Gene detail

Detail information of Am05G013960.1 Annotation

Gene ID	Annotation
Am05G013960.1	GTP binding protein beta 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G013960.1	mRNA	Chr05	100209930	100213408	-

Sequences

CDS:

>Am05G013960.1
ATGTCTGTTACGGAGCTGAAAGATCGTCACTTGACTGCCACTGACACCGTTAACAATCTCAAAGAGCGTTTAAAGCAGAAACGCCTTTCTTTGCTTGATACTGATATTTCTGGGTATGCAAGGTCTCAGGGTAAAACTCCTGTGAGTTTTGGACCTACCGATCTGGTTTGCTGTAGAACACTGCAGGGTCATACTGGAAAGGTGTATTCATTGGATTGGACTTCTGAAAAGAATCAGATAGTGAGTGCATCTCAAGACGGCCGATTAATAGTATGGAATGCACTAACAAGGCAAAAAATTCATGCCATAAAACTGCCTTGTTCATGGGTCATGACCTGTGCTTCCTCACCAACTGGTCAATCTGTTGCATGCGGCGGTCTCGACAGTGTTTGCTCAATTTTCAATCTTAATTCCCCCACCGACAAGGAAGGGAATCAGACGGTTTCTCGGATGCTTAGCGGACATAAGGGTTATATCTCCTCTTGTCAGTATGTTCCAGATGAAGAGAATCACTTAATTACTGGTTCTGGTGATCAGACATGTATTTTATGGGATATTACGACGGGGCTTAAAACATCTGTCTTTGGAGGCGACTTTCAGTCTGGACATACTGCAGATATACTAAGCATCTCGATTAATGGATCCAACTCAAGAATGTTTGCTTCCGGTTCGTGTGATGCAACTGCTCGATTGTGGGATACTCGTGTGGCAAGTCGAGCAGTGGGTACATTTCACGGTCATGAGGGAGATGTTAACGCAATCAAATTCTTTCCAGATGGAAATAGATTTGGAACTGGTTCTGATGATGGAACTTGTAGATTGTTTGATATTAGGACTGGGCACCAACTTCAAGTATATCACCAGCAGCATAGTGACAATGACATCCCACCGGTGACCTCTATCGCTTTCTCTGTATCGGGAAGACTTCTTTTTGCTGGATATACAAATGGAGATTGCTATGTCTGGGACACTTTATTGGCAAAGGTGGTATTGAATTTGGGATCTCTCCAAGACTCTCATGACGACAGGGTCAGCTGTCTAGGTTTGTCAGCAGATGGAAGTGCATTGTGTACAGGAAGTTGGGACACAAACTTAAAGATATGGGCATTTGGAGGGCATAGGAGAACCTGA

Protein:

Promoter(3k):

>AM05G013960.1
GCACTCAATAACTTTACCAATTAAGTACCAAATTAATTCAATTGGGTTAACATCCAAATAATTCGATTAATTATTTTGAGGATGTTACAGAAAGTGAGTGAGGTGAGAACGTGAGAGTATCTGTGAGTGAGAGAGGACGCGTAGGAACCAAAAATAAAATTAAAGCAATGGGCAGCGCTTTACCCTAAAAGCGCTGCTCATTAGGAAGCATTTTATATCAATGGGCAGCGCTCTCCCATATAAGCGCTGCTTATAAGTCAGCGAATTTTACTAATGGGCAGCGCTCAGCCCCAAGCGCTGCTTATTACTCAGCGCCTTTGATCAATGGGCAGCGCTTCCCCCTAAAAGCGCTGCTTATCACTAAGCGAATTTCACTAATGGGCAGCGCTCACCCCCAAGCGCTGCTTATCACTAAGCGCATTTCTTCAATAGGCAGCGCTCCCGCTCAAAAGCGCTGCTTATCACTATCAATGAGCAGCGCTCCCCCCAAAGCGCTGCTTAAGTGTGCGACTAATTTTACGGATTATGGCGTAGTGTTTTTTACAAGCATTGAAGGGAAAGCAAAAGCCTAATGCATTTCATATAATTGTCTGGATACATGAAGGAATATCAAAATATTAATTATTTGCTAATCCAGCATAACCCAGATGACTCCCCGTCAATTTATCCACCAACTCGGACGTTGTCCTAATCATCGTCTCAGCCCTATCCCCATCCAAGCCAAGCAGTTCATCAGGCGATACAGTAGATGAACTTCGTGATATAATGTGTTTTATTGACTCGTTTGATCATCCTAGTCTGCAACAGTCATCTGCCATCTAATGGCGCTAATGGAGGTGGATGAGATTACTATAGAGATTAGGTTTTGTTTTATTTTTATTTGGATTTAGATTTAAATTTTAACTTGATTTATCTTCTTTGTACTTACATCTTATTCTCACCGGTTCTTATTATAAGATAAATTTACAGTTTTAGGTTCATTGAATAACTGATGTATTTGGCCTATGTAAAAAAAACTATCGGGATTGGAGTTGACTGCGCAACGTGCTTCCTTCTGATATGTGTGAAGATTACAGAGATTAGACTTTCGAGTTGGGGGTTCATGACTTTCAGGTGTTGTACTTGTATAGTCATCACTACCAGCCAGCCGCTTTTACCCTTTGAGTTAGTTTGGAATGGACATTTTCTATTCAAGAACCTACTCTAGCTAGTGCCTAATCCATGGGGAAATACCCTAAAACTAAGGTAATTGATAGAATAAATGGAGAAAGAAAAGGTCCATTCCAAGAGCCTTGACATAGTGTCTCCGTTAGTAGAAATGGATTCTCTCGCGGTGGCGAACATATATGATTAATATGGGGAAATCTTCTTGTTTGTTTCTCAAGCCTTTACTTGATGTGGCATTGAAGGGACAACCTTGAAGGGACACTTGAAGCCATCTTGAAGAATAAAGGATGATGGTGACTTCAGCCCATATACTTGGTTGGATTTTGTTATTTTAATCTTAAGAGAAAATTGAGTTGTTACATTGCCTAAGCCTTCTAAAAACACTTGAGTTCATTTTAATTGTGTTAAAATAAGAGTGGGCTAAAACACAAATGCAGAAGACTCATAACAAGCTTCAAGAAGAGAGTGCATGAGAAAATAAAGGTGTGGGTTGATCCATTTGGGTAACAGACGAGAGTTATCCATGAAAGGGAGAAGGAGTGACTCTTTATTTACTTGTTGAATGTGACTTTAGGTCTCCTCTGTTGTTCTATAACAATTCTTCCACTAAGGTGCCTTAAAGAGCCACTAGGATTTTTTATTAGATGTATGTGGCATTTGCATTGACTTGTATTAAGTCAGCCAATAACTATCCTTCCTTATATATAGGGGAAGAAATTTATGAAAAAGGGAACTTGGAATTTTCAGAAAATTCCTTTTGTATTTTGTATGAAAGTGTGTCTATCTTTTGTTTCTCTAGACTTATTACTTATTCTTTCTCTCGATGAGTTAAGATTACAATGTCATCCAATTTCTTATCTTCTTCGTATTTTCGTATTTCTTCTTTGTTGCTATCTTTTATTGTTCCATTTGAGTGCACAATTTTCTTACTATATTCAACCTGAATTCACATAGATTGACGATCATCAAGTCTCTCTCATTTTAGAATAAGACGCTATAGGTGTTTAGTTTATGTTTCATGTTTGTTAGCTTTTGTTCCTTCCGTTTATGTGTAAGAAAAAGTATTGGATCAAATAAACACATTGTCACTATTAGTAAACTTCCAAGGTGTGTTTGGATGAACCAAATAGAAAATATACTATTAATGGAGGGAGTAAATTTATGATTTATTCTTAGGAGAGAAATTACATTCACTTCCCTTGACTTATGAATATGGTTAAATGACAAGACACTCCCTCTATTTTAAAATTGAACATCAATCACCTCCTTTATTTGTTGAGAAAGTTTATAACACAAACACCTCATTTATTCTTACAGATAGAGAAGATATGTATTTTTATCGCCATTGACATGACATAAACTAAATACTAGTATTAGTTTAATTTAATTTAATTTAATTAGAACGACTTTGCAGGGAAAGGATAATAACAAGGTGGTCGAGTAAGATTAGAACAAAGAAAAATGAAAAAAAAATATAAATATAGAGATGAACAAAAGTGGGCCCTGGGGTGGGAGAGAAACAACACTATCCATGCTAGCTCATCTTTTTCCGTACAATTATTATTCAGTATATACCAGCATTTGCCTACTTTCATTCTTCCACTTGCTTCTTCTTCAGCTTCTCATTGTTTTTCTTTGAGAAAGTGAAGATCACGAGAGCAACTAAACAAACCCCATCTCACAATTCACCTTCCCCGTGATTCCCATCGCTTCAATTCCACATCTTGCATTGTATTCTCCCTCACAATGCGAACCCAACATGTGCATGTCCCTTTCTTCTTCATTGAATAATACTATAAATACTATACTACCCCGTTACGAAGCTGAGCTGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00400.35	WD40	241	276	9.10E-35

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Gene Ontology

GO term	Description	Category
GO:0009723	response to ethylene	Biological Process
GO:0050832	defense response to fungus	Biological Process
GO:0030968	endoplasmic reticulum unfolded protein response	Biological Process
GO:0072593	reactive oxygen species metabolic process	Biological Process
GO:0006338	chromatin remodeling	Biological Process

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR019775	WD40 repeat, conserved site
IPR001680	WD40 repeat
IPR016346	Guanine nucleotide-binding protein, beta subunit
IPR001632	G-protein, beta subunit
IPR020472	G-protein beta WD-40 repeat

trEMBL

trEMBL term	Description
A0A445I0C9	_

SwissProt

SwissProt term	Description
GBB2_TOBAC	Guanine nucleotide-binding protein subunit beta-2

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G34460	GTP binding protein beta 1
Medicago sativa L.	MsG0380017995.01.T02	_
Oryza sativa L.	LOC_Os03g46650.1	WD domain, G-beta repeat domain containing protein, expressed
Cucumis sativus L.	Csa021287	_
Glycyrrhiza uralensis Fisch.	Glyur001117s00026953.1	_
Codonopsis lanceolata	Cl_chr04_28700T	_
Arachis hypogaea L.	AH13G07140.1	Guanine nucleotide-binding protein subunit beta-2 like

Expression pattern