Gene detail

Detail information of Am05G011230.1 Annotation

Gene ID	Annotation
Am05G011230.1	ADP-ribosylation factor B1B

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G011230.1	mRNA	Chr05	88879820	88887637	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM05G011230.1
CTCATGGCTTCCTCCCTCGCCTCTTCAACTCCATGGCTTCCTTTTCATTTTCATTTTTAATTTCAGATTTCATTTTCGATTTTCGATTTCAATGGCTTCGTTCCTTTCTTCCACCAGATCCTACTTCATCTTCCTTCTTTACGTTTCCAGATCCTTCCTTTTCGTTTACAAATCCTTCCTTTTCTCTCTGTTTCCAGATCCTACTTCATCTTCCTTTTCTCTCATTTTCCAGATCCTTCCTTTTCTTCGTTCCCAGATCGAAACCTAAACGAAGCGAAGTGAACTGAAAACGGAAACTGAAACCTAGATCTGGTCTAAAAGGAATCAAAAGCTAACCCAATCAAAAACCCATAGATGCATTTTAATCCAAAACGAAACCCAGATTTGGGCAAAAACGAATCAAAAGCCAAACGGATCAAAAACCCAGATCAACGTTTTAATCTGAAACGAAAACGCGAGCGGTTGCGATGAAGAGAAGCGAAGATGAAATCGAAGAAAAAATGGAATCAAAGATGAAACTGTAAACAAAATTGAAGATGAAATCTGAAGAAAATCGAAGATGAAATCTGTAAGCAAAAATGGAACAAAATCTGTAATGGAATCTGAAGAAATCTGAAGAAAAAATGGGTTGAAGACGGAGAGAAGATGAAGAGAAGAGATTATGGGTTGAAGAGAGAAGATGAAGAGATGTGTTTGTGGGTAGAAGAGAAAGATGAAGAGATGCATGTTTCTGGGTTGAAGAAACTCAGATGACAAAAAAAATTAATTAAATTAAATAATGAGTAAGCAATTGCATAAATAAAAAACACGTGTCTGCATACGTGTAATGACACATCACCTACAAATGCTGCCACATCATCAAAACATAACGGTGTCAAAACTAAACTAACAGCAGGGACTAAAGGAGTAACGTTTGGTAATTGCAGGGACTATTTTAAAAGTTTTGAAATTGCAGGGACTAAACTGGATTTTCTTGACAATTGCAGGGACTAAAAGTACCTTTAAGCCTTTCAATAATAATAAAGGACGTAACATTAAATAAGTTATAAATTGTGCAAAACGGGTTATACAATTACTAGGTAACCCTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAAAATAACGGGTTATACAAGTTTAGTTATAAAGTGATTTCAATAATTTTTTTTGTGATCCCAAAAAACTAGTAATTGTATAACCCGTTTTGCACAATTACTAGGTAACATTAATATCTCATTGCAAATTTTGAGTTTTATCAATCCATCCATCGAACATTGACATATCATTTTAATGAGCATGTGTATGAAATTTAACCTAAACTTGTAGCTTATCGTGCACAATGTGAATCTTAGTTAGCCCATTAATCCTTTAACTTATATAGACACAAGCCTTAAACATACTAACAGACCAAACTAAACTTTCAAATAACCTAGGTCAAGACATAGAACAAAGCCGGCGATTGATAAACTTTCAAATATTAGATCGATTGAACCTTTTTTTTGGTTATCATGTCATTGATGCGTAGTTTCCACCGGCTTTGCCGATGACTAATCTACGCCGGGAAAACTGGCTGGCCACGAGTTTTCGATTTTGCCGGCTCGTGTAGTTCTTCCCTCTTAACAAAGTTTTTAGATCGACTGAACCTGTTTCATTTCCTTAATATTTTTTGATTGGTCATATTTTTTAATAATCGTTTTAACCGGTTGTTTTTACAATGGTGGTTCTAAATTCTAATTAAAACAACATTAAAAGAATTTATTAGATTTTCACTAATCAGTAAAATAACTATTAAAAAGGTCAATAAAATAACTATTAAAAAGGAACTAGTAAAAAATTACTAAAAAACCAGCAAAAGGCTATTAAGAAAATAACCGGAAAAAAAACTTGTAAAAAATAATAAAATTTTTTGTAGTAAAAACTTTAGTAAAAAAATTATTGGGCAAAATAACTATAACAATATTTAAAAAAAATAACAGTAAAAAATTATAAAAATTATTAAAAAAAGTCAAAAAAAATTATTTTAAAAAATAACAATAAAATATGACATGACAAAAGATTTGACATCTCAGTCTTTAAAAATAATGATGTCATCTGTGCCAATGTGACATTTTGTTAGTCACCTAAGCACACTTAACAACAACTAAACTGTATAGACCAAAAATACAAACAAAAATATAAGTAGTATTAAAAGTAAAAAAAAATTGTTGATGACAAAAATTGGAAATCTCGTAGTTTATAAGACTTACGAACATATTTAACTCAAGAAAATATTAATCACGTCTTATAACAATTTTAATATTGAATATTGATATTAATATAATTGAACATATATTTTTTATCAATAGACAGAGCGACAAGTACAACTCATAAATTTACATAGGCAAAGTGGAAATGTTTGAAGGTGAGTAACACGAAAGTATCCAACCTAACAACTAGGTGTGCTAATTAAATGTATATTTATTGACTAAAGGTTTTCGACCCTACTCTGGTGTCTAGTAAAAAGAGGTACATCATGAAATTAAATTTTGCAAATTTATAAAAGAATTCTATTCTCTTTTTTTGAGGATAGGAAGGACATATTCCTCTTATTTTATCTTATTTCTTCAAATTTTTTTTTGGTGGAAAATCTTATTTCTTCAAATGTTAATACAATATTACTATATGTGAATTTTTTTAAGAATAATGTTACAATTGGTCAAAAAAAGAATAAGGTTACAAAAAAACGAAAAGGTGAAGAAGTATCCATTCTATTTTTCTGCATTTTTTTATCAAATTGATTTTTCCAAATCAAACGCAAGTAGGAAGGAAGAAGAAAGGAAAGCCGAAGACAAACGCAATTGAATACAATTTCTTTCTTTTCTCTTCCATTCCCTTTGCAATTTAAACTTTCATTTTGTGTTTTTGTGATTAGAAATCGCATAATCAACCAAGCTTCGATTTGATTTTGATCGCATCAC

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00025.24	Arf	6	176	8.80E-70
PF08477.16	Roc	19	129	2.50E-13
PF00503.23	G-alpha	45	130	1.20E-12
PF00071.25	Ras	19	132	7.10E-12
PF09439.13	SRPRB	17	139	2.90E-10
PF04670.15	Gtr1_RagA	20	135	7.00E-09

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0003924	GTPase activity	Molecular Function
GO:0005794	Golgi apparatus	Cellular Component
GO:0016192	vesicle-mediated transport	Biological Process
GO:0005525	GTP binding	Molecular Function
GO:0006886	intracellular protein transport	Biological Process

InterPro

InterPro term	Description
IPR005225	Small GTP-binding protein domain
IPR006689	Small GTPase superfamily, ARF/SAR type
IPR024156	Small GTPase superfamily, ARF type
IPR027417	P-loop containing nucleoside triphosphate hydrolase
IPR045872	ADP-ribosylation factor 1-5

trEMBL

trEMBL term	Description
A0A1S2YJV4	_

SwissProt

SwissProt term	Description
ARF1_LOCMI	ADP-ribosylation factor 1

KEGG

KO	Description	Enzyme
--	--	--

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT5G17060	ADP-ribosylation factor B1B
Medicago sativa L.	MsG0480021842.01.T01	_
Oryza sativa L.	LOC_Os02g47110.2	ADP-ribosylation factor, putative, expressed
Cucumis sativus L.	Csa012507	_
Glycyrrhiza uralensis Fisch.	Glyur000216s00014140.2	_
Codonopsis lanceolata	Cl_chr02_24320T	_
Arachis hypogaea L.	AH13G11200.1	ADP-ribosylation factor like

Expression pattern