| Gene ID | Annotation |
|---|---|
| Am05G010440.1 | DNA topoisomerase 1 beta |
| Network Category | Relationship Type | |
|---|---|---|
| Global Network | Protein-Protein interaction + Coexpression Positive and Negative | |
| Top300 PCC | Coexpression Positive | Coexpression Negative |
| Gene | Type | Chr | Start | End | Strand |
|---|---|---|---|---|---|
| Am05G010440.1 | mRNA | Chr05 | 83254970 | 83263972 | + |
| CDS: |
| Protein: |
| Promoter(3k): |
| Pfam accession | Pfam name | Protein start | Protein end | E-value |
|---|---|---|---|---|
| PF02919.18 | Topoisom_I_N | 395 | 606 | 1.90E-93 |
| PF01028.23 | Topoisom_I | 609 | 834 | 8.30E-92 |
| PF14370.9 | Topo_C_assoc | 870 | 938 | 2.70E-36 |
| Gene family | Subfamily |
|---|---|
| -- | -- |
| GO term | Description | Category |
|---|---|---|
| GO:0005730 | nucleolus | Cellular Component |
| GO:0007059 | chromosome segregation | Biological Process |
| GO:0003677 | DNA binding | Molecular Function |
| GO:0006260 | DNA replication | Biological Process |
| GO:0016491 | oxidoreductase activity | Molecular Function |
| InterPro term | Description |
|---|---|
| IPR025834 | Topoisomerase I C-terminal domain |
| IPR013499 | DNA topoisomerase I, eukaryotic-type |
| IPR013030 | DNA topoisomerase I, DNA binding, N-terminal domain 2 |
| IPR013034 | DNA topoisomerase I, DNA binding, N-terminal domain 1 |
| IPR036202 | DNA topoisomerase I, DNA binding, eukaryotic-type, N-terminal domain superfamily |
| IPR008336 | DNA topoisomerase I, DNA binding, eukaryotic-type |
| IPR013500 | DNA topoisomerase I, catalytic core, eukaryotic-type |
| IPR014711 | DNA topoisomerase I, catalytic core, alpha-helical subdomain, eukaryotic-type |
| IPR014727 | DNA topoisomerase I, catalytic core, alpha/beta subdomain |
| IPR018521 | DNA topoisomerase I, active site |
| IPR001631 | DNA topoisomerase I |
| IPR011010 | DNA breaking-rejoining enzyme, catalytic core |
| trEMBL term | Description |
|---|---|
| A0A8B8LBG4 | _ |
| SwissProt term | Description |
|---|---|
| TOP1B_ARATH | DNA topoisomerase 1 beta |
| KO | Description | Enzyme |
|---|---|---|
| K03163 | DNA topoisomerase I | [EC: 5.6.2.1] |
| Species | Gene ID | Annotation |
|---|---|---|
| Arabidopsis thaliana | AT5G55310 | DNA topoisomerase 1 beta |
| Medicago sativa L. | MsG0080048353.01.T01 | _ |
| Oryza sativa L. | LOC_Os08g05840.1 | DNA topoisomerase 1, putative, expressed |
| Cucumis sativus L. | Csa020130 | _ |
| Glycyrrhiza uralensis Fisch. | Glyur001306s00030545.2 | _ |
| Codonopsis lanceolata | Cl_chr06_13790T | _ |
| Arachis hypogaea L. | AH03G09250.1 | DNA topoisomerase 1 like |