Gene detail

Detail information of Am05G014360.1 Annotation

Gene ID	Annotation
Am05G014360.1	FtsJ-like methyltransferase family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G014360.1	mRNA	Chr05	101398621	101404314	+

Sequences

CDS:

>Am05G014360.1
ATGGGGAAGGCGAAGGCGAAAGGAAAGCATCGTTTGGACAAATACTACCACTTAGCCAAAGAGCACGGTTACAGATCCAGAGCATCATGGAAGTTAGTTCAACTAAACTCAAAGTTCAGCTTCCTGGAATCGGCACGCGCCGTCCTCGATCTCTGCGCCGCTCCCGGAGGGTGGATGCAAGTTGCAGTCCAACGTGTACCGGTTGACCACCTCGTCATCGGTGTTGACCTTGCCCCTATCGCCCCCATTCGCGGCGCCATCGCCATCCAAGAGGATATCACTAGACCTGAGTGTAAGTCACGAATTAAGAAGATCATGAATGAGCACGGTTGTCGCGCTTTCGACGTTATACTTCATGACGGTTCTCCTAATATTGGTGGTGCTTGGGCTCAAGAAGCTACTAGCCAGAACGCTCTTGTTATTGACGCCGTTAAGTTAGCCACGCAGTTTTTAGCACCTAAAGGGATTTTTGTAACTAAGATTTTTAGGTCGCAGGATTATAGCTCTGTTGTGTATTGTTTGAAGCAGTTGTTTGAGAAGGTTGAGGTGGATAAACCGGCGGCTAGTCGTTCTGAATCTGCTGAGATATATGTTTTGGGGCTAAAGTATAAGGCCCCTGCCAAGATTGATCCACGGCTTCTCGATGTCAAGCATCTATTTCAGGGATCAGCTCAACCTGATGCTAAGGTGGTGGATGTACTTAGAGATAATAAGCAAAAGAGGCACCGTGACGGGTACGAAGATGGTATCACAATGTTAAGGAAGGTGTCTTCAGCTGCAAAGTTTATTTGGTCAGATGCTCCTCTGGAGATCCTTGGTACAGTCACTTCCATAACTTTTACAGATCCAGCTGATTTACCAATCAAGGATCATGAATTAACAACAGAGGAGGTAAAATCTCTATGTGATGACTTGAGGGTTTTGGGGAAGCAGGACTTCAAGCATCTTCTAAAGTGGCGGATTCACATTAGAAAAGCTCTTTTACCTGCTCAAAAGCCTGATCCTGTTACCACAGAAGAGAAAGAAAATGAGCCTAAGGTGGATGAAGATGATAGAATACTCAATGAAATGGAGGAATTGACAAATGCAATGGACCGCAAGAAGAAGCGTGCTAAAAAGCTTTTGGCAAAAAGAAGAGCTAAGGACAAGACACGAAAAGCAACAGGAATGCAAATGGATGCAGTAGAAGATGGTTATGTTGATCATGACTTGTTTTCGCTGTCCTCTATGAAGGGTAAGAAGGATCTGACCGCTGTTGATACCACCGAATATGAAGGTGGTGATGGTGAGATGGAGGACAGTGAGAAAGAAGATACCAAAGAAGGCTCGGAGCATTCGTCCAGTGACTTAGATTCCGATGAAGAACGGAAAAGATACAATGAACACATGGAAGATTTGCTTGATCAAGCTTATGAGCGGTTTGTTATAAAAAAGGAAGGAAGTGCAAAGCAGCGCAAGCGTATTAAGAAATCCTATGATGCAGACTCCCAACTTTTAGAGGGTGATGCGGATGACATTGTTCAGTCCAAATATGATTCAGATGAAGATCAGGGTGTTCAAGAAGCAAATCCTTTGATGGTGCCACTTAATGATGGGACAGAGCCCACCCAAGAGGAGGTCATAAATACATGGTTTAGTGATCCTGTCTTTGCTGATGCTGTAGAGGCAGGAGACTTCAAAAAGTCTGATAGTGAGAATGAAATGGATACTGATGGGCCCAAGGAGAAGCTGCCTGTTGCAGAAAAGGTCAAAGTAAAGAAAACTGTTGCTTCCACAGAAATAGATCACTCTAAATCTCAAGCATCTAAGGAAATGGATTTTGAGATTGTCCCTGCACCTGGTACTGATTCAAGTTCTGATTCATCCGATGAATCAGAGGATGATGATGTTGAAACCAAAGCAGAGATATTGGCTTATGCTAAGAAGATGCTGAGGAAAAAGCAACGGGAGCGCATGCTAGATGATGCATATAATAAATACATGTTTAATGACGAGGGATTGCCCAAGTGGTTTCTAGACGAAGAAATGAAACACCGGCGACCGATAAAGCCTATAACCAAAGAGGAAGTAAATGCAATGAAAGCACAGTTTAAAGACATTGATGCTCGGCCTGCAAAGAAGGTCGCGGAGGCCAAAGCACGAAAGAAGCGTGTTGCAATGAGGAAGCTTGAGAAAGTACGTAAAAAGGCCAATGTTATATCAGATCAGGCGGACATATCTGATCATTCAAAGAAGAGGCAAATTGAACAACTATATAAAAAGGCTGTTCCAACAAGGCCTAAAAAGGAGTATGTAGTGGCGAAAAAAGGTGTCCAAGTTAGGACTGGCAAGGGAAAAGTCCTTGTTGATCGCAGAATGAAGAAGGATGCAAGGACACAAGGAATGGGTAGGGGAGGAAGAGGAGGTTCAAAGGCGAAGGGTAAGGCAGGAAAAGGAGGTCCCAAGGCTAAGGGTAAGGCAGGAAAAGGAGGTCCCAAGGGTAAGACCCCAAATGGCAAAGGATCTTCAAATGCTTCTGCGAGGAAGGGAAGAAATAAGTGA

Protein:

Promoter(3k):

>AM05G014360.1
TCAATTTGGTCTCTATTGACCATGTCATTTAATGAAGACACGTCAGATTGGACAATTAGGACGCCACGTCAGCAGTTAACTGCTAGCGTGGTGTCTGTTAAGTCAATGGACAGAAAATACCAAAAAAGGACAAAAAAGGACCAGAAATGAAAGATGAGGGGCCAAAACGAGAAAAAAAAAAGATAAAGGACCAAAATGATGCCAAAGCCAAAGATAAATGACCAAAAGTGCAATTTAGCCTTTAATTTTTTATTTTACTTTAAAACCTACTTTTCTCTTTCCTCTTTCTCACTCTTTCCACTTGTCTCTACTATCAACATAATCAAACAATCCACTACCAATTTTTTTTAATTCATTTTTTGTAAAAAATCAGTAATTACATAAAATCAATTAAATTAATATTAAATTAAGTAGTATTTACTATTTACTAAAATCTACTCAAACTACTAAACTCAATTAATTTAACCACTAACAATTGTCAAAAAAAGCGACACCGCTAGCAAAAATATCAAAATTATTTTTCTTAAAAAAATCAATAATTAAATCTCATCCACTTTTTTTTTCGTGAGCCGCACGGGAGCGCCAACGACAGCGCCAACAAGAGCGCCAACGGAAGCGCCACCGGGAGTAGCGAGAGCGCCAAAAAACAGCAAAAGCTGCCTGCTGACGCGCGCAGACAATAAAAGTTTTTTTTAAAATTTATTTTTTCTAAAAAATCAGTAATTAAATAAACTTAATAAAATTAATATTAAATTATGTAGAATTTATTATTTACTTTAATCTACTCAAAACTACTAAACCCAATTAATTTAACCACTAACCAATTGTCGAAAAAAGCGATACCACTAGCAAAAATTTCAAAATTATTTTTCCTAAAATGTTCAATAATTAAATCTCATCCAATTTTTTTTGTGAGCCGCACGAGAGCAGCAACGAGAGCATCAATGGGAGCAGCAACGAGAACGCCAACAGGAGCGCCATTATTATAAGAAGATACCGCCATTATTACATCTCATTTTCTTTTTTCCTCATTTTTACTCTATTATTAATATTATAAGATGATACCGACTTTTTTTTAAAACATTTTGCAACACAACTATTTTAATAAATTTGAAATATCGCATTTTATGGAGTTTTTCCTTTTTTTTATTACATTTTGCAACTTTTAACGTATTTATAATTTCATAGCAAATTATAACAAATACAGTATCATCCGTGGTAACTGAATGAAGAGCCAATTCTCTCAATCGATTGCACATTTGACTCAAAGTCATGGTTCCGGCTAAAAGTCATTGTTTCAGCTAAAAGTCATTGTAGAGCCCGACCCATTTTACCAGCTATACATTTGAGTCCCAAAGCTTCTTCTTATTGAGGGAGAGGTAACCCGCTAAAAGTCATTGTTTTGGCTTTAACAAGCTCACCCTTATCATCTCTAATGCATACTTCATCCGTTGCAGAATATAAGCAAATACTGGTCAACAGAAGTTGATGTATCTGGATCAAAATTTGGACCAGATACATCAGCTTCTGTTGACCAGTTTTTGCTTATATTTTGTAACGGAGTAGTATTTCAATACCATATATATTTTGCTTCTTGGTTGAATATAGCAGCATCTACATTACATTTAAACTCACCTCCATATGGTTTAGTCCATGACAACACAATATTTGTTGGTACCTCTTGCTGTGGCCTCCTCTCGGTTTCCCTTTCCTTAATTCCCATTCATCAAGATAATCCAAAGCACGAGAAACTCTTGTATATGTGTAAACGTAGCATTTAGTGCTTACAAAAATCCAATCAAAATACTAGAATTGATTATTTAAATAAATTCAATTATTATTTACAACTAATGTCGATTTAATGCGTGCCGTGTGTTTTCTTATTTAAGATATTGATAATTTTAATTTAACTAATTGTCGCATTTCTATTGGAGTTCATAATTTTAATTTACCTAGATAATTTTAATTTACCTAGATACAAGATAAAGTAAAAGTTTTACATTTTTTTACCAATAAGTAAAAGTGTTTCTAGCTACACAAATTGGAGTTCATATCAATGGGCCCTAACATCTAAACCAAGACCATCACTTTTCCCACATCCCCTCCTACTCACCACACAAACCCTTAACTCCAGATATTTCAAAAATTCCCTTAAGTAGAGGACGTGTTTACGTGTGATTCAGTTGAGGCCAACCGAATATATTCGGCTAAGGCCAACCGAACGTTATAAAAAATAACAAGGGGATGTTGTTCAGCTTTGTTCGTTCAGGGAAGGGGATCCGAAACTGTTCGGTTGACATCAACCGAACCCACTTGATACTGTTCAGTTAACATCAACCGAACACACCTGAATCTCAAAATGAATGTATTTAACCAATTTTCTAACTGATTGACTATCAATAATGAATGTATTTAACCAATCTTCTGATGAACTTTCATCCCACCTCCATAGCTTATCACATTCACTCTCTTCAATGTAAGAATCGCTTATACAAGTGTCTCTCCATTGACCACTCTTCTCATGGAAGCAATTCCATAGATCACTTAAATTGAAATATTCAACTGCTTATCTTTCCCACGGATGCCACAAACGGTTAAGATTTCTAATCTCTTTCTGTTAATGGGGTGTTCGGTAGGGGTGCCGCAAACCCTCTAAAAATTGAATAAAGGGGTGTGTGTCAAAAAATACACATTCGGTTGCCCATAATCGAATTATTTCGGTTGCCCGTAACCGAATCGGCAAAAAATACGCGTTTCATTAATGACCTTTTGGTTCGTAGGGTTAGGGGGTGTGGGGTGAGTAGGGAGTGATGCGGGAAAAACATGGCCCTAAACCAAACTAACCCCTACGGGCCGCCCATTGTTAAATTGGGTCCAATCCAAATTCGTGAACGAATACCGACCCGATAGGAAATAGGAACACGAATAAAAATCGCAGAGATTTTATTCTACTCCAGTGCCTTCACTCCGTAAACCCTAGCTAAAGCCTGTGAAGTTCGA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF07780.15	Spb1_C	602	794	4.60E-57
PF01728.22	FtsJ	24	202	2.40E-51
PF11861.11	DUF3381	237	385	1.40E-41

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0031167	rRNA methylation	Biological Process
GO:0016435	rRNA (guanine) methyltransferase activity	Molecular Function
GO:0003729	mRNA binding	Molecular Function
GO:0016491	oxidoreductase activity	Molecular Function
GO:0009807	lignan biosynthetic process	Biological Process

InterPro

InterPro term	Description
IPR029063	S-adenosyl-L-methionine-dependent methyltransferase superfamily
IPR012920	Ribosomal RNA methyltransferase, SPB1-like, C-terminal
IPR002877	Ribosomal RNA methyltransferase, FtsJ domain
IPR024576	Ribosomal RNA methyltransferase Spb1, domain of unknown function DUF3381
IPR015507	Ribosomal RNA large subunit methyltransferase E
IPR028589	AdoMet-dependent rRNA methyltransferase SPB1-like

trEMBL

trEMBL term	Description
A0A151TGB4	_

SwissProt

SwissProt term	Description
SPB1_SCHPO	AdoMet-dependent rRNA methyltransferase spb1

KEGG

KO	Description	Enzyme
K14857	AdoMet-dependent rRNA methyltransferase SPB1	[EC: 2.1.1.-]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G25730	FtsJ-like methyltransferase family protein
Medicago sativa L.	MsG0480021904.01.T01	_
Oryza sativa L.	LOC_Os05g49230.1	ribosomal RNA large subunit methyltransferase J, putative, expressed
Cucumis sativus L.	Csa019169	_
Glycyrrhiza uralensis Fisch.	Glyur001607s00029755.1	_
Codonopsis lanceolata	Cl_chr04_50720T	_
Arachis hypogaea L.	AH03G05140.1	AdoMet-dependent rRNA methyltransferase spb1 like

Expression pattern