Gene detail

Detail information of Am05G013700.1 Annotation

Gene ID	Annotation
Am05G013700.1	Coatomer, alpha subunit

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G013700.1	mRNA	Chr05	99011360	99016998	+

Sequences

CDS:

>Am05G013700.1
ATGTTGACTAAATTCGAGACGAAAAGTAACAGAGTGAAGGGACTGAGTTTTCACAACAAGAGACCATGGATACTTGCAAGTCTTCACAGTGGTGTGATCCAGCTATGGGATTACCGAATGGGGACACTGATTGATAGATTTGATGAGCATGATGGGCCTGTTAGAGGCGTTCATTTCCACAATTCTCAGCCTCTATTTGTTTCTGGAGGGGATGATTACAAGATTAAGGTCTGGAACTATAAGATGCATAGGTGTTTGTTCACTCTTCTAGGACACCTTGATTACATTCGTACAGTGCAATTTCATCATGAGAACCCATGGATTGTGAGTTCAAGTGATGATCAAACCATCCGTATCTGGAACTGGCAGTCACGTACCTGTATATCTGTTTTAACTGGGCACAACCATTATGTTATGTGTGCTTTCTTCCATCCAAAAGAGGATATTGTTGTGTCAGCCTCCCTGGATCAGACTGTTCGTGTTTGGGATATTAGTTCTCTCAAAAGGAAGGCTGGACCTCCTTCAGATGATATTTTGCGATTGAGTCAAATGAACACAGATCTTTTTGGTGGTGTCGATGCAGTTGTTAAGTACGTGTTGGAAGGTCATGACCGGGGTGTCAATTGGGCTCATTTTCATCCTACGCTGCCTCTCATTGTCTCATGTGCTGATGACCGACAAGTGAAACTATGGAGGATGAATGACACTAAGGCGTGGGAAGTGGATACTTTGAGAGGGCACATGAATAATGTTTCATGTGTTATGTTCCATGCCAAACAGGACATCATTGTGTCAAATTCTGAGGATAAAAGCATTCGAGTATGGGATGCAACAAAGCGTACTGGAATTCAAACGTTCCGCAGGGAGCATGATCGATTTTGGATTCTTACAACACATCCTGAAATGAATCTATTGGCAGCTGGTCATGACAGTGGTATGATAGTTTTCAAGCTGGAGAGAGAAAGACCTGCTTTCGCAGTTAGTGGGGATTCTTTGTTCTACACAAAAGACCGGTTTTTGCGTTTTTATGAATTTTCAACCCAGAGAGACACTCAAGTACTTACAATTCGGAGGCCTGGTTCTTTAAGCCTGAATCAAAGTCCAAAGACTCTTTCCTACAGTCCTACCGAAAATGCAATTCTTCTCTGTTCAGATGTGGATGGTGGGTCATATGAGTTGTATTGCATATCCAAGGATAGTACAATTAAGGACAGTTTTGGTAGGGGTGATATGCAAGATCCAAAGAAAGGTCTCGGAGGATCAGCAGTCTTTGTGGCTCGGAATAGGTTTGCTGTGCTTGAGAAAAGCAGCAACCAAGTCCTTGTAAAAAACCTGAAGAACGAGCTTGTTAAAAAGAGTCTCCTCCCAATTGCTGCTGATGCTATATTCTATGCTGGAACGGGAAACTTGTTATGTAGGTCAGAGGATAGAGTTTTTATATTTGATCTTCAACAGAGGATTATTCTTGGTGATCTTCAGACCCCTTTTATCAAGTATGTAGTCTGGTCTAATGACATGGAAAATGTTGCTTTACTCAGCAAACATGCAATTGTCATTGCCAGCAAGAAGCTGGTGCACCAATGCACCCTCCATGAGACAATCCGTGTAAAAAGTGGAGCTTGGGATGACAATGGCATTTTTATTTATACAACATTAAATCATATCAAATACTGCCTCCCCAATGGAGACAGCGGGATAATAAAAACACTGGATGTCCCTATTTATATCACAAAGGTTGTTGGAAACACCATCTTCTGCTTGGGTCGGGATGGGAAAAACAAAGCTATAACTATTGATGCTACAGAATATATCTTCAAGCTTTCCTTGTTGAAGAAAAAATACGACCATGTTATGAACATGATAAGGAACTCACAGCTTTGTGGGCAGGCTATGATTGCTTATCTACAACAGAAGGGATTTCCTGAGGTTGCCCTGCATTTTGTGAAGGATGAGAAAATTAGGTTCAATTTGGCTTTGGAGAGTGGAAACATTCAAATTGCAGTTGCATCAGCTACAGCAATAGATGAGAAAGATCACTGGTATCGATTAGGAGTTGAAGCTCTTCGTCAAGGAAATGCTGGTATAGTGGAGTATGCATACCAGAGGACCAAAAACTTTGAGAGATTATCTTTTCTTTATCTCATTAACGGTAATGTGGAGAAACTTTCAAAGATGTTGAAAATTGCTGAAGTCAAGAATGATGTGATGGGTCAGTTTCACAATGCCTTATATATGGGTGATGTCCGAGAGCGTGTCAAGATATTGGAGAATGTGGGCCATTTGCCTCTGGCTTATGTCACTGCATCAGTCCACGGGCTACATGATGTTGCTGAAAGGCTTGCAGCTGAACTGGGGGATAATGTTCCATCTTTGCCTGAGAGAAAAGTGCCATCTCTCTTGATGCCACCATCACCTGTACTCTGTGGTGGAGATTGGCCCCTTCTTAGGGTCATGCGAGGCATATTTGATGGTGGGTTTAGCAATACAGATCGAGATGCCGACGATGAAGAGTATGAAGCCGCTGAAGGTGATTGGGTTGAGGAGCTTGACATGGTTGATGTTGATGGGTTACAAAATGGAGATGTTGCCGCAATTTTGGATGATGGCGAGGTTGGTGAAGAGGGTGATGAAGAGGGTGGGTGGGAGCTGGAAGATTTAGAGCTTCCCCCTGAAGCCGACACTCCAAAAGCTTCTGTCAGTTCACGGTCTTCAGTTTTTGTGGCCCCAACACCTGGAATGGCAGTTAGCCAGATATGGATTCAGAGGTCATCTCTTGCAGCTGATCATGCAGCTGCTGGAAATTTTGATACCGCAATGAGATTACTGAACAGGCAACTTGGGATAAAAAACTTTGCCCCTTTGAGATCCATGTTCCTAGATCTTCATTCTGCCAGCCATTCTTATTTGCGTGCCTTTTCATCTGCCCCAGTTGTACCACTTGCTGTTGAAAGGGGTTGGTCAGATTCATCTAGTCCAAATGTGAGAGGCCCACCGGCACTTCCTTTCAAATTGCCTCAAATAGATGAAAAGCTCAAAGCTGGTTATAAGTCAACAACTGCTGGGAAATTTACTGATGCTCTTCGCACATTCGTCAATATTCTTCATACAATTCCTTTGATTGTCGTTGAGTCAAGGAGGGAAGTGGATGAGATAAAGGAGTTGATAATCATAGTCAAAGAGTACGTTTTGGGTCTGCAGATGGAGCTGAAAAGAAGGGAAATTAAGGACAATCCAGCACGCCAGCAGGAGCTTGCAGCTTACTTCACCCACTGCAATCTCCAGCCACCTCACTTGAGGCTAGCTTTGCTGAATGCAATGACTGTCTGCTACAAGGCAAAGAACCTTGCCACAGCTGCTAACTTCGCCAGAAGGCTACTTGAGACTAATCCTAGCATTGAAAACCAAGCTAAGACAGCAAGGCAAGTGCTGGCAGCTGCAGAAAGGAATATGACTGATGCCACGGAGTTGAACTATGATTTCCGAAACCCATTTGTGATTTGTGGGGCAACCTATGTGCCCATTTATCGTGGACAGAAGGATGCCTCTTGCCCATATTGTACTTCCCGTTTTGTACCAAGCCAGGAAGAACAGATATGCGCCGTGTGTGAACTTTCAGTGGTCGGGGCAGATGCTTCTGGATTGCTCTGTTCTCCTTCCCAGATTCGTTGA

Protein:

>Am05G013700.1
MLTKFETKSNRVKGLSFHNKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFHNSQPLFVSGGDDYKIKVWNYKMHRCLFTLLGHLDYIRTVQFHHENPWIVSSSDDQTIRIWNWQSRTCISVLTGHNHYVMCAFFHPKEDIVVSASLDQTVRVWDISSLKRKAGPPSDDILRLSQMNTDLFGGVDAVVKYVLEGHDRGVNWAHFHPTLPLIVSCADDRQVKLWRMNDTKAWEVDTLRGHMNNVSCVMFHAKQDIIVSNSEDKSIRVWDATKRTGIQTFRREHDRFWILTTHPEMNLLAAGHDSGMIVFKLERERPAFAVSGDSLFYTKDRFLRFYEFSTQRDTQVLTIRRPGSLSLNQSPKTLSYSPTENAILLCSDVDGGSYELYCISKDSTIKDSFGRGDMQDPKKGLGGSAVFVARNRFAVLEKSSNQVLVKNLKNELVKKSLLPIAADAIFYAGTGNLLCRSEDRVFIFDLQQRIILGDLQTPFIKYVVWSNDMENVALLSKHAIVIASKKLVHQCTLHETIRVKSGAWDDNGIFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITKVVGNTIFCLGRDGKNKAITIDATEYIFKLSLLKKKYDHVMNMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDEKIRFNLALESGNIQIAVASATAIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLINGNVEKLSKMLKIAEVKNDVMGQFHNALYMGDVRERVKILENVGHLPLAYVTASVHGLHDVAERLAAELGDNVPSLPERKVPSLLMPPSPVLCGGDWPLLRVMRGIFDGGFSNTDRDADDEEYEAAEGDWVEELDMVDVDGLQNGDVAAILDDGEVGEEGDEEGGWELEDLELPPEADTPKASVSSRSSVFVAPTPGMAVSQIWIQRSSLAADHAAAGNFDTAMRLLNRQLGIKNFAPLRSMFLDLHSASHSYLRAFSSAPVVPLAVERGWSDSSSPNVRGPPALPFKLPQIDEKLKAGYKSTTAGKFTDALRTFVNILHTIPLIVVESRREVDEIKELIIIVKEYVLGLQMELKRREIKDNPARQQELAAYFTHCNLQPPHLRLALLNAMTVCYKAKNLATAANFARRLLETNPSIENQAKTARQVLAAAERNMTDATELNYDFRNPFVICGATYVPIYRGQKDASCPYCTSRFVPSQEEQICAVCELSVVGADASGLLCSPSQIR*

Promoter(3k):

>AM05G013700.1
ATGGGATCTTCCAACTCCATTATTTGCAAAGTAAAATCATAAGCTACATTAGGCATAACTGCAAGAAGTAGGCAAACAAAAAAGTAATATGAGCACGACAATCATTATAAATATTTGGCAAATTTATTTGAGCATGACAATCATTGGAAATATTTGGTAAAACCTTCAGGTGAAATATGTGTTTGACTACAGAGTCAACCAAGTGAAATATGTATTCACCTTGCAGCAGCATATGAATCTTTAAATTGATAGAATATTAGATCAAAATTAATGGAATATTAATGCATTACTCCAGTGAATACTCCAACAATTAAGCAAAACAAAATATTGGACAACATTAAGCTAAAATTTTGAATTTAAACATGACCTTTATGATGCAAGTTCATATAAAAGACCATCGGAGATCTTCAGGTAAATAGGAGAAATCTATCAATGAAAGTAGGGACCCTGGAAACAATCTATTCAATCAAATGAGGAGTACTATGCAAAGCATGTAGAAGAAACGAACCTCCAATGTTGGTTAGGCCCTTAAGAACTTCTAGTGCATAACTAACGTTATAGAATTCCTCCCCACCAGAACTCATCTCCGCTACCGACTGCGAAGCGAACACCTCCAGGACACCATTCACAGTTTTCGAAAAATGCTTTCATAAAAATTCATATAACCCCTTTATAAAGTCTCAACTTGGGTGAATCATATACCTGCCAGACAGCAAATTCCAAAAATCAAACTGAAAACAGATTTGAATCAAAGATTACATATATCACTGTGCCAGACATTGATGAAACATACTTCCATTGTCCAATCCAATATTCTAAAGCTTTTAGCAGAAAAAAGATATTTCTAACAATAATTTATAAGGCCTTCATAGCATTCTCAGTAATTATGTAACAATCAAACTTCCTTCTTAGTTTGATGTCAGCAACATTTAATTCAACCATAGATAAGAAAAAACAATAAAGTGAGCAATTCAAAGATGTCAAGTCATGAATTAACAGGTTATACAGAACTACTACCAAAGCCAGAAAAATAGGAAGCATTACCTGTGAGATTTTCTTGGAGTCATTTTGAGTTCTTGGGTCTTATGTGGTTGTCCAACCACCACGAATACATTCTCCTAGAATTTTCATGAGGCAGAGTCGTCGCCATCACTCCAGTACTTAGTATTCTGAAACTTAATCCTGTAAAAAAGAACAAAAAATACCTAATCGATTGGACTTGAACCTCAAATTCCAAAATTGAATGAACAAAAACCATCAGAACGACACATGTGATCCTCTTACTTGAACATTCCATGTTAAAAAAAATCTCGATTGTATATAGTATAGATTTAGGGATACAATGAAGCTTATATGGCCTACGAGAATAACTAACTTCTAGTTTGGAAAGTTCAAAAAGAAATGCTGAAAATGCGGCGAAAAGAATTTGAATCACCAAAATACGGTGACTAAAAGAATATGAACCGACTAAAAGAATATGAACTAATTGTCAAAAAAAAAAGAATATGAACTGCTGTCTCACCTTTATGCTTCAATTATTCAAAATATCAAAAATCTCCTTTGTTGAGAGTTGAGACCGGTTCGTTAAGCTAGTTCATACTCTCTACGAAGGTAATGTATGTGCGGATTTGCTGGCCAAGGTTGGCGCCTCTATGGATCAACGGTGGATCGTGTTTGATTCTCCCCCTTTTGGCATCTCGTCTCTGTTGCTTGCAAATGCTAGCGGAGTCTAGTTCGTGAGATTCTAGTTTTTTTCTTCTTTTCCCTTTGTTTGTCCTTTTTGTACCAAAGAAAAATTAGGATACACAGACGGTGTGTATTAATATTTTTAACGTCAATCAATCATAAATTATTACTTCTTAAAAATGTTTGACTTTTATTTAATTCATTTTGAATGTCACAACCCATCATAATTTCTTATTAGTTGATAGTGTGCAACTAAACTCTAATACGCAAGACCTACGTCAATTAGTAAATACTGAAATTGTTAGGCTAGATATCATCACTCGAATTAAAATTTGAGACCTAGTAATTGTATGTGTGAGTTTTACGTGACACTTGCAACTCACTCTACTCTACCAAAAACCTTTAATAGTTTCTTTTAATTACTCTTTTTTATTTTTAATTAATGTATGTTTCCAAAAATACTTTTTGTTTGCAAAAACTTACCGAAGGGGCTAGAGAAAGACGGGGGTTGGCACCATTGCACTAACCATCGCATCGAGCAAAGTATAAACATTTCTTACTTTCCTTTCCATCACCACTACGCTACTATTCATTTATACAATTTATTTACACTCTATTCTTTCTCTCTTGAGAAATGAGAAATAAACACACAACATAACCAATGACAACCAATGACAGTCCGGTTCGATCCACGCTTTGGATATACGCATCGTAAAAATTCTGGATTAAATGTCCTTCGAGACACACAATGAGCAAGAGATTAGTCATCATTATCCGTGCGGTGAATACGTGGGTTTAAAAAAAAAACATAACCATAGCCGGATCTCATATGAATATATAGAGAACTGAATATTCATTCACGCTCTCTTCTCTCTACATATGCATATATCACCACACCTCTGTCGGTGAACTTGATCGTAGATGCGTTTAACTGCCTCTTGTTGATCTCATTATCATAATCAGATCTGAGGTAAATTCTCTCTATTCCCAATCCCTCCTCGCGTTCTCATACGGTGAGATTCAATTCTTCTTTCAAATTAATCAGAATCTGCGTGAATAATGTCGAGAGCAATGTTGATTGTTATGTCTTCCTCATGTCTGAAATTCCGTGTTTTGTGATTTCGTGTTACTTTCTGAGGTGCTTCTGGTTCATCACTTTGATGCAAAAGAACCTTTTTCTTTTCTCTCTCTGTGTGTGTTTTGGCACGTAATTCTCGTGATTTAAATAGGAACTTATTGTTGAGCTATTAGAAATGAGAATTTGTGATGATTTTGATTGGATCGTGCAGAGGGAGAGGTTGTGATTGAAGGAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF06957.14	COPI_C	819	1222	7.10E-168
PF04053.17	Coatomer_WDAD	341	772	6.30E-127
PF00400.35	WD40	84	121	1.00E-36
PF00400.35	WD40	126	163	1.00E-36

Gene family

Gene family	Subfamily
Ubiquitin Family	DWD

Gene Ontology

GO term	Description	Category
GO:0006890	retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum	Biological Process
GO:0016740	transferase activity	Molecular Function
GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	Biological Process
GO:0006886	intracellular protein transport	Biological Process
GO:0000139	Golgi membrane	Cellular Component

InterPro

InterPro term	Description
IPR036322	WD40-repeat-containing domain superfamily
IPR015943	WD40/YVTN repeat-like-containing domain superfamily
IPR019775	WD40 repeat, conserved site
IPR001680	WD40 repeat
IPR020472	G-protein beta WD-40 repeat
IPR011048	Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily
IPR006692	Coatomer, WD associated region
IPR010714	Coatomer, alpha subunit, C-terminal
IPR047312	Coatomer subunit alpha, WD Associated Region
IPR016391	Coatomer subunit alpha

trEMBL

trEMBL term	Description
A0A1S2YNG9	_

SwissProt

SwissProt term	Description
COPA2_ARATH	Coatomer subunit alpha-2

KEGG

KO	Description	Enzyme
K05236	coatomer subunit alpha

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT2G21390	Coatomer, alpha subunit
Medicago sativa L.	MsG0480021300.01.T01	_
Oryza sativa L.	LOC_Os03g50340.1	coatomer alpha subunit, putative, expressed
Cucumis sativus L.	Csa018733	_
Glycyrrhiza uralensis Fisch.	Glyur000017s00002396.1	_
Codonopsis lanceolata	Cl_chr02_28300T	_
Arachis hypogaea L.	AH08G19940.1	Coatomer subunit alpha-1 like

Expression pattern