Gene detail

Detail information of Am05G011530.1 Annotation

Gene ID	Annotation
Am05G011530.1	hydroxymethylbilane synthase

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G011530.1	mRNA	Chr05	90199283	90202024	-

Sequences

CDS:

>Am05G011530.1
ATGGAGAAGACCCTTTACTCCTCTTCCCTATTAACCCTTCCCTCGGTACCTTCCAATCCTTCCCTTTCTCTTCTCAGCTCTGCGTTGCCTTTCCCACCTTTCAAAACCTCGCCTTTCTCCAAATGTCGCATCAGAGCCTCCGTTGCCGTTGAGCAACAAACCCACCAAGCCAAAACCGCGCTTCTCAGAATTGGTACCAGAGGAAGTCCACTAGCTCTTGCTCAGGCACACGAGACAAGGGACAAACTCATGGCATCACATCCGGAGCTAGCTGAAGAAGGAGCTATTGAGATTATAATAATAAAAACAACCGGCGATAAAATACTGTCTCAACCGCTTGCAGACATAGGTGGGAAGGGCTTGTTCACTAAAGAAATAGACGAGGCACTCATAAATGGGGACATTGACATTGCTGTTCATTCAATGAAAGATGTTCCTACTTACTTACCTGATAAAACAATTTTACCATGTAACCTTCCACGTGAGGATGTTCGAGATGCATTTATATCCTTGAGTGCAGCTTCACTAGCTGATCTACCTCCTGGAAGTGTTGTTGGTACTGCTTCACTTAGACGGAAGTCACAGATACTCCACAGATATCCATCTCTAAATGTTCAGGATAATTTCCGTGGCAATGTCCAAACAAGGCTGAGAAAACTCAGCGAGGGTGTAGTCCAAGCTACTCTATTGGCTTTAGCTGGACTAAAACGATTAAGTATGACAGAAAATGTAACTGCGACCCTATCAATTGATGATATGCTTCCAGCTGTTGCCCAAGGTGCCATTGGAATAGCCTGTAGAAGTAATGATGATAAAATGGCAGAATATCTTGCTTCGCTGAATCACGAAGAAACAAGACTAGCAGTTTCCTGCGAAAGAGCCTTCCTTACGACTTTAGACGGATCTTGCCGCACTCCTATTGCGGGCTATGCTAGCAGAACCGAGGATGGCAATTGCTTGTTTAGAGGATTAGTAGCTTCCCCCGACGGAACCCGTGTGCTTGAAACTTCTAGAGTTGGTCTTTATGCTTTTGAAGATATGATGAAGATGGGTAAGGATGCTGGGGAAGAGCTTCTTTCTAGGGCTGGTCCTGGCTTTTTCAATAGTTAA

Protein:

Promoter(3k):

>AM05G011530.1
GAAGCTAAACTTGGCGGACCTGTCCAATACAGATGGATGTATCCGTTTGAAAGGTCAGCTAATTTTTAATTATAATATAAGAAACAAGTTTAAATTAAAATATATGACTATTATATTAATATCATATTCTCTAGGTTCATGGGTGATTCAAAAAGTTCGGTGAAAAACAAAGCTAGAGTTGAAGGATCGATATGTTCTTCTTACCTACACCGTGAAACAACACATTTTTGTTCTCATTATTTCAAGAATCAGTTTGCTCCTGGAAGCAGTCGAAATGAAGTGGATACCGAATGGCGACATCCTCAGGCGATTCGGGATCGAAGTGAACGGGAAATTCAGGCGATTCGGGAGCAGGCTAGGGTAGCTGAGGAGCGCATGGAGGAGCGCTTTAAGTTCTTGCAGGATCAGATGGTGTCTCAGCACTCGAGGCCATCCTCATCAGCATCCTACCTGCCGCCGCCACAGCAGCATTACTACCAGCAGCAGTATGCACCCCAGTATCCCCCGCCGTATGCATCCCAATATCCCCCGCAGTATACACCGCAGTATGCGCCGCCATTCCAGTCATACCAGCAGCAACATCAGTCACCCCGCCAGCCATACCAGCAGCCCCAACATCAGTCACCCCTGATCCAGCCAAACCAGCAGTACCCCCAGCAGCGGTCATCCCCGCTGGACATTGATCTTAATGTCCAAATGTCATCGCTCAGTGCTTTACTTCAAGATGATACATATTATAATAATGTTGATGACATTGACCGGCAGGCACCCCAGTAGCTTTAGATTATTTTATTTTTTTGTCTGGATATTTTATTAATTGTCTGGATATTTTATTAGTTGTATGGATATTTTTACTGCTTTTCCCAATTTTTATTTTTTTAAATTAAAAATTAATTAGTTATTGGATTTTATTTTTTTATCAATAATTAAAAAAATTAATAAAATAATATATATTTTTAATTAAAACGATTTTTTTAAAAAAATAAAATTTATTTTTAAAAATAATAATAATTTTTTTTTAAAAAAAATGGTACTTTGCGGCGGATTTGTGTCGTTTGCGGCGGAATTTTAAATAAAACGTTTTTTTAAAAAAATTATATTCATTTTTTTTTTAAAATAAAACGGGTGTTTTGCGGCGGATAACGGGTACTTTGCGGCGGATAATTTGCGGCGGATATTGGGCACTTTCCGGCGGATATATTGCGTCAAAAATTTGTCCCCTTTTCCGGCGGATTATCCGCCGCAAATTTGCGGTGGATTTTGCGGCGCCACTAAATCCGCCGCAACGCGTTTGCTTCGAGCTGGCTATCGGCGAAAAAATTCCGCCACAAAGTCCAAATATCCGCCGCAAATTTGGCTTTTGCGGCGGATTTTGCCCGCCGCAAAGTCCAACTTTTCTTGTAGTGACCATATCATTTGGGTTTAGTAACTGTGGACCAAGAAATAATGTGATACTTGCAATGGTCATTCTCCTAAAGGCACGACTGAGGCACCACATAGGACATCATAGGATAAAGAGAAAGAGCTTCAATAATAGCCTTAGAGAGGGTCACGAACCTAACAAAAGAAAACTTCTTTGACTTCCAACTAGCCAATCTATTTTTGACCATTTCTACAAGATAATCAAAATCGACTCTTCTAGGCTCCATCTCCATCAAAGGCACACCAGTATACTTACCCAAGGAGTGCACTTCCCAGAACCCAGATTCATCAACCAAGCGCCTACGCATATTAGTAGAACGCCCCTAGAAAATAACATAGAAGTTTTTTCTATATTGACTTCTTGATAAACCAGACATATCAGAAAATTTATCTAGAGTAAATTTTATGCACCAGGGTTGAGCATTAGTAGCATGCCCAAACAAGAGAAGATCATCTGCGAACACCAGATGAGAAACATTGGGATGATCTTTAGGGAAAAAAGTATTCTGGTTACCATTTCATAGCACATTAGTTTGGACACCCATAATAGAAGCTATAACAATATCCACCAAAGAAACTGAAAGGCCCACGTCACGAAGGAACATCAAAATAAAAGATCATTTCAATCTATCATAAGCCTTAGTCAAAACAACTTTAATAACAACACCTCCTCTCTAGCCTTGCATACGTCTCCTGGTATGGACAAGGTCTTAGACAACCACAATGTTCTCATAAATATTCCTCGCAAAGATAAAACCTGATTGGAATGCATTTGACTGAAATGGAATGAAGTTCATTTCATAGTAACCTCTTGTTTTTGAATGGTACCGACTCCAATGTGAATCATTAAAATAAATTTAAAGGACAAAAAATGTATTATACAAGTAAGGGACATAAACCCTCTCATTACAAGTATCGTAGATTAGTACTTGCAGTCATTATGACTTTTATCGGAATTGGATCTCCTCCTGCCCTTTCTCTCATGCTTCTATTCTACCTTAAATCTCAACAGACCAGACACCTTTTTTCTCTCTCTTTTGTACTACTTTTTTTTAGTCAATCAACCATTGGATTGGAAAAAGAAGAGATGGGTGAATAAAAAGGATCTGAAATCAGTGTAGCCGAAACGTTGTGTATTCATGCATTCAGTGAATATTGGTCATTCAATTTTAACCAGACGATCTATATTTTAACAAAATATTTTATATCCATTTTAAAGTTAAAAATATAAATCTTTTGATTAAAATTGGAGATCTGCCGAATGCAAAAAAATTCGACCGCACCAGATCTGAATCCGAATAAAAAGGGACGGACCGGATCCAAATCCATTTTTACCCAAGGAGTTAGTAGGTTTTTAACAGACATAACAAGAATTTTTTCACAGACAGAATCTAATTGCTTGGGATGATCCAAGAGTTAGAAATTCGATATTCAATGTAATTGGGTAGGGTGGGGACCACATGCTCTATCTTTTAGAGATCGTATATCGCATTCATATGATATCAAATTCAATGGCAACTCACTTCGTCTCCGAACTGTGAACTACGACACACTCTTTTTCTTCCCTCTCTCTCTGAA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF01379.23	Porphobil_deam	62	274	1.40E-76
PF03900.18	Porphobil_deamC	287	359	3.50E-15

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0043231	intracellular membrane-bounded organelle	Cellular Component
GO:0042168	heme metabolic process	Biological Process
GO:0046148	pigment biosynthetic process	Biological Process
GO:1900865	chloroplast RNA modification	Biological Process
GO:0015994	chlorophyll metabolic process	Biological Process

InterPro

InterPro term	Description
IPR022417	Porphobilinogen deaminase, N-terminal
IPR022419	Porphobilinogen deaminase, dipyrromethane cofactor binding site
IPR036803	Porphobilinogen deaminase, C-terminal domain superfamily
IPR022418	Porphobilinogen deaminase, C-terminal
IPR000860	Porphobilinogen deaminase

trEMBL

trEMBL term	Description
A0A1S2YJX9	_

SwissProt

SwissProt term	Description
HEM3_PEA	Porphobilinogen deaminase, chloroplastic

KEGG

KO	Description	Enzyme
K01749	hydroxymethylbilane synthase	[EC: 2.5.1.61]

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G08280	hydroxymethylbilane synthase
Medicago sativa L.	MsG0480021803.01.T01	_
Oryza sativa L.	LOC_Os02g07230.1	porphobilinogen deaminase, chloroplast precursor, putative, expressed
Cucumis sativus L.	Csa020330	_
Glycyrrhiza uralensis Fisch.	Glyur000167s00012282.1	_
Codonopsis lanceolata	Cl_chr04_51560T	_
Arachis hypogaea L.	AH03G08240.1	Porphobilinogen deaminase, chloroplastic like

Expression pattern