Gene detail

Detail information of Am05G015840.1 Annotation

Gene ID	Annotation
Am05G015840.1	DNA glycosylase superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G015840.1	mRNA	Chr05	108842389	108847214	+

Sequences

CDS:

>Am05G015840.1
ATGTCTCAGAAAACACGTTGCTTTCTCTCCAATACCAAAACACCCGCACCGGCAATCGAAAGCTCCATCTCCGACTCCTCGTATGACGCTCCAGCGTCCCAACTTCGCGTTTTTGTAAGGAGAAATAAGAGAGCCAGAGGAATGACCGTAGAACTTCAATCAAAGGAGCATCCACCACCTCCAACTCAGCACCATAAAAAGTTTGGTCTGCCTGAAATAGAGGACTTTGCATATAGTGGATCAAAGAAATTGACCCAGTGTGGAAAATCAGAAGTGGGCTCAGATGTGACTCCAACTGAAGGGGAAGTTGCTTCTACGAAAGGTAGCGGTGAATCACCTGCTCACTGGGAAGAGGTGCTTGAGGGTATTCGCAAAATGAGGTGTTCTGCAGATGCACCAGTAGACACTATGGGATGTGAGAAAGCTGGTGCTACTCTGCCTCCTAAGGAAAGAAGATTTGCTGTCCTGGTATCTTCTCTTCTATCAAGCCAAACCAAAGATCATATTAATCATGGAGCAATCCAACGTCTTCTTCAAAATGGCTTGCTTACTGCTGATGCAATCAACAATGCTGATGAAGAAACCATCAAAAATTTGATTTACCCTGTTGGGTTTTATACAAGAAAAGCCACTAACTTGAAGAAAATTGCAAATATTTGTCTCATGAAGTATGGTGGAGACATACCTAGCACACTTGAACAACTACTCTTGCTTCCAGGAATAGGTCCTAAGATGGCTCATTTGGTTATGAATGTTGCATGGGACAATGTCCAAGGGATATGTGTAGATACTCATGTCCACCGCATTTGCAATCGGCTTGGGTGGGTGTCAAGATTGGGCACGCGCACAAAACAGAAAACTTTGACACCTGAAGAGACAAGAGAGGCGCTACAACGGTGGCTTCCAAAGGAAGAATGGGTTCCAATAAATCCTCTATTGGTAGGATTTGGACAGACAATTTGTACACCTCTAAGACCTCGTTGTGGAGAATGCTGTATAAGTGAGTTGTGCCCAGCAGCCTTCAAGGAAACCTCAAACTCAAGCCCATCTTCTAAGTCAACAAAATCTCGAGTGAAAAATAAGCTTTGA

Protein:

Promoter(3k):

>AM05G015840.1
TGAAACGAAGGAACCAAATTTGCAGCTTCTAGAGTGTGACCCATTCGTGCGAAACGAAGCTATGGTTGTTGGGTTTCAAGGTTTATGGAGTTGCAACAACTTCCAAATATTTTATAGACTCAAAAATGGTGAATGAAGATGATATCTAAGGTTTTATGATAGGCATGGAGAAGATGAAAGTCATCAGTGATTTAGCTTCCATGTAAGCAAATTAACAGAAAGTTGGACAAACTCCAACGACGTCAATAAAAAAACGTAACCAAGGTTAACAGTGCTAAAAATTTAAAACATAAAGGGCTGATTTGGGAAAAATAAATAAATGACCAAATCGTTAGCTGAAATTAAGTCAATGAGGAGTTTAGCCTTATTTTTGAGTTTAGCAATTTTTTGGGAGAAGGGGGGGTTTGCAAAGTTGTTTGGAATTGAAAGCGTTAAGTTCTCAATCTCACCCAATACAAAGTGGCGTCGATTTGCAGCAACATCCTCTTACGCCACCACCACCGCTTTTGTCTTTTCATCCATTTCTTCCACCGCCATTGCCACGTGTTCTTCTTCTGTTCCCTTTCAATCTGTTTATTTTTTTCACAGCAGATAATCAAAGGTTGATTTATGTGCTTAACATTTTTTCTTTTTCAATATTTTTATTGAATTGATGTTTTTGGCGTGTTCTTTCAAGGTTTTTTTTTTGACTTTTTTTGTTTTTTCTCTTAATTTCATTTTCGATCCCTCTATAATCGCTCATCCCCGATTTTAGTCCCCCAACTTATTTTCACGATTTTGATCCCCCATTTCACTAATTCTGAAATGCTCGTCCCTCCCATAATTCGTCAAACCTGTTGCTAACGTTGTCCTCACTTAACTGACGTGGCATGCCCTGCTGAATTGCCGCATGTACTTTTAAATTTTTTAAAAAAATTATGTTAAATTTGAAATACTTCATTACCTTTATCTCCTTCAACGAGACATGAACCCTAACCATATCCTCCTAATTCTATGTCTATTTTATCTATCTGTACAAGACACTATTTTTGGGTTTAGCATTTTTCTGGGAGAAAGGGTTTTTTGCGAAGTTTTATGGAATTGGAAGCGCTAAGTTCTCAATCTCACCCAGTACGAAGTGGCGTCATTTTGCACCATCATCGTCCCACACCACCACCACAGTTTCCGTTCTTTCATTTATTTCTTCCACCGCCACATGTTCTTCTTTCGTTCCTTTCAATATGTTGCTTTTTGACGATCCATTTCTTTGCTTCAGGTAAACCTTTTTTTCCTTTTCAATACTTTTATTGAATTACTTTTTTTGGCGTGTTCTTTCAAGTTTTTATACCTCTTTTTTGTTTTGTGGTTTAATTGCATTTTTACCTTCCTATAATCACTCATCCAGTATTTTAGTCCCCCAACTTTTTTTTTCCCGATTTTGATCCCCACATTTTACTAAATTCTAAAATGCCTGTCCCTCCCAAAATTGGTCAAACCTGTTACTGACACGATCCTCACTTAACTGGCGTGGCATGCCACGTTGGATTTCCACATGCGCTTTAAAATTTAAAAAATATTATTTTTTATGTTAAATTTGAAATGCTTCATCTCCTTCAACGAGACAAGAACCCTAACCGCCTCCTTAGATTCCATGTCTATCTTGCCGTGTTCTGTCAAGTTTTTATGACCCTTTTTTTTGCCGTGGTCTGTCAAGTTTTTATGACTATTTTTTTGACTTGATAAAAAATGGTCAAACCTGTTGTTGACATGGTCATCACTTAACTGACATGACATGCCACACTGGATCGCCACATGTGCTTTTAAATTAAAAAATTATTATTCTTTGTTGTCAAATTTGAAATACTTCATCTCCTTCAACGAAACAAGAACTCTAACAAGCTCCTTCCAATTACCTGTCTATCTTGTCTATTTGTACGAGACAATATATTTGAGTTTAACATTTTTTGGGAGAAAGGGGTTTTGCAACTGTGTACGTAATTGGAAACGCTAAGTTCTCAACCTCACCCAATACGAAGCGGCGTCGTTTTGCAGCATCATCCTCCCACACCACTACCACCATTGTCTTCGTTCTTTTATCCATTTATTCCACCACCACCACCACCACCGCCATGTGTTATTCTCCCGTTCCCTTTTAATCCCTCGCTTTTCTTCACAATGGATAATCAAAGGTCCATTTCTTTGCTTTAGGTAAACCCTTTTTCTTTTTCAATATTTTTTATTTTTTTGGTGTGTTCTTTCAAGTTTTTATGACTATTTTTTGTTATTTTCTTTTTGTTTAATTTATTGCCGATTGCCAGAAGAGGAAATGAAGTTTTTCAAATTTAACATAAAAAAATAATATTTTTTAATTTAAAAATACACATGGCAATCCAGCGTGACATGTGATGTCATTTAAGTGAGGGTCATGTCAGCAAACATGTTTGATCAATTTTGGGATGGCGAACATTTCAAAAATTAGTAAAGTAGGAGATGAAAATCATGAAAAAAAGTTGAGGGACTAAAAATGTGGGTAGACAATTATAGAAGGAATAAAAGTGCAATTAAGCCAAATTCATATTTTTATGGAGACTAAAAATGTATTTAAACGGTCCAAGTGATGCAGCTCAGTTGGTTCGAGCTAGCGACATATTTCTTTTTTTGAGATTAAAAATTGTGGAGGGGAACTTCACAGCCCCGGTGAGAGAGTGCGGCAATCGGTCATCTCACCTCTCCAAAAAAATACTTTTCGTGAGAATCGAACTCAGGAGCAAACTGAGTCGACCCTTACAGACCATATTTCAGTTGCTCCCAAATTCGAATCCGGCATGCGGCACTTTCATTCCCTATTTCCCCTATACGTGGCCATCGTGTCCGTCTCTTGAAAAATAAAATGTATTTAAACATTAATTTTAATTATTAATTATTTTAAAAACATTCTCACCATGCTTCTTCCAATACAACCCTCCTCAAATCAAATGTTAGTTATTTGCTTCGGGGAGAAGAAGAATCAAAGTGTTAGCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00730.28	HhH-GPD	157	284	7.80E-21
PF00633.26	HHH	223	251	3.70E-08

Gene family

Gene family	Subfamily
Epigenetic Regulators	DNG8

Gene Ontology

GO term	Description	Category
GO:0006289	nucleotide-excision repair	Biological Process
GO:0003677	DNA binding	Molecular Function
GO:0046872	metal ion binding	Molecular Function
GO:0004519	endonuclease activity	Molecular Function
GO:0016020	membrane	Cellular Component

InterPro

InterPro term	Description
IPR003265	HhH-GPD domain
IPR023170	Helix-hairpin-helix, base-excision DNA repair, C-terminal
IPR000445	Helix-hairpin-helix motif
IPR003651	Endonuclease III-like, iron-sulphur cluster loop motif
IPR004036	Endonuclease III-like, conserved site-2
IPR030841	Endonuclease III-like protein 1
IPR004035	Endonuclease III, iron-sulphur binding site
IPR011257	DNA glycosylase

trEMBL

trEMBL term	Description
A0AAN9PU87	_

SwissProt

SwissProt term	Description
NTH1_ARATH	Endonuclease III homolog 1, chloroplastic

KEGG

KO	Description	Enzyme
K10773	endonuclease III	[EC: 3.2.2.- 4.2.99.18]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G31450	DNA glycosylase superfamily protein
Medicago sativa L.	MsG0480021137.01.T01	_
Oryza sativa L.	LOC_Os11g16580.1	endonuclease III-like protein 1, putative, expressed
Cucumis sativus L.	Csa002914	_
Glycyrrhiza uralensis Fisch.	Glyur001732s00023324.1	_
Codonopsis lanceolata	Cl_chr04_05940T	_
Arachis hypogaea L.	AH03G04030.1	Endonuclease III homolog 1, chloroplastic like

Expression pattern