Gene detail

Detail information of Am05G012230.1 Annotation

Gene ID	Annotation
Am05G012230.1	glycosyl hydrolase 9C1

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G012230.1	mRNA	Chr05	93319023	93322510	+

Sequences

CDS:

>Am05G012230.1
ATGAAGAACCTGAACATTTCTTTGTGCGTGCTTTTCATAGCATTAATGCAGTTAGTTGCAAGCTTACCCTCATCATCAGGATTCAACTATGGTGATGCACTTGACAAAAGCTTGATGTTCTTTGAAGCACAAAGGTCTGGGAAACTATCACTGCAACAACAACGAGTTAAATGGCGTGGTGATTCTGGTCTCAAGGATGGAATTCAACAAGGAGTAGACTTAGTGGGAGGGTACTATGATGCAGGAGATCATGTGAAGTTTGGGTTACCAATGGCCTACAGTGTCACAATGCTTGCATGGGGAGCCATTGAGTTCAGTAAGGAAATAACAGACATAAACCAAATGGGACACACATTAGGGTCCATTAAATGGGGAACTGACTACTTTATCAAAGCACATCCTCAGCCTAATGTTCTCTGGGGACAGGTTGGTGATGGAGTTTCTGATCACTACTGCTGGGAGCGTGCCGAAGACATGACAACTTCAAGAACTGCCTACAAAATTGATGAAGAACATCCTGGCTCAGATCTTGCTGGTGAAACTGCAGCTGCATTGGCTGCTGCGGCCATAGCCTTCAAGCCTTACAACTCTTCTTACTCTAATCTTCTGCTAGTTCACGCAAAACAGCTCTTCACATTTGCAGATAGGTTTAGAGGTTTATATGATGACTCCATATCTTCTGCTCAACAATTCTATTCTTCATCCGGTTACTCAGATGAATTGTTATGGGCCGCCGCCTGGCTGCATCGAGCAACTAGCGATGAGTACTACCTAAAGTATGTAGTAGACAATGCTCAGTATATGGGTGGAATTGGCTGGGCTATGAAAGAGTTCTCTTGGGACAACAAATATGCTGGTGTGCAGATCCTCCTATCAAAGGTATTACTAGAAGGAAAAGCTGGTCCTTACACCTCTACACTAAAGCAATATCAAGCCAAAGCAGATTATTTTGCTTGCGCCTGTGTGCAAAAGAATGATGGTTACAATGTCCAGAAAACTCCAGGTGGCTTATTATATGTGCATGAATGGAACAACCTGCAATATGTGTCTTCTGCTGCATTTCTTTCAGTTGTTTATTCTAATTATCTGTCAGCTGCAAAAGCGCAGCTTAACTGTCCGGATGGACAAGTTCAGCCTCAGGAACTCCTCAATTTTGCCAAGTCACAGGCTGACTACATCCTTGGTAAAAACCCAGAGGATATGAGCTACTTGGTTGGATATGGACCAAAATATCCTGTTCATGTTCACCACAGAGGCGCTTCAATTGCTTCAATATTTTCTCTTCACTCTGGAGTTGGCTGCACACAAGGATTTGAGTCGTGGTATAACCGCCTTGAGCCAAATCCTAATGTCATTTATGGAGGCCTTGTCGGGGGGCCCGGTAAAAACGATGACTACTCCGACGACAGGTCCAATTATGAACAAACTGAGCCTACAATTTCAGGCACTGCTCCTCTTGTAGGCATCTTTGCTAAACTGCACAGCTCATATGATAACATAGGTACAAATCTTTGGAAATTAACAAAGCCTAAAAGACAAGGTACTGTTGCAGGTTCCCCAGTTGAATTCCTTCACTCACTTTCCAGCTCATGGACTGTTGGAGATACAACTTATTATCGTCACAAGGTGATTATCAAGAACATATCTATGAAGCCAATAACTGATCTTAAGCTAGAGATTGAGAATCTCTCAGGATCTTTGTGGGGTCTCTCTCCAACAGCAGAAAAGAACACCTATGAACTACCTCAATGGCTCAAAGTTTTGAATCCTGGCTCTGAGTGTATGTTTGTCTATGTTCAAGGTGGACCTCAGGCAAAAATCTCCATTCGTAGCTTCCAGTGA

Protein:

Promoter(3k):

>AM05G012230.1
GGGGCGCCTTCAAATCTTGGGTGTGTGACCAATAACTAGTCAACATTGGTGGAGATGCTCCCCCAACAGAAAAGGGATATTGATGGTACTAATTGGGAAGCATATTGAAGCAAAAGGGATAATCATGATTCGTCCCTTTAGGGCGGATAGCTCTATTATGCAATTTAAAATCAAAAAGGAGATTTTGGAGTAAAAACCAATATCATCGTGGTTATTTCTGTATTGGTTTGATTTCAACTTGTGTCATCCCAATGGGTGAAAACCAATATCATTGTGGTTCAACTTGTGTTGTCCCTTGGGTTTGATTTCAACTTTGGGGTTCCTCTATATTCAAAACCTTATCTACATAAGAACAATACGGGAATAACCACAAATTTCTGGTGTCAAATCTACATGTAGTTTAGCACAAAAAATTGTAGTTAATGAGTTGGGACACATAATAATCATTAACCAAATTCATTACTTTATTAATCAGTGTGAATTGTAACATGTAGTTTATAGATAAACTTTGGTTCTCTTTAGATGGGGAAAAGAGAATGAGTAATTGTGGACCACCTTTAATAAACCCCATGTTACAATTCACAAAGGTTAATAAAGTAGGAGGTCCCAAGTAGGTAGTTAAGTTGACGAGCTAATGGATACCGAAAGTGTACCAAATAAGTGCAAGTAGGAGATCTCGGGTTCAAACCCAGGAAACTAACATTCCCCCTCCCCTACTAACATTGTTTATAAAAATAAAATAAAAAGGTTTGACAAAGTATTGAATCTTCTCGAGCTCTTCTTGCCAACTTTTGGTTCTCTTTATATAGGAAAAAGAGAGGCCCTTGCTTTTCCCACATCCCTCCCTACTCACCTCAAACCCCCAAACCCTGCGAAATGACTAAAAGGCCATTAATGAGGCGCACTGTTTTCACCGATTCGGTTAGGGTCAACCGAACACTTTCGGTTAGGCCCAACCGAACGTGTATTTTTTTGAGACACACCCCTTTTTTACCTCTTTTACACTATTCGGTTGACATCAACCGAAATATTTCGGTTGACCTCAACCGAATCCTTTCTAACTTATTCTGGTGATATTGATTTTGTATTAGATGACTGGAAGTAGTGTCAGGGTACGAAGTAATTCTTTTTAGCTTTCACATAAAAAGAGCATGATTTAATTGGTTCCTCTATACTTACCTGACATTATTCTTGCTTTACTAGCTCAGATATCAATATTTTAGAACATCAAGAACCACCTTGTGTCGAAGTAAGAGTGAGCTCATTTGACTTTTCTTTTGGGAGAATAGGTAATAGCGATATTCATGTGATGCAAGTATAACTAGTTGCTAGATTATTGAGTTCTCCAACTGAATGTCGGACACTGGCAAAAATCTAAATGTTTGACTAAAGGTGTTAAAAAGCAGCATTTGCAATAAATAGTAGTTCGGTTGATGTCAACCAAACAGTCTGTCTGTCTATCCAGTATCAGGTGTGTTCGGTTGACATCAACCGAACAATTTCGGATCCCCTTCTCCGAACGAACAAAGCTGAACAACACATCCCTTGTTATTTTTTATAACTTTCGGTTGGCCTTAGCCGAATATATTCGGTTGACCTCAACCGAATCACATGTAAACACGTCCTCTACTTAAGGGTATTTTTGAAATATTTGGAGTTAAGGGGTGTGTAGTGAGTAGGAGGAAATGTGGGAAAAGTCAAAGCCAAAAGAGAATGACCGACTATGGTTTGTGTATTGTGGACCATAACCTTCTTTAATTATAGTGTGTTGAACCTACACAAACATATACACATATAAGGCCCACATTAATTAAAATAAAAAAAGACTAATAAGCTTACTTGATATTTAATTAGTATTTTTTTACAATAAGTTATTTAATTAATTGATCACTTAAATATTTTTTTTCAGATCATTAGGGTTACCTACGGAGTATCTCAACGCTTTCAGCAGAAGACTAATCATTGCTCGTGCTTAGAAGCAAATTTTGGATTGGCCAAACACCAAATTTGTCACTACTGGAATCAAATCTGAGAGCCCCTACTATGTCAACTAGAACAATCCTCAAAGTGGCATCACATTGACAAGACACCAAAAAAAGACACATACTATTCACCCATTTTTTTGGACGATACATACTATTCACCTTGTTTAAAGGGATATTTAGATTAAATACCTACTTTATTTAAACTTCTATTATGGCCTCAGATGCACCAACCTAGTTATTTATTTATTTATGGGTTAAATACATAAATGAGATTTTCATTTTTAGGCTTCAATAAATTTGTCTTCAAATTTTTGTCTTCACTTATATTTTTGTTTATACTTTTGGTCTCACTTATATCTTTGGTTATACTTTTAGTCTCCACTTATATATTCGTTTTTACTTTTTGATTCATACTATCGCCATGTCACACTTTTAATAACTAGGATGTTAAAACACCTTATGCGGCCAGTAATATGGTATATATCATACTCATTAAATATTAGTTTGCTGAGCACCAACTTAATATCAGAAGCGAGTAAATTGACATTCTAATCATTAAAAAGTGTGACATGATCACAGGTGCCAATGTAGCAGATTGTAATTGAGCATCAACTTCACGTTAGGACCAAAAATGCGAGCGGAGAGATATAAGTAGGGACAAAAGTTAAAAAAAAATTATTTGGGGACTAAAAATAAAAAACATGTACTCCTCCTATAGTTCAGTATCGTGTGCCTGTCATAGATAATAATTAATTATTCAGTATGCAGCTAACACATTGGCACGTCAAAACGTGGGAGCCTCTTCCTATAGTTCCTAGTACTCCCTAATGTATAATTTAAGTCAAATGTCAACCCAACGTGATGGCTACCACATTGTTGCATTCCAAAACCTTTTATTTCTTTCTTCTTCTATATAAGAACTAATATTGCAATGCATGATTCATAAGGAAAAGTGGAAAACCATAGTTAATTTATTTTATAGTGTCACATTTTCTGAACTTCCCTAACCACCATC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00759.22	Glyco_hydro_9	30	489	1.10E-147
PF09478.13	CBM49	522	600	1.20E-22

Gene family

Gene family	Subfamily
Carbohydrate-Active enzymes Family	CBM49

Gene Ontology

GO term	Description	Category
GO:0015935	small ribosomal subunit	Cellular Component
GO:0003735	structural constituent of ribosome	Molecular Function
GO:0003723	RNA binding	Molecular Function
GO:0016020	membrane	Cellular Component
GO:0006412	translation	Biological Process

InterPro

InterPro term	Description
IPR012341	Six-hairpin glycosidase-like superfamily
IPR008928	Six-hairpin glycosidase superfamily
IPR018221	Glycoside hydrolase family 9, His active site
IPR001701	Glycoside hydrolase family 9
IPR019028	Carbohydrate binding domain CBM49

trEMBL

trEMBL term	Description
G7JNJ8	_

SwissProt

SwissProt term	Description
GUN5_ARATH	Endoglucanase 5

KEGG

KO	Description	Enzyme
K01179	endoglucanase	[EC: 3.2.1.4]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G48930	glycosyl hydrolase 9C1
Medicago sativa L.	MsG0480021526.01.T01	_
Oryza sativa L.	LOC_Os04g57860.1	endoglucanase precursor, putative, expressed
Cucumis sativus L.	Csa020346	_
Glycyrrhiza uralensis Fisch.	Glyur001149s00024731.1	_
Codonopsis lanceolata	Cl_C09536_unscaffolded_00010T	_
Arachis hypogaea L.	AH03G05390.1	Endoglucanase 5 like

Expression pattern