Gene detail

Detail information of Am05G009000.1 Annotation

Gene ID	Annotation
Am05G009000.1	Ribosomal protein S10p/S20e family protein

Network

Network Category	Relationship Type
Global Network	Protein-Protein interaction + Coexpression Positive and Negative
Top300 PCC	Coexpression Positive	Coexpression Negative

Location (JBrowse)

Gene	Type	Chr	Start	End	Strand
Am05G009000.1	mRNA	Chr05	75662206	75664103	+

Sequences

CDS:

Protein:

Promoter(3k):

>AM05G009000.1
GGGCGCTACCTGATGCTGCCATGGCGCCCTGCCAGGCGCCCTCATGGGCGCCGTCTGATGTTGCCATGCGCCCTGCCAGGCGCCCTCATGAGTGTCAGGTTGGACATGTCCTTAGCACTCTGTTGGTCTTCCTGATGCAGCATAGCTTGAGTGCAATTGGCCAGGAGATCCAAAAGCTGACTCACATTCGAGGGCTGGGAAGACTGACTGGTGCCCTTGTTAGGCAGGCTGGCGACGTTGTCCTCGTTAGGCAGGCTGACGACGTTGCCCTCATTTAGGCAGGCTGACGACGTTGCCCTCTTTAGGCAGGCTGACGACGTTGCCCTCTTTAGGCAGGCTGGCGACGTTGCCCTCATTAGGCAGGCTGTCGACGTTGCCCTCAGGGGTATCCTCTGGTCGGGGTGCAGGTATGGTAATGCTTTGAACCCGGGGTCTGCCTCTAGGAGCCATGGAGTAGCAAGAGAAAAGTTCGAGTAGTGATGATGTGAAAGATAGATATCTCCCACTGTGGTCGCCAATGTTCTGTACCTAGCAGTATTTTGGTCGGCTGCTGTTGGTAGGTCTCTTGCTGCCCTGGCAGGAGGTCAGTGAGCGCCCGGGGGGGGGGGGGGGGGGGGTACCTGCAAAGCCACTCCGACGCTCAAGTCAGTATGAGAATAAACTAGTGAATTTGCAAGGGAAGAGTGTGTACCGTATAAATGGCTATACGAGCCGGTATTTATAGGAAATCGACGCTCGTCTGTGGATCGTCGGATCAGTGGAGGCGATTTGAACCCTCCAAGCGTATTGGGCTTGTATGTTGTGGATATGGGCCGAATCGATTGTGCTGATCCATTTTCAATTGCTAAACGCACCCCCTGGTTTTGCTAATGGACCTCTTGGTCCAGTCCAGAACATATTTAAAGTTAATTTTGCTTCAAATTACAATACTAGTTTATTAATTTTAATTAATACCTAAATATATGCTTTTTAAAAGTAATCCCTATATATATATATATATGTATGTATGCGTGTCTGTATAATAAATAATAAATATTGGCCTCTGCCACACTTTTACGTATAAAAATAACGTACGCATAGAAAAAAAAGCCCAGAAAAATAAAATAAAATCACAATAAAATGAGTTCTTTTTTTTTTTTCTTACAAATAATAAAGAAAACCACACAAAGCAAAAAGAAAACAAAGAGAAAAAAAAAAGGAGGATCGTATCCCACTAAACACTACTCTGTTAGCATATGTTTGTTAGATGAACCAAAAGCTCTGTAGGGTATGAGTCAAGCTCGACCAAATCGTGAGATCCTTTTTCCCCATCTTGGTTAGAAAATTTGCACAACCATTCACTACAAAAAAACGCATTTTTTTGGCAGATTTTTCCTGTCGGTACAGTTCCGGCGGAAATTTGGCATTTTCGACGGATTTTTTTCCTTCCGTACGTTTCCAACGGATTTTATCTTTTTTAAATCCGCAGGAAATGTTACGGGCGGATTTTTAACATTTTCGGTGGATTTTTTGAAAAAAAAATCGGCTAATTTTTTTTAAGAAATATTTTTTTTTTCAAAATAAATGCACCGGTAATTTAAAAAATCCGCCGGAAAAATTCGGAGGGAAAAAATCCGCGGAACCGTCCGAAAATGCCTATAAATAAAACTTTCTTCTACACTCTTCTCATTCTCTCATTTTAGTCTTTATTTTCTTCTCATTCTCTTCTACATTTTACCTATCTTATCTTTCTTATTCTTTCTCATACTCTCCAATCTCCATAAATTTCTCTACATATATCTCTTCTATATATCTCCCTTTCTTCTTCCTTCTCATTCATTCTCACTCATTCATTCTATATATCTCTTAAAAATTTAAATAATTTTTTTTATTAATAACAAAATTGGATTTATCTTAGGTGGGGTAAATCCGATTGTCTTTTTTTAGGAAAATCGGATTTAGGTAAATCCGATTTTAAAAATAACAAAGCGGATGTATCCCCATCTGAGGTAAATTCGCTTTGTTATTTTTAAAGTCGGATTTACCTATTGGGTACCCCCATCTGAGGTGGGGTAAATCCGATTGTCTTTTTTTAGGAAAATCGGATTTAGGTAAATCCGATTTTAAAAATAACAAAGCGGATGTATCCCCATCTGAGGTAAATCCGCTTTGTTATTTTTAAAGTCGGATTTACCTATTGGGTACCCCCATCTGAGGTAAATCCGACTTTAAAAATAACAAAGCGGATTTACCTTATATGGAGGTAAATCCAAGCGATTTTTAGATGGGCTGGGGTATTTTCGGGTATATGGGATATGATGGGGGTAGATTCGCATGTGATGGTGGTACATAAAAAAAGACCCTAAAATATTACATACTAATAAATTTTGAGGCCCTTTTTTCTAAAAAGAATTTGAGACCCTGCTTTAGTTGTTTGGGCCTTGGATCGGCCCTAAACGCTACCATCAGCATTCAACACTACCTCATCTGCACTAGGTCTCATCCAAGCATTAAGCTTCTCAAGTGACTATGGAGTGGAAAAAACAAAAATGAGGTTTATAAGCATTGACCACAACAACGTGTAAACTATCTATCTTAGATACATTTGTGAGGTAAAAGGTATGAGTATCCTAAAAGCAAAACTTAGGAAAATGTTGTGAGAATGAGGGTATTTTTCGGAAAATAATTTAAAAAACCGAAAGGCGGCGCGAATAGTAAAACAAAAGGTGCGAAAAACCCTACCAGATGACCCATAGATGACCCGGCCCATTTATTTAGCCCAAGAAAAAACCTACTAATGTGTATAATAACTTCATAACCCTAACGTTTCTTAAAACCTAATCGCCAGAGAAGAGAGCAGCAGAGTTGATCTCAATTTTCACGGTATCTCTATCTATCCATATTCTAGTTCTTCTCGAATTTCTTCGGTTCCTTCTGATTCTACTCGTATATTTCCGTTCATTCTGATTATTTCAGTGTGTATAAGCAGGAGACCATAGTTGCTCGTGCTTCCAGGGAACA

Pfam domain

Pfam accession	Pfam name	Protein start	Protein end	E-value
PF00338.25	Ribosomal_S10	24	118	4.20E-26

Gene family

Gene family	Subfamily
--	--

Gene Ontology

GO term	Description	Category
GO:0015935	small ribosomal subunit	Cellular Component
GO:0003735	structural constituent of ribosome	Molecular Function
GO:0006412	translation	Biological Process
GO:0003723	RNA binding	Molecular Function
GO:0022626	cytosolic ribosome	Cellular Component

InterPro

InterPro term	Description
IPR005729	Ribosomal protein S10, eukaryotic/archaeal
IPR018268	Ribosomal protein S10, conserved site
IPR036838	Ribosomal protein S10 domain superfamily
IPR027486	Ribosomal protein S10 domain
IPR001848	Ribosomal protein S10

trEMBL

trEMBL term	Description
A0A7J6GUM2	_

SwissProt

SwissProt term	Description
RS202_ARATH	Small ribosomal subunit protein uS10y

KEGG

KO	Description	Enzyme
K02969	small subunit ribosomal protein S20e

Orthologous genes

Species	Gene ID	Annotation
Arabidopsis thaliana	AT3G47370	Ribosomal protein S10p/S20e family protein
Medicago sativa L.	MsG0780040559.01.T01	_
Oryza sativa L.	LOC_Os03g14530.1	S10/S20 domain containing ribosomal protein, putative, expressed
Cucumis sativus L.	Csa018250	_
Glycyrrhiza uralensis Fisch.	Glyur000180s00014067.1	_
Codonopsis lanceolata	Cl_chr03_48570T	_
Arachis hypogaea L.	AH16G03880.1	40S ribosomal protein S20-2 like

Expression pattern