Gene detail

Detail information of Am05G013130.1 Annotation

Gene ID	Annotation
Am05G013130.1	Pentatricopeptide repeat (PPR) superfamily protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G013130.1	mRNA	Chr05	97567814	97588340	+

Sequences

CDS:

>Am05G013130.1
ATGGAACTTAACTTCTGCTACCATCGCTCTCTCAAATTAACTTCTCCTCTTTCTCTTTCCACTCACCGCACACACTTCCTCGGCTGCGTCCACACTCTTAGACCACCTTCAACTGTATCTCCACAACTTCGGAATCGAAACAAACGCAGTAGATTAGGGCTTCTTCCTCTCCGTTCCTCGCGCTTCGTCTTCAAGGCTTCATTCCAATCTCATCCACTCATCGTCGTCGTTGTCGTAGTTACTTTATCTGCTGTTTCTTTGCTCCACTTCACTCGAAACAAGAAAAAGAAGACTCTTAACCAGACACAAGGACATGCAAAATTTGCATTATCACCACAAGGAAGTAATGTTGGGAGCCAGGTCATTGATAGCCAGATTCTTGGTTTTCCAGAATTTCAAAGGGATAGACCACTGAACGAAATTGGGAAGTTAAATGATCATAAAGGGGAGGACAGACTTGTTTTTGAGGACCAAGAGATCCCACTTCAATTTTTGAAATCTTCTATGGTGCAGGAAGCGGCGTTAAAGACTAAGACATCAGATTCATCTTTCTCTGTTTTTGACTCCAGTGTCAATAATAACAGTTCTGAGGTATTAAATGAGTCTTTTTTATCTGCTGCTTTTCAAACAAGTTCGTTAGAGCCTCTAGCTTTTGCTGAGGAAATGATTTTACAAGTGGAAGAAAATCAAGATGAAGTTGACTCTGATCCCGAGTTACCTTTGAATATGGTTGAATCTGAGCTTAATGCTTCGCTTGTTGGTGTAAATGACGCACATGCTACAATCAATGGACATACTAAAGAAAAAATCGAACCTGTTATCAGCAATGATGTCCTTTTTGGTAAATCAGTTAGGGAAGGGCTGTACATGTTTTATGAGGATAACAAGTCTGTAACAGGATCCATGACACCCCTGAGTAGTGTAAAGTCATTTTCTCCTCGTGCTTCTTTTACGAATAGAAAGGGATTCCCATCAGCAACAGGAAACACCACGCTGAAAGGATTAGGATTATCTACAGATATTTCTCTACAAAGTGCAGAATATGTTGAAGGAGGAGTTAATATTTCCAGTCATAAAGAAGGCTACTCTCTGCAACATTTCAGTAAAAACTTGAGGAAAGCTAGCAGATATCCAAGAGACGGGGAAAGGAACTATATGGATCGTGATAGCAACAAAGAGGTTTTGCCCCAAAGTGCCCACCGAATCAGGGCGCATGTTGATCAGAAAAATGATCAAATCAGGGTCCATGATGGTCAGACAATTGATCCTTCAGAGCATCTAAGCAAATATAATAACTTGCTAAAAGCTGGGAGGTTACATGAATGTGTCGAATTGCTTAAAGATATGGAAACCAAAGGTTTATTAGATATGACCAAGGTTTATCATGCCAAGTTTTTCAACATTTGCAAGAAACAAAAAGCTGTTAAAGAAGCTTTTGATTACATTAGGCTTATTCCAAATCCAACGCTGAGTACATTTAATATGCTTATGTCGGTGTGTACAACCTCCCAAGACTCAGAAGGGGCTTTCCAAGTTATGCAGCTTCTTAAGGATGCTCGACTAGGACCTGATTGCAAACTTTATACCACTTTGATATCAACTTGTGCCAAGAGTGGAAAAGTTGATCTAATGTTTGAAGTGTTTCATAAGATGGTTAGTTCTGGAGTGGAACCTAATGTTAATACCTATGGGGCACTTATTGATGGTTGTGGTAGAGCTGGGCAAGTAGGTAAAGCATTTGGTGCTTACGGGATAATGAGGTCAAAGAACGTGAAGCCAGACCGTGTTGTTTTCAATGCACTTATAGCTGCATGTGCGCAGTCAGGAGCAGTGACTCGTGCTTTTGATGTGGTAGCAGAAATGGAAGCTGAATTACAGCCTATTGAGCCAGATCACATAACAATTGGTACATTGATGAAGGCATGTGCAAGTGCTGGTCAGGTTGAACGAGCAAAGCATGTGTATAAGATGATACAACAACATAACATAAAGGGATCTTCAGAAGTTTATACTATTGCAATTAATTCTTGTAGTCAAACTGGAGATTGGGAATTTGCACGGAGTGTATACAATGACATGACACAGAAAAGAGTGCTCCCTGATGAAATGGTTCTGAGTGCATTAATAGATGTTGCCGGACATGCTAATAAGCTGGATGCTGCCTTTGACATACTACAAGAAGCCCGTAAAGGAGGAATGCAGATTGGAAAAATGGCATATAGCTCATTGATGGGCGCCTGTAGCAAGACAAGAAATTGGCAAAAAGCATTGGAGCTATACGAATATCTTAAATCTCTGAAATTGGTGCAAACAGTGTCAGCTGTTAATGCTTTACTCACTGCACTTTGTGATGGGGATCAATTTCAGAAGGCTTTGGAGGTTTTATCTGAAATGAAAGAACTAGGATTGTGCCCAAACAGTATCACGTTCTCAATACTTATAGTGGCAATTGAGAAGAAGGATGATATGGAAGCAGCACAAATGCTCCTTTCTCAAGCCAAAATGGATGGTGCAGTTCCTAATCTCATCATGTGTCGATGCATAATTGGAATGTGCTTGCGGAGATTTGAGAAGGCTTGCTTCGTTGGTGAATCAGTTTTATCTTTTGACACGGGTCGGCCACAAGTTAATAGTAAATGGACATCACTGGCTTTAATGGTGTATCGTGAAGCAATTGGAGCAGGTGAAAAACCTACAAGTGAAATATTGTCACAAATTCTGGGATGCTTGAAACTCCCGTATGATACATATGTAAAAAATAGTCTTATTGAGAACCTGGGAGTAAGTTCTGAAACTTCAAGAAGCACAAACCTCTGTTCATTAATAGATGGATTTGGTGAATACGATCCTCGTGCCTTTTCAATACTTGAGGAAGCTGCTTCGCATGGAGTTGTTCCATCTGTATCATTTAAAGCGAATCCCATTGTTATTGATTGTAAAGAATTGCATGCTTTTACTGCGGAGGTATACGTCTTAACTGTTTTGAAAGGTCTCAAGCATAGACTGGCAGCAGGTGTAAGATTACCCAATATAATCATTTTATTGCCTGTAGAAACAGCACAAGTTTCGTCTCCCAGCGGGGGAAAGATTATTATCCTTGCAGAAAGAGCTGGCCAAGCAGTTGCAGCGTTATTGAGGAGGCTTGAGATCCCTTACCAGGGTAATGAATCAAACGGGAAGCTTAGAATTAATAGTCCGCTCCTGACAAAATGGTTTCAGCCAAAACTTGCATCTCCATTCAGCGGTTTCCCAGGTGACCGGAGCTCATCCCAATCACGACTGGGCAGAAGTATTAGCCATCAGCAGCGAAACATTCGAACTGGAAATCTATCGTTGAACTAA

Protein:

>Am05G013130.1
MELNFCYHRSLKLTSPLSLSTHRTHFLGCVHTLRPPSTVSPQLRNRNKRSRLGLLPLRSSRFVFKASFQSHPLIVVVVVVTLSAVSLLHFTRNKKKKTLNQTQGHAKFALSPQGSNVGSQVIDSQILGFPEFQRDRPLNEIGKLNDHKGEDRLVFEDQEIPLQFLKSSMVQEAALKTKTSDSSFSVFDSSVNNNSSEVLNESFLSAAFQTSSLEPLAFAEEMILQVEENQDEVDSDPELPLNMVESELNASLVGVNDAHATINGHTKEKIEPVISNDVLFGKSVREGLYMFYEDNKSVTGSMTPLSSVKSFSPRASFTNRKGFPSATGNTTLKGLGLSTDISLQSAEYVEGGVNISSHKEGYSLQHFSKNLRKASRYPRDGERNYMDRDSNKEVLPQSAHRIRAHVDQKNDQIRVHDGQTIDPSEHLSKYNNLLKAGRLHECVELLKDMETKGLLDMTKVYHAKFFNICKKQKAVKEAFDYIRLIPNPTLSTFNMLMSVCTTSQDSEGAFQVMQLLKDARLGPDCKLYTTLISTCAKSGKVDLMFEVFHKMVSSGVEPNVNTYGALIDGCGRAGQVGKAFGAYGIMRSKNVKPDRVVFNALIAACAQSGAVTRAFDVVAEMEAELQPIEPDHITIGTLMKACASAGQVERAKHVYKMIQQHNIKGSSEVYTIAINSCSQTGDWEFARSVYNDMTQKRVLPDEMVLSALIDVAGHANKLDAAFDILQEARKGGMQIGKMAYSSLMGACSKTRNWQKALELYEYLKSLKLVQTVSAVNALLTALCDGDQFQKALEVLSEMKELGLCPNSITFSILIVAIEKKDDMEAAQMLLSQAKMDGAVPNLIMCRCIIGMCLRRFEKACFVGESVLSFDTGRPQVNSKWTSLALMVYREAIGAGEKPTSEILSQILGCLKLPYDTYVKNSLIENLGVSSETSRSTNLCSLIDGFGEYDPRAFSILEEAASHGVVPSVSFKANPIVIDCKELHAFTAEVYVLTVLKGLKHRLAAGVRLPNIIILLPVETAQVSSPSGGKIIILAERAGQAVAALLRRLEIPYQGNESNGKLRINSPLLTKWFQPKLASPFSGFPGDRSSSQSRLGRSISHQQRNIRTGNLSLN*

Promoter(3k):

>AM05G013130.1
CTGAAGTGCAACCCGCGTGTTGCTACAGTTGATAACCCACTGGGTTCCGCAGGAACCGTTTTGGCAGCCAAGTTGGGCTGTTGCGTTTTTTTGGTCACTGTGGGCTGATTCTAGTGGGCTGGGCAATTGATAGTTGCACTCCTGCTATTTGATTTTGCAACCTGAAAGATAAATCAAATCAATTGGTTATAAAATTCAACATATCATACTTCCTAACAAACTCAATATAAGAGTCTTTTAAAAAATGAAGAAAGAACATGTCTACAATTTTGAATAATGGACCCAAACCCATCCACCACTCAGCGCCTTGCCAACCTTGACATCTACTAGAGAAGTGAACCACAATGTCTTAGCACCAATAAAAAACCAAATTCATCCTTACGTATAAGTGAATACCCACACGATCACTTTGGGTATCAAAGGAAGCATATATATTGCATTTCACATACCCCACAAGAGGTTTCCTCCATCGGACCTCAATTGTTCCATCAACAAAATATGTACCCGAGTATTATGTTTACTTCTAGCATTACACATTCCTCCAAATAAGTTGCACCACAATGCACAATGCTTGTGGGGGTCCTCAACAACATTTTCCCACACCATTGAATTACGTTCACGCCATAAACTCCATAACACTATAGAAAAATATTTCTACTTGTGTTACAAAGTTGTTGCAAAAACATGAACATTTTAGCAGGAAAATCAATATTTAACCCAGTAACATTTGAAACTTCACTAGCCAAGTTGACCAATTGCCAACAACGCAAAACTTTTAGACATTGCAAAAATAGATGGCTACTAGTTTCATCATAGACACTACACCATGGACAAGAAGTAGCAACAGAAATACCTCTAAATGTGAGCTGCTCACATGACGGCGCATACTGACGACATAATCTCCATATGAAAGACTTCACTTTGGGAGGAATTTGAAGATTCAAAATTTGCCTCCATTGCCCAGGAACCCGCAGATACTAGGTATCTAATATATATGATCCAGGCATAGTCTAATGGTGGAGCGCACAATATATTCTCCACTACCAGACTTTGGTGTCAGCTCGAACGACCTCAAGGTTAAAGAAGTGTGATTAACAACTAGAATTATGAAACACAACAGTTAAAAATTTGCAAATAGAAGAGCCATAAACATCCCACTTGGACTTAAAGAATAAGGACTTAAAGTTATGCGGGATACGAGCACTTGTTTAGATATCCTACAAGTAGAGATTAGAGAACATATTATGATAAAGATAAACCAACATATTCTTCCCCCAGTGGAAAAAAGACATTATTAAGTATCATTTAGCATCAGTTGTTTGAACAGCCGATGCTAAATGTTGAACCGATGACATTTTTGCAATTAAATGGAAGATTTCATATTTCGCGCCTACTTTTAGCGTCGGGTGTTTAAACACCCGATGCTAAATGTCTAAAGCAAATACATTTAGCATCGGGTGTTTAAACACCCGACGCTACAGGTCATGTTTTATTTTTTTCACTTCTTCCATCGCATACACACTAGTCTTCGCATTCTCACTCTCACTCTCTCAAGGCTCTCTCGCTCTCTCTCTGAACCTCCATCTTCCTCGTTGTCGCCGTTGCTTTTGTAATTGTAAATCCTGGTTGTTATAAATTCTGTTTTGTGTAAATTCTGGCTGTGTTATGGGTTCTGTTATGGTTGTTATATGGCTGTGTTCTGGCTGAGTTATGTTATGGTTGTTATAATATGGCTGTGTTCTGACTGTGTGACAACCATAACAATAGCAGGTTTTTATAAATTCTGGTTTGGATAAAAATCAACAATATATAAAAAGAAACTAGACATTTAGCATCGGTTATTCTAAATAACCGATGCTAAATGTCTTTTTTTTTATTATGAAAAATGACATTTAGCATCGGGTATTTAGAATACCCGATGCTAAATGTCTCAACAAATAATTTTTAGCATTGGTTATTTGAAACAACCGATGCTAAAAGTTATTTGTTGAGACATTTAGCATCGGGTATTTAAATACCCGGTGCTAAATGTCATTTTTTTTCCAAAAAATTACATTTAGCATCGGTTATTTCTTAGCATCGGTTATTTGAAACAACCGATGCTAAATGTCTCAAAAAATAACTTTTAGCATCGGTTGTTTCAAATACTTTTTAGTATGGACATGAAAAGTAAGAATCGTGCATTTCTTTTCATTGATTCCACTTTCATTTTTATGCAAGCTATTTCGTACATTTTGTTTCCTACGAAATAGCACTACTGTTTGAAGATGTTACAAATAGAATCTCTTTTCAAGTCCTGAGAGTTTAATTACATCCTTTTCATATTGTTGATCCTAGAATCACAAAGATAACATGAATAATTTTGTATAATTAGCAGTGTTCTAAGAATTGGATTGACCTGGCTGCTGGTTCAACTTGGAATCCTCCAATTTGATGGTTGGTTCATCCCCATTTGAACCATGGTCTAGTTAAACCACTCAAAACCATGTTGATTCGTTAATCGAACGAAGCTGAACGATTTGAAATGTTTTTTCTTTATTAATTCCCTCCAAATGTAGTACTCATGTATTTATTTATTCATTAATCGTTGATATGATTTAACCTAATGAAACAATTAAACAATGTCTTTAAAACATAAATAATAGTCCAGCATTTTATTTACGGAATCCAACATTTGTTTTAGATTTGCAATTAATTAACCACCACCAAAAAAGATTTGCAATTAACTGTTAGCTAATTAATCTACTACCGGATTAACGGTATTTTAATTAATTAATAATTAATTTTATAAGAAGCTAACCGCGGAGAGTAGAGAGTGTCATAACAGAAAAACAAAAAAGCGACACGTCAGCAAGTAATAGGATCGGATGAGCCAGAAGTTCCTGCCTCTGGTTTCAAGTGCCACAACCTCCTCCTCTCCTTCCTGCTAATGCTCTATTCTTAAATGCTACTTCTCCACTCTTTCTTCTTTCTCTCTCTCCTCTTCCTTCTTCTTCATCC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF13041.9	PPR_2	524	570	4.20E-53
PF13041.9	PPR_2	558	595	4.20E-53
PF13041.9	PPR_2	593	643	4.20E-53
PF13041.9	PPR_2	772	814	4.20E-53
PF01535.23	PPR	528	556	2.00E-48
PF13812.9	PPR_3	521	571	1.70E-36
PF12854.10	PPR_1	555	580	5.50E-31
PF17177.7	PPR_long	492	629	1.50E-29
PF17177.7	PPR_long	639	812	1.50E-29

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0016020	membrane	Cellular Component
GO:0048255	mRNA stabilization	Biological Process
GO:0008233	peptidase activity	Molecular Function
GO:0051301	cell division	Biological Process
GO:0006508	proteolysis	Biological Process

InterPro

InterPro term	Description
IPR011990	Tetratricopeptide-like helical domain superfamily
IPR002885	Pentatricopeptide repeat
IPR033443	Pentacotripeptide-repeat region of PRORP

trEMBL

trEMBL term	Description
A0A1S2YJR3	_

SwissProt

SwissProt term	Description
PP349_ARATH	Pentatricopeptide repeat-containing protein MRL1, chloroplastic

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G34830	Pentatricopeptide repeat (PPR) superfamily protein
Medicago sativa L.	MsG0480021390.01.T01	_
Oryza sativa L.	LOC_Os10g10170.1	PPR repeat domain containing protein, putative, expressed
Cucumis sativus L.	Csa016783	_
Glycyrrhiza uralensis Fisch.	Glyur000017s00002467.1	_
Codonopsis lanceolata	Cl_chr05_03710T	_
Arachis hypogaea L.	AH13G08330.1	Pentatricopeptide repeat-containing protein MRL1, chloroplastic like

Expression pattern