Gene detail

Detail information of Am05G012410.1 Annotation

Gene ID	Annotation
Am05G012410.1	pre-mRNA-processing protein 40C

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G012410.1	mRNA	Chr05	94536435	94553383	-

Sequences

CDS:

>Am05G012410.1
ATGGCTTCACCTGCGTGGTTGCCTCAAGAGCAGCCACCTAAGTCCGGAGAAACACCTTCCACCCCGAATTCCGCTTCCACTCCGGCTCCAGGGACACCGTTCTCTTACAACATGCATCATAATGTCAATGCTTCTGGAAATTCTCAGCAGTCGCCGGCACATCCTGGGATGAAGTCTAATTCTCCCATGGTTGTTCAACCTCCAGTTCCTCCTGGTCTATCTCCACATGCAGCCCCTTCTTTTTTATACAATACTTCCCAAAATGTGCCGCCTTTTTCTAGCAATCAACATTTGCACTCGGGCACAAATATGCTGGTTCCCACTGCTCAAAATGTTAGTAAAGTGTCATCTGCATCTAGTATCCTACATCCTGCTCCTGCTCCTAATTCTATATCTTCAATGCCGCCACCCTCTGACCCTAACTATCGCCCGACTACTTCATGGATGCCAACTGCCCCAACTTTTCCGGTCCATCCTGTAATGCCTGGACCTCCTGGGAATCCTGGTCCCCCTGGATTAGCAAAGCCTGGGGTAATACCCTGCAGTCCAGCTGCTCCATCCACAGGCACAGATTCTTCCTCAACTGCAGTACTGAGACAAAATATGCTAACTGCACCTATTGCATCAGATCCCACCGCCTCACAGAAAGGCTTACCTTATCCACCCATACCTTCCATGGTTGCTCCTCCTCAGGGATTTTGGTTACAGCCTCCACAGATGAGTGGTGTACTTAGGCCACCATTTCTTCAATATCCTCATCCTGCTGGTTTTCCTGGTCCATTCCCATTTCCAGCACGTGGTGTACATCTCCCTGCTGTTCCAGTACCCGATTCTCAACCTCCAGGTGTTACTCCTGTGGGTGCTGTTGGCACTTTTGCATCTTCTACTTCCATTCACCAGCCAAGGGGAACAGGTGGTTTGCAGACAGAAGTGATTTCAGTGCATCCTGATGACAAGAAATTAAATGCCGTTGTCACACAGAATGAGGATGCCACTAATGATCAATTAGATGCTTGGACTGCCCACAAGACTGAAGCAGGAGTTGTTTATTATTACAATGCCGTGACAAGGGAATCAACGTATGCTAAACCTGCTGGCTTTAAAGGGGAGTCTCACCAAGTTTCTGTGCAGCCAACTCCGGCTTCAGTGGTAGATCTGCCAGGTACTGATTGGCAGTTGGTGTCTACCAGTGATGGGAAAAAATATTACTATAACAATCAAACTAAGACAAGCTGCTGGCAAATCCCGAGTGAGGTGGCTGAATTGAAAAAGAAGCAGGATGGTGATGTTGCAAGAGATCATTTAATGTCAGTTTCAAAAACTAATGTATTATCTGATAGAGGGTCTGGAATGGTTACTCTGAATGCTCCTGCCATTAATACTGGTGGTCGTGATGCTGCAGCTCCTAAACCCTCTAGTGTACAGAGCCCATCTTCGGCACTGGATTTGATCAAGAAGAAGTTGCAGGAGTCGGGAACACCTGTTGCTTCCTCTGCTATTCCTACACCATCAGTTCAATCAGGATCTGAATCAAATGGTTCAAAAGCAACTGAATCTACAGCTAAGGGCCTGCAAAATGATAATAGCAAAGATAAAGAAAAAGATGCTAATGGTGATACTAATGTCTCTGATTCATCTTCAGAGTCAGAAGACGAGGATAATGGGCCTTCAAAGGAGGAGTGCATAAATCAATTTAAGGAAATGCTTAAGGAGCGAGGTGTGGCACCATTCTCAAAGTGGGAGAAAGAACTGCCGAAGATAGTTTTCGATCCACGTTTTAAGGCTATCCCTAGTCATTCCGCTAGGAGATCCCTGTTTGAACATTATGTTAAAACTCGTGCGGAAGAAGAACGCAAAGAAAAACGTGCTGCACAGAAGGCTGCAATTGAGGGTTTCAAGCAGTTACTAGATGAAGCATCAGAGGATATTAACCACGACACTGATTATCACACTTTTCGTAAGAAATGGGGAAACGATCCGCGGTTTGAGGCAGTTGACCGGAAGGAACGGGAGCATCTACTGAATGAAAGAGTGCTTCCTTTGAAGAAAGCCACTGAAGAAAAAGCTCAAGCGATGCGTGAAGCAGCTGCTGCCAGTTTTAAGTCAATGCTTGAAGAACGAGGAGATATAGCTTTAAACTCCCGTTGGTCCAGGGTTAAAGAAAGTTTAAGGGATGACCCAAGGTATAAATCAGTGAAACATGAGGATAGGGAGTTCTTGTTCAATGAGTATATATCTGAGTTGAAAGCCATTGAACATGCAGCTGAACGAGAAACCAGAGCTAAAAGGGATGAGCAGGATAAGCTGCGGGAGAGGGAACGGGAGATGCGTAAAAGGAAGGAAAGAGAAGAACAGGAAATGGAAAGGGTACGACTAAAAATTCGAAGGAAGGATGCAGTTACTTCTTTTCAAGCTTTACTTGTGGAGACAATCAAAGATCCTATGGCATCGTGGACAGAATCTAAGCCTAAATTAGAAAAGGATCCTCAAGGACGTGCAGCTAATTCTGATCTTGATCCAGCTGACACCGAAAAACTCTTTCGGGAACATATAAAGATGCTTCAGGAACGTTGCGTACAAGAGTTTAGAACTCTCTTAGCTGAAGTATTGACTTCTGAAGCCGCATCTCAGGAAACTGAGGACGGGAAAACACCGATTAATTCATGGTCTACGGCTAAACGTCTTTTAAAATCAGATCTAAGATATAGTAAGGTTCCAAGAAACGAAAGAGAAGGCTTGTGGCGCAGGTATGCAGAGGATATGCTGCGGCGTAAAAAGTCAGCTAATGATTCAAAGGAAGAAAAACGTACAGATGCCAGAAGTAAATATTCTCTAGAATCTTCCAAACTACCAGGGGAATCACGGAGATCACTTGAGAGAAGATAA

Protein:

Promoter(3k):

>AM05G012410.1
AACCAGAGAGTAGAAGAAGAATGTGCAAAAGATACACTCCTCCAACTCCTACGCATGAACTGGTGTGCTGACCGTGATATAGCATGAGCAGAACACGATCTTCTAGTGGATGGTTGATGATGGATCTTCAATGGATGTAAGAGGACAGCTTATCACTGTGTTTTTCCTCAAAAATCAGAGAAGTTTTGGTGCTGGAAGTTGATGATGAAGTGCAGAAGTGAAGCTTCCTTTTATAGAGTGGTTTTCCCTCCTTTTTGCAAAGTTATGAGACATGTGGGTCTCTTCCTCACCAACTAAATCAAGTCACAAGTAGACAAGTGGCCATGAGCAAGTGGGATGAGGGTGGCTGCATCAGCATAGCTTCTGCCACTAGGGAGGCGCTGATTGGACTGAGTTTGGATATGTTTCAGATTTTCTTTTTGCTTTTGACTCCAAGTGGACCCCAGTGCGTGCATGGTGCTATAGCACCTGATGCTGTAGCACTCAAACAAAAACATTAGAGACTTCACAAGGGCACCAATTGTGCCAAATTAATTCATTTCAGTCTTTGATTCTTTTTTCCTTGAATTAACACAGATATTCACATAATTCCTAGCCTAAGCATGCAAACTCACAAAGATTTAGGACAAAATCTGGGTTTTCCAGCAACACCAACACCAACATTCCAGAAATTTTAAAAACAATCAACAACATTCAAAATTTGGGTTTTCCAGCAACAGCAACACCAACACCGACATTCCACAAATTTTAAAAAGTAAAAACAATCAACAACATTCAAAATCTGGGTTTTCTTTCGTTTTCCAAAACATTCAACATCTTCAAACCCAGAATTTTTCCACTACGTTTTCTTTCGTTTTCCACTGCGTTTTCTGTTCGCGTTCTAAATCTGGGTTTCGCGTTCTTTTCCCACTGCGTTTTCTGTTCGCGTTCTGTTACGAAATCTGGGTTTTGAATTTGTTCGCGTTCTGTTACGAATTTGGAAGAACGAAAGAGTGAGATAAATGGAAGAACGAATCTGGGTTTTGAATCTGTTCGCGTTCTGGGGAAGATGTTTTCTGTGAAGATGAACAGAGACGAGGGGGAAGAAAATGAGATACTGGGGACCAAAATGAAACCAAAAAAAGACATAGGGGACCAAACTGAAACTAAAAGAAAAAGTAGAGGACCAAACTGAAACTAAAAGAAAACGTAGAGGACCAAACTGAAACTAAATTGAAACTGCAACTCAGATATGCATCAATGGCGAAAACCCAGAAACTCGTTGTTTTACGAAATTGATTTAGGGTTTCTTTAGATCTCTTTCTTGCGATCAAAACCCATCCAAGATCAAACAAAACGATTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCCGCCATGAAATCGCTCTTTCGTTTTGCTGTTCATATGTGGGGTTCGTTTTGCTGTTCATTTTAGGTTGCATTTTGCTGCTCATTTCGATTTCATTTTGCTGTTCATCTGGGTTTCGTTTTGCTGTTCATGTAAAACGTTTTCCAGATTTGTTGTTGAACGAAGATGAATTTTTTGTTTGATTTTTAAGTTTTTAGTTTTTTGTTAATTTATGTTGTGTTTTTAATTTTAAAAACTTAATTGCTGATGTGTAAGAATTAAATAATATATTTTTGCCACGTCATTTAATGAATTTGAGTCGCCATGTCAGCAGTTAACTGCCAGCGTGGCGTCCGTTAGAAAAAACTAACGTCATGGACTAAAGTGAAACGAAAATGAAAGATAAAGACCAAAACGGACCAAAAAAAAGATAAAGGACCAAAGTGAAACTTAGAGCAAAGATAAAGGACCAAAAGTGATATTTAGCCTTGTTTTTTTATTGACTCAACTACTCCCTCCAATTTCAAATATAACAAAAAAAAACTATGTTTACTAGTTTAAAATATAAATAAATATTAACGATTTCTATCATATTTAGAGTTCGTTTGTTACAACTTCTTTTATGAGAAAATCACTTTTTTTAATAAAAAATCATTTCGAGTGATCCTCACTGTGTTTGTTTTGACTTTTATGAAAAATAATTTTCTTAAACAAATCATTTTTATCCTTAAAATGAGAATCTGTTTTGAGTAGCTTCTCATAAAAATAATTTTTTAAAGAATAATTTTTTAAAATAAGTGATTTTCAATATGTTACGCAAAATAATTTTTTATTTTCTTAAAAATCTCTAAAAATTAATCTTTAAATTATTTAACAACAAAATCGTTTATTCTTTAATTCGTAACAAACGGGCCTTAATGTTACCATTCATAAATTGTCAAAAAAAATGTTACTATTCATAAAAAAAACCTTTTTATTAATTTAGATTTTTTAAAGTGTGATATATATATATATTCTTATATATGAAAAAAACAAAGAGAGAGGGAGTATTTGTTTCAAGAGTAGCAATAGCGTAACCCAGAGCGTGGGGTTCAGCGGTTGGGGCTGAACCTCCCTTAACCAAGGGTTGGGGGTTCGATCCTCCCATTGGATACGGAGCAGCGTTAAACTCTGGCCAGCTGTCATTAGATACATGGGTTTACCCAAAAAAGAGTAGTCATAGCGTTTCCAAAAAAAAAAAGAAGACTAGCCATAGCGTGTGTGCGTTGGTGTTGAATCGCAAATGGTTAGCTAGCCCTAACTTCAAACACAGACATTTGTAGTGGTGATCTACTCTACTCTACTCAGAGAGCCTCAGTTCCCAACTAAAACACAAACAATCACACTTCTCTCTCCACTATCAACTGCTTCCGTTCAAATTCACCTTCCTCTTCCTTCTTCAAAATCTTCACCATTTGGTTAGTGCTTCCTTTCAATTTCTATCTGCTTTTCAATGCCCTATGTCCGTTGCTTTTAGAAATTGTGATTTTCCCTTTCTTCCGAAATTTACCGTTAATTCTCAATGGTTACTATCGTTTCCATCACTTAATTAACATCACACACCGATTGTTTCTCACGCAGATATATCAGTTTTT

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01846.22	FF	562	609	5.70E-48
PF01846.22	FF	628	676	5.70E-48
PF01846.22	FF	696	744	5.70E-48
PF00397.29	WW	338	364	5.30E-14
PF00397.29	WW	389	416	5.30E-14

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0051537	2 iron, 2 sulfur cluster binding	Molecular Function
GO:0051539	4 iron, 4 sulfur cluster binding	Molecular Function
GO:0009055	electron transfer activity	Molecular Function
GO:0046872	metal ion binding	Molecular Function
GO:0016226	iron-sulfur cluster assembly	Biological Process

InterPro

InterPro term	Description
IPR036020	WW domain superfamily
IPR001202	WW domain
IPR045148	Transcription elongation regulator 1-like
IPR036517	FF domain superfamily
IPR002713	FF domain

trEMBL

trEMBL term	Description
A0A1S2YK34	_

SwissProt

SwissProt term	Description
PR40C_ARATH	Pre-mRNA-processing protein 40C

KEGG

KO	Description	Enzyme
K12824	transcription elongation regulator 1

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G19840	pre-mRNA-processing protein 40C
Medicago sativa L.	MsG0480021736.01.T01	_
Oryza sativa L.	_	_
Cucumis sativus L.	Csa010039	_
Glycyrrhiza uralensis Fisch.	Glyur000077s00006716.2	_
Codonopsis lanceolata	Cl_chr01_34140T	_
Arachis hypogaea L.	AH12G22800.2	Pre-mRNA-processing protein 40C like

Expression pattern