Gene detail

Detail information of Am05G012510.1 Annotation

Gene ID	Annotation
Am05G012510.1	Zinc finger C-x8-C-x5-C-x3-H type family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G012510.1	mRNA	Chr05	94905063	94918820	-

Sequences

CDS:

>Am05G012510.1
ATGGAAGAGAAATGGGATTCAGCGAGGAAGATGGAGCTGGAGAGTCGAAAGGAGAAGAGGAAGGACTTGAAGAAAATGAAGAGAAAGCAGAGAAGGAAGGAGATGGCGGAGAAGGAGCGGTTGGAGGAAGAGGCGCGTCTCAAGGATCCAGAGGAGCAGAGAAAGAGGCTGTTGATGGAGCAGCAAGAGGCGGAGAGGATCGAAAGAGACAGGATCGCCTTCGAGGAGAGGGAGATGGCTTGGATCCTCAAGCATCAACAACTTCTCCAGCAACAACAATCTCAAGACCAAGACGACGGCGATGATGACGACTACAACAACACTGATAATCATAATAATGATGGTCAAGAAGATGAAGATGATGAAGAAGGTCCTCCGGAGATTATTTGGCAAGGAAATGAGATAATTGTGAAGAAGAAGAAGAAAACGGTGAAGCCCAACCTCCTCCTCCACCACCAGGAGCATGAACATGCACGCGATGGTAACAGACCTACATCAAATCCCTTTCCCCCAGAATCTCCCTCTTCAGTGATGCCGAAGAATGTTGCTCAACAAATGCCTAATTTTGGAACTGAACAGGATAAAGCTCACTGTCCTTTTCATCTTAAAACCGGAGCGTGTCGTTTTGGTCAACGTTGTAGCAGAGTCCATTTTTACCCCGATAAGTCTTGCACCCTCCTCATCAAAAACATGTACAATGGTCCTGGCCTCGCTTGGGAGCAAGATGAGGGCCTTGAGTATACGGATGAGGAGGTTGATTGCTGTTTTGAAGAATTCTATGAAGATGTTCACACAGAGTTCCTGAAGTTTGGAGAAATTGTGAACTTCAAGGTGTGTAAAAATGGTTCATTTCACTTGCGAGGAAATGTCTACGTACAGTATAAATTGTTGGATTCTGCTGTGCTTGCTTATAACTCGGTTAATGGTCGCTACTTTGCTGGGAAACAGGTTAGTTGTAATTTTGTTAATCTGACAAGATGGAAGGTTGCCATATGTGGCGAGTACATGAAATCAGGGTACAAGACTTGTTCCCATGGAACAGCTTGCAATTTTATCCACTGTTTCCACAATCCTGGTGGAGACTATGAATGGGCAGATTCCGACAAACCACCCCCAAAATATTGGGTGAAAAATATGACTGCTTTATTTGGTTATTCTGATGATTATGAGACCTTAAGGGAGCATGGAAATTCCAGTTTGCTGAAGAACTCCAGCAACGTGCCAAAAACTGATTCTGACAGGTATCACTCAAGAAGATCAAGATCTAAGGAGATGGATCAATCAAGTAGTGGTCGTTCCTCTAGAAGAAAATGGAAAGATGAAAGGACACAGATAACTCCTCCTGATGAGGAATGGAATGCCGACTTTAAAGACAATCATAAAAGGAAATGCAGACATAGAACTCCTGATACTTATTCTGATAGGGAAAAGCACAATGAACGCAGCACTAGGAAAAGCTCATTTAACATGAACAAGGATGATGAGAGCAGAAGCCATGAAGAGTATTCTGATGTGGATTGGGATACTACAACCAGAGAGGATGAAAAGCGGAATGGCAGAGAAGGAAGGAACTCACGAAAGTGGAACAGGGATGATATTGACCGGATTTATGAGACAGGATCAGATGGGGATAGACATAGATCAAGGCACCATAATAGCCCAAGGAAAAGATCAAGACATCGGACCAGGGACAGCAGTAATGTAACTGATGAATCCGATTCTGACAAAGATAGAGGCGAGATGGAAACGCAACATGATTACTCTAGGAAAAGCTCGAGACACAGAAGATCCCGTCTCCAGGATTACTGTAAGGACTGA

Protein:

Promoter(3k):

>AM05G012510.1
TTTTACGATTTCTAAAAACGTTAGTGTTGCCTACACTGCTAATCCCTATATTGGTTAATCTAATTGTTTGTACTCTTAATATAAAATTTTAAAAATTTAATTTACATGCCTTGAAAACAACTCATCATTATTTACGTGTGCTATTTGCAACTATTTTTGGTGAGAGTGAGTGTTGTTGATTCTAAAATTGAAATTCAAAGGACTTTTAATGAATAGGGTTGAAAAATTGAGGAGACTTGGCTTCTGGATCTTGAATAAGAGGGTCAAAATTTAGAACTCTGGAAAGATGGTGGAAAAAGGGAACGATGGTGAAGATTAGGCTTTAATGGAAGATGTGGTTGTGCCAATTCTTGGAAGCATTCATGAGGGAGGAGATTATGAACAGACAACCACATAAGTTATTTTTTAATGGAGTTTGATGAAAAGTGAGAAATGTCAAATGAGTAAAACACAACTTGGAAGATGTGGTTGTGTCTCTAAAGCACCTTTTGACTAGATTTTTTCAAATGCTAAGTAGTGTTGAAATCAATCTTATACAAGCACTTAGTAGAGCACATGAGGAATTTTGCCTTATTTTAATTCATGAGCGTATAGTAAATCAACAATAGAACCAATATTTATAACACTTTTAATTTTTATAAAAAAGGTTGAGCAAGAATAGCTATTCACTTTTTATACTTCATAGTAATGAGGGAGAGGGGGAGGGGGGGGGGGGGGCATTTTCAAAATAGACAATACATGGCTTCAAATACAAAACACGTAATCCCTCGATTTCTAATCTTTCGTACTTTTAGCTTGTTACACACATATTAATGTATTATTAATTTGTGTTGGTTAAATACAAAAATACCTCATTTGTAGTTGTTTTGGGATAATTGAAGTCAAAATAAAAGAGTCTTGGAACAATTAATTCATACTTTGAGACTCTAAAAATCTCAATAAATATAAATGGTATATTAGGAAAAATTGGATGAATTGTACTTTGGGTTTTTAAAAATACCATTGTTTTGGAACAAAAATAAAAGGTCAAAAATACCAAAGATCAGAAACAGAAGGAGTACAAAATAAGCATAGTAAAACATGTTTTGTAGATAAACGTCATCCACTAAAACATCTACCAGAAACCTATTTTTATGGTTTTGAGTTTTAGTTGAAACTTTTTTTAAAATCAAGGAAAAAATCAATTCAACTCAATTTTACTCGAACATGTTTTGTTTTCCATTTTACCGTGTTAGTTTTGATTCATATCCCCACCAACAATTCAAACAAAAAAATTTGGTGTTTGAATTTGAGTCATGGAATGGTTGAAGAAGAAGAACCCTAGTTTTTTTAATTTGGGGTTTTTTTTGGAGTTGAAAATGAAGATAAGTCAACAAAAAAAACAGTGACATGTGAGCTCAGTTACTAACATGTCAACTCCGTTAGTGCTAATAATTAGGTCTTTTTGTAACAGAAATACTAAAAAAGACTCATGGTGAAAACATCATTTAACTTGAAGGTCTAACTTGTTAAAAAAAATAATTTAAAGGACCATGAGTAATTTTGCCAAAAAGAAATTAAAAATCTAAAAATCAAGAGAAAACCTTCTTCTCTTCCGTCGCGCTCTTCAACCCTTCTTCTCCCCTTGTCCCAGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGCAACGAGCACCAACTTTCCATTACCCAATATCGGTCGAGTTTGGATCGGGCTGTGGCTGTGTTCGCTGCGAAGGCGAAGAAGAGAAACTCGGTGGCGACGCCTCTCGACGAAGTGGATCGTACCATGTACACCACCTTCTGCAGCACCGCCAATTCCCTCTCCCATCTCTCTACACCCACTCCATGAATCAACAAAAACTCTCCTTCTAAGCCGGTAAACTGCTAGATATTACTTGCTCGTGTGTTTGAATGTGTTGTTTTGCTTGCTTACTGTTGAAATTTTGGTTCATTCATTTCCTTTGTTTGTTTGAAAATAAATGCTTTGGTGTGCTTCCAATTCCTTGCAGGTTTCGTTTTTTTTTGTTTTTGCAATATTTACTGATATTTCATTTGGGGTCTTTTTAGGTTTTGCATTCTGTGTGGCACTAATAGCTTATCTTGCAATCAGGTCTATCTTTGCTTATAGCTAATAGCTCCCCATGTAAATTGCTTTGAATTTGAAATTCTATTTAACAGGCATCATCCTTAAGCCTTTGGTTTTATAATTTGTCATGGATATACCAGAAAATCTTTTAACTTGGCACTTTGATTTTTCTCAAAACCGAACACTATGGCTGTGTGCCATTTTTCCTGTCCCTAGTTTTTATTTGTATTAGAGTTATGAAAGGAAACTTGAAGTTGCTACGGTATGACTAAAGTCTAGTTTGAGTTAGTTTGTAACTTATAGGAGCTTTTGAACTAAAATAAGCATCTCCAAGCTTATAAGGGTTTCTTTGCAATTGAAGAACCATAAACTTATTATAAGCGAGAAGCTAATTCAAGCTGGACCCTTAATTTCTAACTCATAAAAAATTCTTCACAAATTTTATATGTACTGTATTTGTGGAGCTGAAGTTTATATACATTTGCAAGAGAAGCTATTAGTTAAAAACTCATGGTTATTGCAAGATATTTCAACTTGTTTTCCCGTAACCGTTTGTGAAATACGTTATTCAAATTGGCTTTAAGAGGTCAATAAATCAATCATGGAATCAATTTATTGCAAATGCAATCCAAGACTTTGTTTTATTATACACAATGAATCCAAACCTTTCTTGAAATTTACCATGCATGAGTTATACAGTATCATAAGATTTAGGAAAAGTTACTCGATAGGTCATTTATCTTCATTTCAAATTTCATGTGATTTAGTTATGTGGTTGCTGACATTTCATCTTCTTCCTTTTACAATGGAACCTTAGGGTTCATCTTCTTCCCCGAAATTGGTAACTTAGGGTTCATAGTTCCCAATCCTTTTGCATTGAGGAAAGGAAAAGAGGGTTCTGGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00642.27	zf-CCCH	327	354	4.40E-12

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0046872	metal ion binding	Molecular Function
GO:0008353	RNA polymerase II CTD heptapeptide repeat kinase activity	Molecular Function
GO:0004693	cyclin-dependent protein serine/threonine kinase activity	Molecular Function
GO:0051726	regulation of cell cycle	Biological Process
GO:0006357	regulation of transcription by RNA polymerase II	Biological Process

InterPro

InterPro term	Description
IPR000571	Zinc finger, CCCH-type
IPR009145	U2 auxiliary factor small subunit
IPR035979	RNA-binding domain superfamily
IPR003954	RNA recognition motif domain, eukaryote
IPR000504	RNA recognition motif domain
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily

trEMBL

trEMBL term	Description
G7IN58	_

SwissProt

SwissProt term	Description
C3H5_ARATH	Zinc finger CCCH domain-containing protein 5

KEGG

KO	Description	Enzyme
K24273	U2 small nuclear ribonucleoprotein auxiliary factor 35 kDa subunit-related protein

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G10320	Zinc finger C-x8-C-x5-C-x3-H type family protein
Medicago sativa L.	MsG0280006299.01.T01	_
Oryza sativa L.	LOC_Os02g35150.1	splicing factor U2AF, putative, expressed
Cucumis sativus L.	Csa011976	_
Glycyrrhiza uralensis Fisch.	Glyur000250s00014113.2	_
Codonopsis lanceolata	Cl_chr05_32120T	_
Arachis hypogaea L.	AH12G20290.1	Zinc finger CCCH domain-containing protein 5 like

Expression pattern