAAGGCGAGGATTGAACCCTCGACACTTGGTTAAGGAAGGATGAACCCCAACCGCTTAACTAGACCCTGGGTTATTACAAACCGTATTTATTCGCACCGAATTAATTCAAAACTTTTAAAAAACTCATCCAAAGTATTATTGTTTTCATCCTCATATCGAATGACTTTTTGTTTCAAAGTCGAAGTAAATCATGCTACAAATAGCATCATAATCCCTACTTGCAGCTTCAAAGTACAATCCAGCTTGTCTCCTAGTCCTAGTGTTCTGTATTGGTCAATCCTACATTCCATTATTATTTTTTTTTTAAAAAAAACAACAACAATAATAATAATAATAATAATAATAATAATAATAATAAAGACAAAAATAAACACCGCTCTTTTCTCTCTAAAATCTCCATGTTCCTTCACTTGTGAGCTTTGGAGGAGATCCCTTTCTCTCCCATTTCCCTTTTCTGTATCTCTCTCATCATCTTTGCATTTTCTCTTTCTCTTTTCACACAGGAAAATACCCTTTCCGTGTGTGTCGCAAGAGATTCATTGATTTCTTTTCTTACAAAAAATTGAAGGTTG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00071.25	Ras	17	178	1.60E-66
PF08477.16	Roc	17	131	9.00E-35
PF00025.24	Arf	16	168	2.10E-15
PF00009.30	GTP_EFTU	49	169	4.00E-06

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0017157	regulation of exocytosis	Biological Process
GO:0005737	cytoplasm	Cellular Component
GO:0009306	protein secretion	Biological Process
GO:0098772	molecular function regulator activity	Molecular Function
GO:0004767	sphingomyelin phosphodiesterase activity	Molecular Function

InterPro

InterPro term	Description
IPR005225	Small GTP-binding protein domain
IPR001806	Small GTPase
IPR027417	P-loop containing nucleoside triphosphate hydrolase

trEMBL

trEMBL term	Description
A0A1S3TKH7	_

SwissProt

SwissProt term	Description
RAE1C_ARATH	Ras-related protein RABE1c

KEGG

KO	Description	Enzyme
K07901	Ras-related protein Rab-8A

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G59840	Ras-related small GTP-binding family protein
Medicago sativa L.	MsG0180003709.01.T01	_
Oryza sativa L.	LOC_Os07g13530.1	ras-related protein, putative, expressed
Cucumis sativus L.	Csa018349	_
Glycyrrhiza uralensis Fisch.	Glyur000123s00008454.1	_
Codonopsis lanceolata	Cl_chr06_26370T	_
Arachis hypogaea L.	AH13G04220.1	Ras-related protein RABE1c like

Expression pattern