Gene detail

Detail information of Am05G011660.1 Annotation

Gene ID	Annotation
Am05G011660.1	scarecrow-like 3

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G011660.1	mRNA	Chr05	91017437	91019830	-

Sequences

CDS:

>Am05G011660.1
ATGTCAGTTTCATCACCTAGCTTAGGATCTTCACATCCATGGCTTAAAGAACTGAAATTTGAAGAAAGGGGTTTATACTTGATCCATTTGTTACTCACTTGTGCAAATCATGTAGCTGCTGGTAATCTTGAAAATGCAAACACCACACTTGAGCAAATTTCCCTTCTTGCTTCACCTGATGGTGATACTATGCAACGAATTTCGGCGTATTTCACCGAAGCACTTGCTGATAGGATACTCAAAACATGGCCTGGACTTTATAAAGCCCTAAACTCGACGAAAATGGTTATGGTTTCGGAGGAAATACTTGTGAATAAACTCTTCTTTGAGCTTTTTCCTTTCTTGAAAGTAGCATTTATTCTTACAAATCAAGCTATCATTGAAGCAATGGAAGGAGAGAAAATGATTCATATTATTGATCTCAATGCTGCTGAATCTGCTCAATGGATCACACTCCTTCAAGCGTTAAGTGCACGTCCCGAAGGCCCTCCTCATTTGAGAATCACCGGTATTCATCAGAAGAAAGAGATTCTTGATCAAATCGCTCATCGACTCACTGAAGAAGCTGAAAAGTTGGATATACCATTTCAGTTCAATCCTGTAGTCAGCAAATTAGAAAACCTCGACTTCGATAAACTTCGCGTCAAAACTGGGGAGGCTCTAGCAATAAACTCTATTCTCCAATTACATACCCTTTTAGCCTTAGATGATGAAACCTTACAGAGAAAATCAAAATCTCCTCTTCTATCAAAAAGCTCAAATGGCAATGGCAATGGCAATGGCATTCACTTGCAAAGAGTCTTGCCAATAAACCAAAGCACATTAGGTGATTTACTTGAGAAAGATACGATTAATGGTCCTGATTCATCACCATCATCATCACCTTCAAATTCAATGAAAATGGATAGCTTTCTAAATGCCTTATGGGGATTATCACCAAAAATCATGGTTGTTACAGAACAAGATTCAAATCATAATGGCTTAACTCTAATGGAAAGGCTACTAGAAGCTCTATATTCTTATGCAGCATTATTTGATTGTTTAGAATCTACTGTCTCAAGAACTTCATTAGAGAGATTAAGAGTAGAGAAGATGCTATTTGGTGAGGAAATCAAGAACATTATTGCATGTGAAGGGTATGAAAGGAAGGAAAGACATGAAAGGTTGGATAAGTGGTTTATGAGATTTGATTTAGCTGGATTTAGTAATGTTCCTTTGAGTTATCTTGGTATGGTTCAAGCTAAAAGGTTTTTGCAGAGTTATGGTTGTGAGGGATATAGAATGAGAGAGGAAAAGGGTAGTGTTGTAATTTGTTGGCAGGATAGGTCTTTGTTTTCTATATCAGCTTGGAGATCTAGGAAATGA

Protein:

Promoter(3k):

>AM05G011660.1
TAGCAGTAATGAAAAACAAGAGAGAGGGTGTTGATGGGGAAGATAGGAAACGGAGAAGATGAGGAATAATGTAAAATATTGAAAAACAAAAAATAATGATTTGGCATACAACTCAGCATTAAAAAAAATTAGAAAAGAATAAAAAAATTACAAGTCAGACACGTCAGCATTTTTTGTAACAGTGGGTTAACAGAAGGACCTTTTTAAAAAAAGTTGTTTTTGCAAGGTGTTTTTTTTTAAAAAAAATTTTGTAGGGGGTAAAAGCAAAACACCCCCTATTTGCAGGGAGTAAAAACGTATTTAAACCAAATTTAAATAAAAAAGAATTATTTTTTAATACACAACGAATTTACCTATTTGTTAGATAAATTCGTTTTGAATATTTTCAGAACAGATTTATTTAATAAGTAGATAAATCTGTTATTATAAATTTACAAACGGAATTATGTGTTGCTTAGGTAAATCCGGTTTGGAAAAACATAAAAACGGAATTAGGTAAATCGTTTTTTTCTAAACGGATTTATCTAATTTAAAGATAAATCCGTTTTGGAAAAAACACTAAAACGGATTTATCTTTAAATTAGATAAATCCGTGCGAAGAAATTTGTAGGGGCATTCTGAGAATAACAAATTTTGTAGGGGTATAGAGAGATATGGTGGGGGTAAAAAAAAAACCTAAAGCTAAATTGTATTTAGCGTGTATCCAAAAAAAATTGTATTTAGCGTGAAAAATAAATTTACACATAAACTTTCCTTATTAACAACGTTGGACAACCGAGTCTAATGTGACTTGGAAAAATGAGTAAATATTCAAATTAAGCATGGACATATGTAAAATACTTAACACTTATTTAGTTGAATAACTAAATATATAGTTGCTTAAGATTTTTGTGGGCACTGGCAAAGGATTTATGTAACTCAAATAATCTAACTAGTTTTTCCTCTAATAGTGGTTAAAGACGGATCATAGATGTATTTTGGCAAAGAGTAGGGGAAAATGTTTCCACTAACATTTCACTCATGTTTATACTATTCATATATTTTTAGTTATTTCTATAGAGAAATTTGTGAGAATATTAACAATGAAAATATATCATTCAGTATATTCATAAAATAAAAAATTGTAGAGAGCAATTGTGATGTACTCTCCCCTAGCAAGATATAAGCAAAGTATACTCATCTAAATTGTAACAAAATATAAGCAAAAATTGTAACAAAGCATATGAAAAATGTTATTCATATAATGCTGAATATTTAGTGTTAAGAAAAATTAGAGACTTTTTTTATGCAATTAAACGAGACGAGAGATAATAATGTTGAATTTTTAAATGAAATTAACATGAATAGACATGAATAACTACTTATCTTCTCAATTATAATAGAAAGTTGAGGCACAAAACTCAGACCCCAATAGTAATAGCATCGAAAGAACTATAAGTACTATGTAAGTAGTTTATTTTACTTATATTTTGTTACTAAAAGAGTATATATGATTATTGCTCTAACTATTTAAATATTTTAGATCTGTTAGTTATATTTAAGTAAGAGTGCTACTATTTCTAGAGAGAAACTTTTCCCGAAAATGACCCACGAACTGACGTGTCAAACTCTTAAGAAACGGATTTGCGAAAATTATGGCTGGATAAAAAACATGGAAGGCATATATCAGTACACAATAACACACCACGTCACTCGTGGGTCTGGCTACGAAACTCATTTCCCGGCATTCAACATTATCCATACTTGACCCCATATATTGAAATTTTGATCCTATATATATTTTTTTTGTCGTGTTGAAAGAGAATTAATTATACCTTATTTATAAGATATTCATACTTCACCTATATATTTTTATGATATGAATATAGTATTTTTGTATTTCTCATACAACAAATGGTTTAGGTGGGTTTTTGTCAGGATACTGATTTGAGTATTTATTTATTTATTAGTAAAAGATAAAGGGAAATGACGTTCTAGATAGAGAAGTTATACAAGGCACATCATCTTCTAAAAAAATTCCATATTCCACTGAGTTAATGAAGGACAACAAAACAATAAAGACAAAAGGGACCCTTCACGCTTTGTCGCCAGCGTAGCCATGAAAGAACAAGTCCTTTTGAAACCAGAACAGAACAAATAGTCCAAACATTAAAACTCACTCTATAACACTAAACTCAGCAAACCAACCAACCCATTTCAGTTCTGGTTTTTCAGAGTGTTTCAAGGGGAAAGCTTTGGAATTTTCTTGGGGCTTCTTCTGGATTATTCTTCAATTTCAAAACCCATCAAGGAATTAGCGTTTCATTATCTATCTACTTCTGCTGCCATTCCTTGCTGACATGGTTTTGGTAGGTTTTTTTTTTTCCTTTTCTTCTTCTAACTGCTTCTTCCATGTTTTGTTCCATAATTTTTTTTCTGAATTGATGGAAAGTGTTTTTCTGATCAAAGTTCTGAACTTGGATTGTAATTTGTAAAGCTTCTTGCAATCAAATCCCATCTTTTTCTTCTTTTTTTTTTTTGCTTGTGCTACTTTGTTTTGCTTATGAGGTTTTCATTAGTCAACTGCAGATTCTTCTTAATTTTAGTACATTTTGTGCTTTGAATTTGTGTTTTCTTCTTCATGAAGTATTCATTGGGTTCTTCAAATCAAAATCATCCCATTTGTTGTGTAAGGTGAGATTTTCATCTAAATGAGCTTAAAATGTTAATTCCATTATTGTTTTTAACTCTCTAGCACCGACACTTAAGTTTGAAGACCGACACAGACACTTCAATACACTTCAATTATTATTATCGGTGTCTCCATGTCTATCAATGTTGTGTCCTGTGTCCGTTTAGGTGCTTCATAGATTTTTACATGAAAAAATTTATGCGATAATCATCACTTTGTTTTGGTCATTTCCAAATTCCTGAGATTGTTGTTATTGTTGTTACATAGGATTTATGTTACAAGTAGGGTCATCTTCTGTAACATCTTCATCCTAGAAGTTCTTCTCCAAG

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF03514.17	GRAS	27	451	2.00E-139

Gene family

Gene family	Subfamily
Transcription Factors Family	GRAS

Gene Ontology

GO term	Description	Category
GO:0043565	sequence-specific DNA binding	Molecular Function
GO:0005634	nucleus	Cellular Component
GO:0003700	DNA-binding transcription factor activity	Molecular Function
GO:0006355	regulation of DNA-templated transcription	Biological Process
GO:0009610	response to symbiotic fungus	Biological Process

InterPro

InterPro term	Description
IPR005202	Transcription factor GRAS

trEMBL

trEMBL term	Description
A0AAN9PVW3	_

SwissProt

SwissProt term	Description
SCL3_ARATH	Scarecrow-like protein 3

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT1G50420	scarecrow-like 3
Medicago sativa L.	MsG0580024328.01.T01	_
Oryza sativa L.	LOC_Os01g71970.1	GRAS family transcription factor containing protein, expressed
Cucumis sativus L.	Csa010719	_
Glycyrrhiza uralensis Fisch.	Glyur000167s00012265.1	_
Codonopsis lanceolata	Cl_chr06_01650T	_
Arachis hypogaea L.	AH15G06800.1	Scarecrow-like protein 3 like

Expression pattern