Gene detail

Detail information of Am05G012860.1 Annotation

Gene ID	Annotation
Am05G012860.1	cold shock domain protein 1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G012860.1	mRNA	Chr05	96183971	96185120	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM05G012860.1
TGATTAGTAGAGTTATGGACAGGCCCAGAACATCGCACCTAGCTGCTGCTAAACGAATCCTAAGATATGTCAAAGGCACTGTGGCATATGGAATTCCATTGCCTAGTAAATGCAGAGACAATGAGAAATGCCTCTATGGCTTCAATGATGCTGATTGGGGAGGTGACAAATCTGATCGAAAGAGCACTGCTGGCTTTGTGTTTCTGCTTGGCTCAGGTCCCATCTCATGGAGTTGGAAGAAGGAATCAGTGGTGGCATTGTCCTCATGCGAAGCTGAGTACATTGCTGCTTCAATGGGAGCCTGTCAAGCAATCTGGCTAGACAATCTGATGCAAGAGCTAATGATCAAGAAGGAAGGTGCTGTGGAGTTATATGTCGAAAACAAGTCTGCAATTACCTTGGCGAAACATCCAGTGGCACATGGACGGTCGAAGCACATTGAGACACGTTATCATTTCTTAAGAGACCAAGTCACAAAAGGAAGGCTGAAGCTGAGCTACTGTAGATCAGATATGCAGGCAGCTGATTTGTTCACCAAGGCAGTGAAGGCAGAGACATTCAAAAGGCTAAGGAGCATGCTGAATGTGATTGAGTGTAATAAGTTTACGTAGATAGATTCTACTGTATTTTGTTGTTATTTGCTTATGTTAGTAACTAGCTTAAGGGGGTGTGTTAAATAAGTAAGCTAGTTCGACTAGCTGTTTCAACTTAGCCAGTTCGACCACTCTCAACTTGTCTGTCGAACTAGAGGGTGTCGAAGTTTCCCTTTAGATTTGATTTTATGCTTTCATTAATTGCTGACTCCGCATACGTAATGTACTATATAAACAATCTCAGTGATGCAATGTGCAGAGCACACATTTTCAGTTTTCACTCTAACTGAATTCTGTTATTCTCTCTCTCCCTCTCCCTCTCCCTCTCTCTCTCAAGTGTGTGCGTGTGTGAGTGAACACAGTGAATCAAAAACTTCCAACATATATCACTAGTTATCTCATGTTTTTTTATATATCAGTGCAGTTATCTCGTAGTTTCGATTGATTATTTTAGTTGATTAGTAGATTATAGTAGATAGTAAAAGTTAGATAGTAGATTATCAATTAGAAATATTTTTTTTAAATATTAATTAGTAGTTTAAATAGTCATTAAGTCTTCTTCTTTTTTAGATAGTAGGTTTGTATTAGTAGTCTTCAAAAATTTTAATTAGCAATGCCAAATATTAATCTCATGTTTTTTATATATCAGTGCAGTTATCCCGTGTTTTTTTATATATTACTGCAGTTATCTCGTAGTTTCAATTGATTATTTTAATTGATTGGTATATTATAGTAAATAGTAAAAGAGAGATAGTAGATTATCAATAAGAAGTGATAGTAGATTATCAATAAGAGTGTAAACAGATTTCGGAGAGCAAAATTTAAATTTAAAGTGATAACTTTTTTCCAAAAAGGTGATAGTTTTATTTTGTTTTTTTAGTGTGACTCATTTATATTTTTATAGGTAATTTTAGTAGAGTAGTGTTTGCATAAATTTAGAAATTTGTATAAATTTAGAAATGTAGTTAAAAAACTAAATTTAGTTAAAAAACTAAATTTAGAAATTTAGAAATTTGTATAATTGTTACTAATTATTTAAATTTTCTTTTGTTCATAAGAGCTAATACAAGTGGAGAAGTCAACCAACACCGTTGGCCCAGTGGCTTAATCTACCCTGGGACACGGGGGGTTGACCCGGTGCTCCTGGGTTCGATTCCCGCAGTGGACAAACTCGGTGTTGGCCAGTGCGAAATTTGATCCTAGCACGAGCGGAGATTAGTCTTTCGTTGAAAGCGTTGGGACACTCTGGGTGCTTTGTTTGACCCGACCCGAAGATGGTGATGGAGAAAGGAAGAAGAAGTGAAGAGCGTTTACTGGGTGCTCTGTTTGACCCGACCCGAAAATAGATTTGGGTTTTGGTTGATGATTCTGGGATCTCTCTATTGTCACTACTAACCTATTTCTGGGTTTGGATTAACAATTTCTAGTACAGAATCCATAACAAAAACTGAAAAACTAATTGTGGTGTTTCGTAATAGTTCTAAAAATTGGCTTCCGGAAATACCTCTTTTGAGGAGATTTCGGTAAGTTCTAAAAATTGGTTTCCGGAATTAGCATCTTTTGAGGTAATTCCAAAAAGTTTTAAAATTTTGAGGGGTATTTTAGGGATTAAATGGGTTATGAAAGTATAAGGTATTAAAAAGCCTTATTTCTATCTCCACGCCATTTCGTTTATTGATTTTTTTGATAAACAACGTTAATGGAAGTGGAAAAATATTAGTTTTTGTGATTTGAACCCATGACCTCTTTCTAGTACTCTTTTTTGGTGCACTCCTTGATATCAATTCAGCGAGTAAAAATCAAAGCCATAGCCCGCACCGTAACCACCGTGTGATGAAGAAGAGATATTTTGGGAAGAGTGAGAAACATCCGAAGCGATTTCACAAAATTCAAAGTTAAAAAATGAAGCAGCGTTGACCACTCCCCTATCAGTGGCAGCATAGCAGCAGGTACGATCTCATAATCCAACGATCAAAATTCAATTCGCAGGAAGCCGAAAAACCCCCAACCACAAGATGGGCTTCAGAATCCAATTCGTCCCTCTGAATCGGATTAGATGGATCAGAAATCGGGGCCACATCATTCCCATAAAAAGATAAAGGCCCATTAATATATCCTAAAACGATAATAGGACGAAAATTTTGCATTTGGAAACTGCACGAATTAACTACAGCCGTTTGATATATCCTAGGGCAATTTCGTTTTACCAATAACGGTTAGATTATTAGGGTTAATGTGAAAAAAGATGAGAGGGTATTACGGTAATTGTGATTTACGTTTCGGTGACGTGCCGCTCCACAAATGTGATTGCGAGTGATGGTTATATAAGAGCACCACACATCAAAGAGTTTAGGGTTACCGCAAGTTGGTAGAGAGAATTTTGAGGGTTTTCTGAGAAAATTTGAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00313.25	CSD	7	71	7.10E-27
PF00098.26	zf-CCHC	149	165	1.20E-16
PF00098.26	zf-CCHC	187	202	1.20E-16

Gene family

Gene family	Subfamily
Transcription Factors Family	CSD

Gene Ontology

GO term	Description	Category
GO:0009409	response to cold	Biological Process
GO:0005829	cytosol	Cellular Component
GO:0005634	nucleus	Cellular Component
GO:0003723	RNA binding	Molecular Function
GO:0009793	embryo development ending in seed dormancy	Biological Process

InterPro

InterPro term	Description
IPR036875	Zinc finger, CCHC-type superfamily
IPR001878	Zinc finger, CCHC-type
IPR012340	Nucleic acid-binding, OB-fold
IPR002059	Cold-shock protein, DNA-binding
IPR019844	Cold-shock (CSD) domain
IPR011129	Cold shock domain

trEMBL

trEMBL term	Description
A0A088FZS5	_

SwissProt

SwissProt term	Description
GRP2_NICSY	Glycine-rich protein 2

KEGG

KO	Description	Enzyme
K03704	cold shock protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT4G36020	cold shock domain protein 1
Medicago sativa L.	MsG0480021448.01.T01	_
Oryza sativa L.	LOC_Os02g02870.1	glycine-rich protein 2, putative, expressed
Cucumis sativus L.	Csa008078	_
Glycyrrhiza uralensis Fisch.	Glyur000077s00006678.1	_
Codonopsis lanceolata	Cl_chr07_21860T	_
Arachis hypogaea L.	AH17G30910.1	Cold shock protein 1 like

Expression pattern