Gene detail

Detail information of Am05G015520.1 Annotation

Gene ID	Annotation
Am05G015520.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G015520.1	mRNA	Chr05	107959553	107969070	+

Sequences

CDS:

>Am05G015520.1
ATGGCCGTCAACGATGCTGAACAATCCCATAAGGCTCACAGAACTCGCCAATCCGGCGCCAAATCCTTCAAGAAAAAGAACAAAGGCAAGAAGTACGATGACGGAGACGAACCAAGAGCTCGAAACCCCAAGGCGTTCGCCTATTCTTCATCCAATAAAGCCAAGAAATTGCAATCCCGCACCGTCGAAAAAGAGCAGCGCCGCCTTCATGCGCCCATTATTGATCGCTCTTACGGTGAACCTCCTCCATATGTCGTCGTCGTGCAGGGTCCTCCCCAGGTTGGAAAGTCACTTTTGATTAAGTCTTTGGTTAAGCATTACACAAGGCAAAATCTCCCTGAAGTTCGAGGTCCAATTACTATTGTATCAGGAAAGCAAAGGAGGTTGCAGTTTGTGGAGTGTCCTAATGATATCAATGGCATGATAGATGCTGCAAAGTATGCTGATTTAGCACTTCTTCTTATAGATGGAAGTTATGGTTTTGAAATGGAAACCTTTGAATTTCTTAACATTTTACAAGTTCATGGATTTCCAAAGGTCATGGGAGTTCTTACTCATCTTGATGAATTCAAGGATGTTAAAAGGTTGAGGAAAACAAAACAGCGACTCAAACACAGGTTTTGGACCGAAATATATGATGGTGCTAAATTGTTTTACTTATCCGGCCTTATTCATGGAAAGTATACCAAGCGTGAAGTTCACAATCTTGCTCGTTTCATATCTGTCATGAAGTTTCATCCTTTATCTTGGCGAACTTCCCATCCGTATGTTTTGGTAGACCGTTTTGAAGATATCACTCCTCCTGAAAAAGTGCATGCAAATAATAAATGTGACAGAAAAGTCACACTTTATGGCTATCTTAGAGGTTGTAATTTGAAAAAGGGCAATAAGGTGCACATAGCTGGAGTTGGTGATTATGGTTTAGCTCATTCTACTGCTTTACCTGATCCTTGTCCTCTTCCATCTGCTGCCAAAAAAAAAGGACTGCGCGATAAGGAAAAGTTATTTTATGCTCCTATGTCTGGCATTGGGGATCTTTTGTACGACAAAGATGCGGTGTACATTAATATTAATGATCACTTTGTTCAATTTTCAAAAGCTGATGATGAAAATTCGGCTATGACGAACAAAGGAAAGGACAGGGATGTTGGGGAGGTTTTGGTGAAATCGCTTCAGAATACCAAATACTCAATCGATGAAAAGCTAGAGAATAGCTTTATCAATCTTTTTGGTCAAAAGCCAAAAGCGTCGTCAGAAGCTCTAGCAAATGTGCAGGATACAAACAATAATGTAGAAGAAAACGGTGAAGATAATAATGAAATAGATTTGGATGGTTCAGAATCATCTGATCGGAGTGAAGCTGATGCCACGACAGATAGTGAGGCCCATGGTTCTGATGATGATGGTGATGGTGATGCAGAAGATAGTAAAGCTACAAATGGAGACCACATAAAAGAACAGATTGAGTCTCACAATGGAAGACGAAGAAGAAGGGCAGTCTTCAGAAATGAAGTTGAACAAAATGATCTGATGGATTCAGAAGAAGAGGAAGAAGATGGTGGTGCCAGTGATGATGGCGACGAAGATGGTGACACAAGTGATGGTGAGACAAATAGTGCCAGTGACGATGATGGTGACACAAATGGTTCCAGTGACGATGATGGTGACACAAATGATGATGACATGGGAAATATTTCAAAATGGAAAGAGTCATTGGCAGAAAGAACTCTCTCACGGAAATCTCCTAGTTTGATGCAACTCGTGTATGGGGAATCTACTATTAATCCAACCCTTATGAACAAAGAGAATGATAGTAGCGAGGATGAGGAAAATGGTGACTTTTTTAAGCCTATAGAACAAGTGAAAAAGCAAAGTACAAGAGATGGAATAAATGATGGAATGGTTGACCCTGAAGATTGTTCCAAGTGTGCACAATTTACGAACCAGGGATTGATTGAGAAAGATAACGATGAGATCCGCAACCGTTTTGTGTCTGGAAGTTTGGCAAAAGCTTCACTCAGAAATTCACTTAAAAAAGCTAATACTGAAGAAGAAGATGATGATGTCTATGGTGATTTTGAAGATTTAGAAACAGGAGAAAAATATGAGAATTATCAGACAGATGATGCTTTTGCGACAACACCACACATGGGAGATGATCTAGAAGCTGAGAAGCGAAGGCGTATGAAACTTGCTAAACGTGCAAAATTTGATGCTCCATCTGATGAAGAGCCTGGGTCTCCAGAGGAAGATGCTGGTAATGATCGTGAAGCCAGGTTTCATCATGGTCAACCTGAAGAAAGTAACTATTTTGACAAGATGAAGGAGGAGATTGAGCTTCGAAAACAAATGAATATTGCTGAACTCAACGATCTTGATGATGATACCAGATTGGAGATAGAAGGCTTCCGAACAGGGACATACCTAAGATTGGAGGTTCACAATGTTCCCTGTGAGATGGTTGAACACTTCAATCCCTACCATCCAATATTGGTTGGAGGGGTTGGTTTAGGGGAGGAAAATGTTGGATACATGCAGGCCAGGTTAAAGCGGCATAGGTGGCACAAAAAAGTTTTGAAGACCAGAGACCCAATTATTGTTTCTGCCGGATGGAGGCGTTACCAGACAACCCCAATTTATTCCATGGAGGATCGCAATGGAAGGCAGCGTATGCTAAAATACACTCCAGAACACATGCATTGCCTTGCTATGTTTTGGGGCCCTCTTGCACCTCCCAACACTGGAATAGTTGCTGTTCAGAATTTATCAAACAATCAGGCAACATTTAGGATTACTGCAACTGCAGTTGTACTTGAGTTTAATCATGCCGCAAAGATAGTGAAGAAAATCAAATTGGTTGGTTACCCATGCAAGATATTCAAGAAGACAGCACTTATCAAGGATATGTTTACTTCAGATCTTGAAGTAGCTCGATTTGAAGGTGCGGCTATTCGAACAGTCAGTGGAATAAGGGGGCAAGTCAAGAAGGCTGCAAAAGAAGAAATAGGTAACGAACCAAAAAGGAAGGGTGGGCAAGCCAAAGAAGGAATTGCTAGGTGTACTTTTGAAGACAAAATTTTGATGAGTGACATTGTTTTCCTGCGTGCATGGACTCAAGTTGAAGTTCCTCAGTTTTATAATCCATTAACAACAGCATTACAGCCGCGTGACAAGACCTGGCAAGGAATGAGAACTGTGGCAGAATTGAGAAGAGAGCACAATCTTCCTATACCATTTAACAAAGATTCTCTTTACAAGAAAATTGAAAGGAAGCCTAGGAAGTTCAATCCATTGGTGATTCCCAAGTCTTTACAGGCAAATCTTCCCTTTAAATCAAAACCCAAGGATACACCCTCGCGAACAAGGCCATCACTTGAACAGAGAAGGCAAAAGGGTGTAGTCATGGAACCCCGCGAGCGTAAAATTCACGCGCTTGTTCAGCAGCTCCAGTTAATGAATAATGAAAAGGTTAAGAAGCGGAAGACTAAGGAAGTGAAGAAGAGAAAAGTGCTTGAAGCAGAGAGAGCAAAAGAAGAGCTGGTGTCGAAAAAGCGCCGGAGAGAGGAACGACGAGACAAATACCGGAAAGAAGACAAGCTTAATAAGAAAATTCGGAGAGCAGATGGTTGA

Protein:

>Am05G015520.1
MAVNDAEQSHKAHRTRQSGAKSFKKKNKGKKYDDGDEPRARNPKAFAYSSSNKAKKLQSRTVEKEQRRLHAPIIDRSYGEPPPYVVVVQGPPQVGKSLLIKSLVKHYTRQNLPEVRGPITIVSGKQRRLQFVECPNDINGMIDAAKYADLALLLIDGSYGFEMETFEFLNILQVHGFPKVMGVLTHLDEFKDVKRLRKTKQRLKHRFWTEIYDGAKLFYLSGLIHGKYTKREVHNLARFISVMKFHPLSWRTSHPYVLVDRFEDITPPEKVHANNKCDRKVTLYGYLRGCNLKKGNKVHIAGVGDYGLAHSTALPDPCPLPSAAKKKGLRDKEKLFYAPMSGIGDLLYDKDAVYININDHFVQFSKADDENSAMTNKGKDRDVGEVLVKSLQNTKYSIDEKLENSFINLFGQKPKASSEALANVQDTNNNVEENGEDNNEIDLDGSESSDRSEADATTDSEAHGSDDDGDGDAEDSKATNGDHIKEQIESHNGRRRRRAVFRNEVEQNDLMDSEEEEEDGGASDDGDEDGDTSDGETNSASDDDGDTNGSSDDDGDTNDDDMGNISKWKESLAERTLSRKSPSLMQLVYGESTINPTLMNKENDSSEDEENGDFFKPIEQVKKQSTRDGINDGMVDPEDCSKCAQFTNQGLIEKDNDEIRNRFVSGSLAKASLRNSLKKANTEEEDDDVYGDFEDLETGEKYENYQTDDAFATTPHMGDDLEAEKRRRMKLAKRAKFDAPSDEEPGSPEEDAGNDREARFHHGQPEESNYFDKMKEEIELRKQMNIAELNDLDDDTRLEIEGFRTGTYLRLEVHNVPCEMVEHFNPYHPILVGGVGLGEENVGYMQARLKRHRWHKKVLKTRDPIIVSAGWRRYQTTPIYSMEDRNGRQRMLKYTPEHMHCLAMFWGPLAPPNTGIVAVQNLSNNQATFRITATAVVLEFNHAAKIVKKIKLVGYPCKIFKKTALIKDMFTSDLEVARFEGAAIRTVSGIRGQVKKAAKEEIGNEPKRKGGQAKEGIARCTFEDKILMSDIVFLRAWTQVEVPQFYNPLTTALQPRDKTWQGMRTVAELRREHNLPIPFNKDSLYKKIERKPRKFNPLVIPKSLQANLPFKSKPKDTPSRTRPSLEQRRQKGVVMEPRERKIHALVQQLQLMNNEKVKKRKTKEVKKRKVLEAERAKEELVSKKRRREERRDKYRKEDKLNKKIRRADG*

Promoter(3k):

>AM05G015520.1
GCGGAGCTCCGGCGGCCGGCACGGCGGCACTCTGCAGCCGGCAGTGGTTTCGGCGGCGGCGCTCCGGCGGCCGGTGGTGGTTCCGGCGGACGGTGGCCGGTGGTGGTTCACGGTGGCCCTCCGGTGGTGGTCAATATTATTATTATTATATATATTATATTATATTATATTATATATATATATATATATATATATATATATTAAATTATATTAGTTTTTGAATGATTTTTGGTCAAAAAAATTATTTTTTGAATGAATTTTTTTTAAAAAAATTTCTGGAAAAAAATATATTTAAAAAAATGTTTTTTTTTAAAAAAAGTATTTTTATAATTATACAATGGATTTGTTCAAAAAAATTAATTATCCAATGGATTTTGATTTTGTAGTTATTGTAATCCAATGGATTTAGAAAATATAATGGATGGATCACAACCATCCACAAAATCAAACGGATGGATTCAATCCAATCCATTAATATTTTTTTTTTGTAATGGATGGATTGGATGGATTTTGTTATGGATGGACCGGATATCCGGTGGACAAATAGACCATTTTGACACCCCTACTTTTAACCTCATTACGAGCTTTACGCTGCATATTCCTTGACTCTGAGAAAGAAATAAGACAAATTTGCAGCATTACAAGTTTACGACCTATGCAATTTTTTTCTTTCTTTTCTACTTCCATGGCCATACTTGAAGCACATAGATTTTATATACAATACAATAAGAAGGCAGAATCAGATACTAACAGAATAAATACAAACCTTTAATAAGAAGGTCAGTGGTCAAATACTTCGCAACACCACAACACATACAGACTCTTCAAATCCAGTAGCTGAAAATTTCAAATAACAATTCCAGAACCTTAATCTAATCTATTTGAAAATAAAACTACCAGAAAACAAAAATGTGAGATAGCAACACAACAAAAATATAAATGAAAAAGTGTGGTCGCTACATTCAAATGAAAAAATGAAATTGAGAGAGGGGAAGAGAGGGATTGAATGAGTTACCGATGGTGAGGAGAACAGCGCCGGCGAGCGAGAAACAGAAGATGGAGGATGAGCGACGAACCATGGCGGCTAGCGACCAGACAAACAAAAGTCATGGGATGAGCGACCTGCAACCAGCGATGCTGTTTCTGATCAAGGGGACGAGCGAAAGCTGAGATGAACACACTTTTGAATTTGGGGTTTCTTTTAGGGTTTAGTTAGAAGATAGATGGAAGAGAATACGGCGTGAGATGCTGAGAGGGATGCGGGAGAGTGAAGAGATGCGAGAGAGCGATGGGGGAGAGCGAAGGGGGGAACTGAAATGGGGATTGAGAGCTAGGTAAGGTTTGAGAGGGCTGAGGGAAATGTGAGAGGGAAACTGAAAAACAATGGATCGGGAAAATTTTTAGTAATGAAACAGACTTTATGAATCGGTTGTTTAAAGAACCGATTCTGAATGTACATATTCTGAATCGGTTGTTCACTAAACCGATTCAAAATGTCTAAATGGGCACCTATCTAATCAGTTGTTTAAACAACCGATTCCTAATGTCTAAAAAAAGCTGTCACAACTTCATTTAATTACAAAAATGCCACCGCGTCCACATTTGGAATCGGTTATCCAAACAACCGATTCAAAATAGTGCTTTCTAAAGCTAATTTTGCACTAGTGCCAACACCTCCACTGCGTCACCACCACCGGCGCACCACCGCAAATACCATTGCACCACCATCCCTCCCATCTGCAAACATCATGCCTCCACCACCACCCATCAGAGCTGCTTATTTTAAGATATCGCTGTTTCCGAAAACCCAGTTTCTGGAACACCTGCTGTGGGGTACAGGATGTAGTTGCATGAGTTTGGTCGACGTCTAGAAATTAAGTTTCTGGACGAGTATTTGGAGTTACACATCCGGAAACTCAAGTAATATAGAAATGTATTTTTAAAATTATACGGAAGCTTGAGTTTCTAGATGTATAAATTAAATACATGTTCGGGAACTAAATTTCCGTAGACCGAATTGCTTTTGTCTTCTGGAAGCAACAAGAACATAGCTATTACCTTTGTCAGCAAAAAGAGTACAAGCAACGAGATGCAACAGATATGCTCGACTCAAAATTACATTGTTATAATTGTTCAACAATACAATCAACTAAAGTTTAATCAAAGTTACCATTGGATTCTAAATCAGTCAAATTACATTGGTAAAACAGTTAAAGTCGGTTTCCAAAAAATGAGTTTTCAGATGCAGAAATGACTATCACTTACAGAAATTTAGTTTCCGGACGAGTATTCCAATAACTATTAGAAACTGAACATCTATAACGGAAATTAAGTTTCTGGAAGCGTAAACCATTTATACATCTGGAAATTAAGTTTCCATAACACTTTGAAACTGAACATCCATAAAATTAGGCATACGAAAGCTAAATTTCCGGATGTGGAATAGATATACCCTTCTGAAATTTCAATTTCCGGACTTATAATCTTTTAAACAAAAACAATTCAAATACATTTCGGAAACTTAGTTTACGAATGCCTAGTTTGTCAAAAATTTGAAGATCTAACATGAATTTTAGAAGCTTAGTTTCGAGCGACGGAGCGGATGGAAGGAGGTCGGTGGGGGAGGCGACAGAGCTCCGGTGGAGGTGGGTTGGGCGAATTTGGGTTTAGGGTTTGATGGGTGTTGAAGATGATGGTTTGGTTGGGGGGAGAAAGAGATAAGTTTGGGATTAGTAAGAGTATTTTAGGTATTTGAGGGGATTTTTTTTTATTATTATTATTTTTGTATTTTTGGGTCTAATAGGTAAAATTGTGGGGTGAGGTGTATGGGCCAACATTTATATCCCTAATTTGGGCTATATAAGACGGTGGGTAAAAATATCGGGTTATCGGATATATTTTGCGGTCGATTATTTGCATTAACAGCTTACCGCCATTGCAGCTCTGAAACTGGAAGCTGATAAACCCTAAACCTCAACAGACACACCAAACACTACTTCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF04950.15	RIBIOP_C	722	1041	1.60E-85
PF08142.15	AARP2CN	232	317	7.10E-31

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Biological Process
GO:0005525	GTP binding	Molecular Function
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	Biological Process
GO:0030686	90S preribosome	Cellular Component
GO:0003924	GTPase activity	Molecular Function

InterPro

InterPro term	Description
IPR007034	Ribosome biogenesis protein BMS1/TSR1, C-terminal
IPR039761	Ribosome biogenesis protein Bms1/Tsr1
IPR037875	Ribosome biogenesis protein Bms1, N-terminal
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR030387	Bms1/Tsr1-type G domain
IPR012948	AARP2CN

trEMBL

trEMBL term	Description
A0A8B8LER9	_

SwissProt

SwissProt term	Description
BMS1_SCHPO	Ribosome biogenesis protein bms1

KEGG

KO	Description	Enzyme
K14569	ribosome biogenesis protein BMS1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G06720	P-loop containing nucleoside triphosphate hydrolases superfamily protein
Medicago sativa L.	MsG0480021164.01.T01	_
Oryza sativa L.	LOC_Os03g21530.1	AARP2CN domain containing protein, expressed
Cucumis sativus L.	Csa007490	_
Glycyrrhiza uralensis Fisch.	Glyur000065s00004319.1	_
Codonopsis lanceolata	Cl_chr05_24080T	_
Arachis hypogaea L.	AH13G06370.1	Ribosome biogenesis protein bms1 like

Expression pattern