Gene detail

Detail information of Am05G016620.1 Annotation

Gene ID	Annotation
Am05G016620.1	SCARECROW-like 14

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G016620.1	mRNA	Chr05	111731262	111733529	-

Sequences

CDS:

>Am05G016620.1
ATGGATCCAAACTTTGCTGGAGCTGGCGATTTCATAAACGGCTACAACTATGATAATCAAGAGAGCATACTATTCTCTGGTCCAAATCAGTATTCAACAAACTGGGATTTGTACCAACAATCTGGGAGCCTCCTTGATACTGATCCACCTGGTTTTGCAGAGAACATGAGCCCCGTAGAAAGTTCTGCAGCAACGGTGTCCATGCCCGTGTCAGATCCTTCCATGGAAGACACTGATTTTTCAGAAACCTTCAAGTTCATAAGCCAGATCTTAATGGAAGAGAATATTGAACAGAGGCCTTTTTATGATCCATTGAGCTTGCAAGTCACTGAGAAATCTTTCTACCATGCTCTCATAGACAAAATACCCCTTTCCCCCAAACACCCCTTATTAGATACCCATACCCTTGATGGTGGAAGTGGAACCACTAGCATCAACAACAACAGCAGCAGCAATAGCAGCATCAGCAACTTATTACATGAAAATTTTCGCGAGTCAAAACCCCCATCCCCTGATACCCCTGTTTCTGTTCTTGGTAATCATGCAGCTTTTAAGTTTAGTTCCCGTGCTATTTCCAACACTTCCTCTCAACCTCCTTCCGCTGATGGACTCATAAATTTGGATTCTTCTATTACCAGTCTGTTGGCACAAAACATTTTCAGTGATGCAGATTCTGTCTCCCAATTCAAAAGAGGTTTAGAGGAAGCCAACAAGTTTCTTCCTCCGCAACCTTACCTCCTATCCGGTCTAGAACCATCCAATTCAAACATGGTAGGACAGAATTCGTTTGGGTTGAAAGGTAGAAAGAATCGCAACCGCGAAGAAAGTGATGTCAAAGAAGAAAGGAGAAGTAACAAGCAATCAGCGCTTGGTGTTGTAGTTGATGAGGAGGACTTATCAGAAATGTTTGATAAAGTTTTACTTAATGTGGAACATTTTCCACTTTGCAATGAACATGATCGCTTGCAGAATAGACCAGTGAAGACGGAGCAGCCACCTCCATCATCTGAAGAAGGGAAAGGCCGGGTTCGTTCTAAAAAACAAGGAAGGAAGAAGGAAACAATAGATTTGAGGACACATCTGCTTCTGTGTTCACAAGCTGTGTATACCAATGACAACAGAACTGCTAATGAACTTTTGAAGCAGATTAGGCAACATTCTTCACCCTTTGGGGTTGCATCACATAGGTTAGCTCATTACTTTGCCAATGGCCTTGAGGCACGCCTTGTTGGCGATGGTACAGGTGCAGCTCAGACATTCTATTCCTGTCCTAGCTCCAAGAGGATCACTGCTGCTGAGTTCTTAAAAGCATACCAAGTTTGTCTAGCTACTATCCCCTTCAAAAAGTTTGCATATTTCTCTGCAAATAAAATGATTTACAAAGCAGCTGAGAAGGCTGAAACCCTTCATATTATTGATTTTGGTATCCTCTATGGTTTCCAATGGCCAATACTTATCAAGTTTTTATCAAATAGAGAAGGTGGACCTCCCAAGCTTAGGATCACTGGGATAGAGTTCCCCTTACCAGGGTTTCGTCCCAATGAACGAAATGAGGAGACTGGTCGTCGTTTAGCCAATTATTGCAAGCGTTTCAGTGTTCCTTTTGAGTACAACGCCATAGCATCGCGCAACTGGGAAACAATAAAAGTTGAAGACCTTAAAATTGACAGCAACGAGGTGGTTGCTGTAAACTGTATGATGAGGTTCAAAAATTTGATGGATGAGACTATTGAAGTGAAAAGTCCTAGAGATGCTGTTCTGCATTTGATCAGGAAGGTAAATCCGGATATTTTCACTCACTTCATTGTAAATGGATCTTATAATTCCCCTTTCTTTGCCTCAAGGTATAGGGAGGCACTGTTCCATTTTTCAACTATTTATGATATGTTTGACACTGTGATACCCCGCGAGAGCGAATGGAGGATGATGATTGAGAGAGAAATTGTGGGTCGGGAATCAATGAATGTTATAGCTTGTGAAGGTATTGAGAGGGTGGAAAGGCCTGAGACATATAAACAGTGGCAGGTTAGGATTACAAGGGCTGGTTTCAAGCAACTTCCATTGAATCGTGAATTAATGAACAAATTTGGGACTAAGATGAGGGAATGGTATCACAAAGATTTTGTATTTGATGAAGATAATAACTGGATGCTTCAAGGTTGGAAAGGCCGCATTTTGTATGCTTCTACTTGTTGGGTGCCTGCAGCGAACAACTCCCACTCCCACTCCCACTCCCACTCCCGCAGTCAACATAAGAACCTGCAGTAG

Protein:

Promoter(3k):

>AM05G016620.1
AGATTAGGCAACATTCTTCACCCTTTGGGGATGCATCACAAAGGTTAGCTCATTACTTTGCCAATGGTTTTGAGGCACGCCTTGTTGGTGATGGTACAGGTGCAGCACAAACATTCTATTCCTCTAAGAGAATCACTGCTGCTGAGTTCTTAAAATCTTACCAAGTACATCTATCTACTATCCCCTTCAAAAAGTTTGCATATGTCTATGCAAATAAAATGATTTACAAAGCAGCTGAGAAGGCTGAAACCCTCCATATTATTGATTTTGGTATCCTCTATGGTTTCCAATGGCCAATACTAATCAAGTTCTTATCAAATAGAGAAGGGGGACCTCCCAAGCTGAGGATCACAGGGATAGAGTTCCCCTTACCGGGGTTTCGCCCCACAGAAAGAAATGAGGAGACTGGTCGTCGTTTAGCCAATTATTGCATGCGTTTCAGTGTTCCCTTTGAGTACAATTCTATAGCATCCCGCAACTGGGAAACAATAAAAGTTGAAGACCTTAAAATTGACAGCAGTGAGGTGGTTGCTGTAAACTGTACGATGAGGTTCAAGAATTTGCTGGATGAGACTATTGAAGTGAACAATCCTAGAAATGCAGTTCTGCAATTGATCAGGAGGATAAATCCAGATATTTTCACTCATTCCATTATTAATGGATCTTATAATTCTCCTTTCTTTGCCACAAGGTATAGGGAGGCACTGTTCCATTTTTCTACTATTTATGATATGTTGGACACTGTGATACCCCGCGAGAGCGAATGGAGGATGATGATTGAGAGAGAAATGGTGGGTCGGGAAGCTATGAATGTTATAGCTTGTGAAGGTTTTGAGAGGGTGGAACGGCCCGAGACATATAAGCAGTGGCAGGTTAGGATTACAAGGGCTGGTTTCAAGCAACTTCCATTGAACCGTGAATTAATGAACAAATTTGGGACTAAGTTGAGGGAATGGTATCACAAAGATTTTGTATTTGATGAAGATAATAACTGGATGCTTCAAGGTTGGAAAGGCCGCATTTTGTATGCTTCTACTTGTTGGGTGCCTGCAGCGAACAACTCCCACTCTCGCAGTCAACATAAGAATCTGCAGCAGACTAGGGAATAGCTTTTAACACTATCTTTTACCCTTGTTAAAAGATTTGAGTTATAGTTGGACTAATACTAGGGAGTTTTTTGAGATAGTATGTTGCAAGGGTGAAGCTTGTTTTGCTCTTTAGAAGCTTATTTTTATTATTATTTGAAGTACCTTTGTGAAAGTAACATGGCGTATTCATGATTCTGTTGGCTGTTATTATTTTCTTGTTTGCCAATAATTCTTTTTATTTTTATTTGGGATAGTATTTTTGCTGTTATTTTTATTATTTTTACCCTGTGATATTGTTTTCTTGCTTGCCAATGATTCTGTTGCTCTGCTTCTATGGAGCTGGTAATGTCTTTCTTGATCACTCTGCGACTCTGCCTCTTGTTTTCATACTAGTATCCAGTAACTAGCACTTATCACTCTCTTTAGAGACCATAAGTCATTAGATCTATCTAGGAGATGAATCCTGATAATCTATTTTTTCTCACACCTAGCATTACTAATTTTGTGCAACCTATCAAGGAGAAAGGGATCTTATCAGTTAAGCTGTTATTTCTCAATACGAATGCTTGAATTTCTACAAGTGAGCCCATTGAAGTAGGAATCTTTCCTCAAAAGTTGTTGTGACCCAAGTCCAAGACCAAGTAAGCTAATGACTTGAAATGACTCCAGCAATCTGGTGTTTGTACATGTAATTGGTTATGTGAAAGGTCTAATTGGTGTAATGTTTCAACTATACCATTCTTATTTAAAAATGAAAGAGACTCTGGAAAGTTATTTTTGGATAGAGAAACATAGGTATTTATTGTTTAGTGAAGATTTGGATCCAAAACCTTCAAATTGATTTGATGGGAGAACTAGAGAATGGTAGATTTGAATTTGGAATGTTATTCTATCCAAAAATAACTTTCAAATTGATTTGATGGGAGAACTAGAGAAACAAAGGTATTTATTGTTTAGTGGAAGATTTGGATCCATACCTTCAATTTAGCCCAAAACCACTATGGAATGATATCTGATACTCGAGGTAGAAATTAGAAAGGAACATGTTAAAACAATAAAACACAAATATTCAGGATTTGAGTAATTTGCAAGAGCTCTTAAATTTAAACTTCATTTTTATTGTTCTATGAGACATGAAGATAAGTATAAGTGATATTGGATCAAAGATGAAGTCGTTCACCTTTTTTTTTTCTGATAATTGATTTGTTAAATAATAATATTTTAATGTCAATCATTTATAATTTATCAACATCTGTCTTTCATTGACCAAAAAAACACTCGTCTTGTAGAAAACTATAACACTGTCATGTAGTCATTAAAACAAAAGGAGACTTGATTCACTCGAAAAAAAGGAGAAAGAAGAAAGCTTGGCAACCAAGTAACACAAACACGTAGGTCTCCGGTAGCCTGTTACCCATCACACTGTACATTATTTTTTGACAATTAAAAAATAAAATTCATATACTAAAAGATAAGTAAAAACCTTAACTTTTAATAACAGTGACCACATTCGACTTCTCCGAAGATTCGTTGTATCCACTCCCTAATATTTGTACTTTTATATGCTTATTAGTCAATAGTCAAAGGGCTGCTTCTTTATAAAGTAACACGACTCTAGCAGAGAGGGCATCTCTCTTAAATAATTACCTTCATTATCTTCTTGATGCTGCTTCCTTCCATAACACTAACAGGATTCTTCATCTTTCTTTTTATATCTCTGTACTTCACTTGAAACCAGCAAGAGTTCATGGTCAGTTCAGTCCATATCTTATTCTATAGAAACAAAACTATATCATATTATTTCATTCTCACCGTTTCATTTCATATTTTTGATTATGCTTTGTTATTATTTTTTTCTTATTCTATAGAGATTGGTATCTCTTTCTTAACAAAGAGTGGAGGAGTGAATACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03514.17	GRAS	358	732	2.80E-110

Gene family

Gene family	Subfamily
Transcription Factors Family	GRAS

Gene Ontology

GO term	Description	Category
GO:0043565	sequence-specific DNA binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0003700	DNA-binding transcription factor activity	Molecular Function
GO:0009610	response to symbiotic fungus	Biological Process

InterPro

InterPro term	Description
IPR005202	Transcription factor GRAS

trEMBL

trEMBL term	Description
A0A1S2YJS7	_

SwissProt

SwissProt term	Description
SCL14_ARATH	Scarecrow-like protein 14

KEGG

KO	Description	Enzyme
K27753	GRAS family protein LISCL

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G07530	SCARECROW-like 14
Medicago sativa L.	MsG0480020974.01.T01	_
Oryza sativa L.	LOC_Os03g48450.4	SCARECROW, putative, expressed
Cucumis sativus L.	Csa011736	_
Glycyrrhiza uralensis Fisch.	Glyur000123s00008405.1	_
Codonopsis lanceolata	Cl_chr06_26930T	_
Arachis hypogaea L.	AH13G04690.3	Scarecrow-like protein 14 like

Expression pattern